Wall clock time and date at job start Tue Mar 31 2020 12:02:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46492 * 1 3 3 S 1.65603 * 120.00018 * 2 1 4 4 O 1.42101 * 106.40104 * 311.45271 * 3 2 1 5 5 O 1.42110 * 106.40101 * 178.53886 * 3 2 1 6 6 C 1.76198 * 107.22172 * 64.99873 * 3 2 1 7 7 C 1.38425 * 119.92014 * 270.02385 * 6 3 2 8 8 C 1.38375 * 120.30149 * 179.97438 * 7 6 3 9 9 C 1.37945 * 120.15440 * 359.76496 * 8 7 6 10 10 C 1.39647 * 119.84395 * 0.48419 * 9 8 7 11 11 C 1.47816 * 120.15083 * 179.76310 * 10 9 8 12 12 N 1.32580 * 119.99104 * 136.24521 * 11 10 9 13 13 C 1.31746 * 121.72463 * 180.02562 * 12 11 10 14 14 C 1.38868 * 121.50266 * 359.97438 * 13 12 11 15 15 C 1.36892 * 119.79895 * 0.27801 * 14 13 12 16 16 C 1.41122 * 118.39205 * 359.49139 * 15 14 13 17 17 C 1.40888 * 120.71668 * 180.23912 * 16 15 14 18 18 H 1.08001 * 119.99830 * 150.79321 * 17 16 15 19 19 C 1.40081 * 119.99856 * 330.78965 * 17 16 15 20 20 N 1.30768 * 119.99682 * 162.86093 * 19 17 16 21 21 Si 1.86795 * 120.00036 * 342.86615 * 19 17 16 22 22 H 1.48493 * 109.47365 * 90.56152 * 21 19 17 23 23 H 1.48504 * 109.46961 * 210.56232 * 21 19 17 24 24 H 1.48500 * 109.47062 * 330.56024 * 21 19 17 25 25 C 1.37891 * 119.92509 * 89.99635 * 6 3 2 26 26 H 1.09004 * 109.47254 * 300.00882 * 1 2 3 27 27 H 1.09001 * 109.47327 * 59.99873 * 1 2 3 28 28 H 1.08998 * 109.47753 * 180.02562 * 1 2 3 29 29 H 0.96997 * 120.00088 * 179.97438 * 2 1 3 30 30 H 1.07995 * 119.85049 * 359.97438 * 7 6 3 31 31 H 1.08003 * 119.92137 * 180.02562 * 8 7 6 32 32 H 1.08002 * 120.07636 * 180.25092 * 9 8 7 33 33 H 1.07994 * 119.24841 * 180.02562 * 13 12 11 34 34 H 1.08005 * 120.09932 * 180.02562 * 14 13 12 35 35 H 1.07998 * 120.80191 * 179.69768 * 15 14 13 36 36 H 0.96998 * 120.00330 * 180.02562 * 20 19 17 37 37 H 1.08000 * 120.07863 * 359.97438 * 25 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 16 2.2929 1.4342 0.0000 4 8 1.7120 2.2329 -1.0217 5 8 3.6738 1.1002 0.0348 6 6 1.9378 2.2416 1.5253 7 6 0.8567 3.1013 1.6161 8 6 0.5702 3.7391 2.8101 9 6 1.3586 3.5181 3.9203 10 6 2.4539 2.6562 3.8344 11 6 3.3063 2.4185 5.0184 12 7 3.6999 1.1878 5.3154 13 6 4.4592 0.9370 6.3624 14 6 4.8866 1.9517 7.2086 15 6 4.5123 3.2453 6.9628 16 6 3.7031 3.5073 5.8367 17 6 3.2935 4.8211 5.5349 18 1 3.1069 5.1065 4.5101 19 6 3.1282 5.7571 6.5639 20 7 3.0806 7.0338 6.2850 21 14 2.9759 5.1814 8.3344 22 1 4.3240 5.1259 8.9546 23 1 2.1213 6.1308 9.0918 24 1 2.3612 3.8300 8.3644 25 6 2.7371 2.0152 2.6259 26 1 -0.3634 0.5140 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 1.9499 -0.8400 0.0004 30 1 0.2339 3.2750 0.7510 31 1 -0.2751 4.4083 2.8742 32 1 1.1314 4.0135 4.8528 33 1 4.7568 -0.0809 6.5667 34 1 5.5091 1.7204 8.0603 35 1 4.8314 4.0464 7.6130 36 1 2.9665 7.6820 6.9975 37 1 3.5797 1.3436 2.5539 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240776806.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:02:21 Heat of formation + Delta-G solvation = -22.702811 kcal Electronic energy + Delta-G solvation = -23938.151019 eV Core-core repulsion = 20385.907602 eV Total energy + Delta-G solvation = -3552.243417 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.082 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -39.34149 -37.96107 -37.07408 -35.69755 -35.00832 -34.26216 -32.18910 -31.60603 -30.71746 -28.97842 -26.06217 -25.79919 -23.31286 -22.80994 -21.59140 -20.76430 -19.35499 -17.79521 -17.73298 -17.41340 -16.26400 -16.04246 -15.57632 -15.28939 -15.05710 -14.65096 -14.15896 -13.92936 -13.82134 -13.57810 -13.16791 -12.89756 -12.74694 -12.46293 -12.29991 -12.16866 -11.94502 -11.85534 -11.85008 -11.61677 -11.57072 -11.03365 -11.00823 -10.50095 -10.42546 -10.08816 -9.69115 -9.63428 -9.01975 -8.78781 -8.50272 -8.30785 -7.67724 -7.27392 -4.79093 0.56523 1.24614 1.60091 2.30340 2.51981 2.87377 2.98295 3.07308 3.15273 3.68868 3.80655 4.10981 4.30726 4.53041 4.94148 5.11222 5.15805 5.30837 5.34338 5.38813 5.59887 5.66605 5.77360 5.83275 5.87316 5.94997 6.06176 6.21855 6.32580 6.37444 6.49438 6.66142 6.74857 6.87637 6.93208 7.01428 7.25346 7.29436 7.44308 7.59988 7.98455 8.21801 8.39676 9.20550 9.71484 Molecular weight = 318.08amu Principal moments of inertia in cm(-1) A = 0.019076 B = 0.004273 C = 0.003813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1467.486581 B = 6551.545985 C = 7341.161933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -1.123 6.123 3 S 2.699 3.301 4 O -0.964 6.964 5 O -0.961 6.961 6 C -0.682 4.682 7 C -0.041 4.041 8 C -0.146 4.146 9 C -0.033 4.033 10 C 0.000 4.000 11 C 0.024 3.976 12 N -0.441 5.441 13 C -0.038 4.038 14 C -0.117 4.117 15 C -0.209 4.209 16 C 0.063 3.937 17 C -0.425 4.425 18 H 0.103 0.897 19 C 0.083 3.917 20 N -0.784 5.784 21 Si 0.912 3.088 22 H -0.265 1.265 23 H -0.285 1.285 24 H -0.246 1.246 25 C -0.008 4.008 26 H 0.062 0.938 27 H 0.066 0.934 28 H 0.079 0.921 29 H 0.417 0.583 30 H 0.131 0.869 31 H 0.127 0.873 32 H 0.142 0.858 33 H 0.129 0.871 34 H 0.106 0.894 35 H 0.114 0.886 36 H 0.291 0.709 37 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.577 -8.265 -4.943 11.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.882 5.882 3 S 2.789 3.211 4 O -0.954 6.954 5 O -0.952 6.952 6 C -0.771 4.771 7 C -0.061 4.061 8 C -0.165 4.165 9 C -0.052 4.052 10 C -0.001 4.001 11 C -0.116 4.116 12 N -0.148 5.148 13 C -0.197 4.197 14 C -0.137 4.137 15 C -0.234 4.234 16 C 0.058 3.942 17 C -0.453 4.453 18 H 0.121 0.879 19 C -0.140 4.140 20 N -0.405 5.405 21 Si 0.738 3.262 22 H -0.191 1.191 23 H -0.212 1.212 24 H -0.169 1.169 25 C -0.029 4.029 26 H 0.080 0.920 27 H 0.085 0.915 28 H 0.098 0.902 29 H 0.251 0.749 30 H 0.149 0.851 31 H 0.145 0.855 32 H 0.160 0.840 33 H 0.146 0.854 34 H 0.124 0.876 35 H 0.131 0.869 36 H 0.102 0.898 37 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -6.456 -8.186 -6.117 12.088 hybrid contribution 0.276 0.484 2.283 2.350 sum -6.180 -7.702 -3.834 10.593 Atomic orbital electron populations 1.21464 0.78690 1.03947 1.02070 1.55338 1.16066 1.24495 1.92259 1.01648 0.72767 0.72587 0.74074 1.93553 1.78879 1.68384 1.54619 1.93590 1.30833 1.83366 1.87384 1.30429 1.08415 1.17382 1.20826 1.20777 0.94060 0.93329 0.97960 1.21132 1.00963 1.01298 0.93060 1.21826 0.91264 0.93034 0.99126 1.18475 0.93949 0.95811 0.91906 1.19353 1.04579 0.88448 0.99198 1.67040 1.08708 1.22691 1.16330 1.21703 1.04639 0.97935 0.95434 1.21390 0.99157 0.94185 0.98987 1.21220 1.03834 0.96451 1.01893 1.18403 0.90720 0.93773 0.91295 1.19564 1.36960 0.91759 0.97000 0.87910 1.26268 0.91383 0.94106 1.02229 1.69643 1.31643 1.02180 1.37069 0.86329 0.79148 0.80312 0.80396 1.19109 1.21246 1.16941 1.20965 0.96002 0.95579 0.90310 0.91957 0.91523 0.90173 0.74907 0.85149 0.85508 0.84034 0.85391 0.87599 0.86877 0.89773 0.84656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.71 11.14 59.84 0.67 1.37 16 2 N -1.12 -11.77 6.19 -16.64 -0.10 -11.88 16 3 S 2.70 39.63 5.74 -107.50 -0.62 39.02 16 4 O -0.96 -15.83 17.00 -57.17 -0.97 -16.80 16 5 O -0.96 -17.02 17.27 -57.17 -0.99 -18.00 16 6 C -0.68 -11.29 5.94 -39.64 -0.24 -11.52 16 7 C -0.04 -0.64 9.52 -39.46 -0.38 -1.01 16 8 C -0.15 -2.35 10.03 -39.64 -0.40 -2.75 16 9 C -0.03 -0.64 7.87 -39.16 -0.31 -0.95 16 10 C 0.00 0.01 5.26 -104.91 -0.55 -0.54 16 11 C 0.02 0.57 6.43 -82.24 -0.53 0.04 16 12 N -0.44 -9.97 10.15 -9.17 -0.09 -10.07 16 13 C -0.04 -0.79 11.16 -17.36 -0.19 -0.98 16 14 C -0.12 -2.39 10.03 -39.84 -0.40 -2.79 16 15 C -0.21 -4.71 7.32 -38.98 -0.29 -5.00 16 16 C 0.06 1.52 5.12 -106.41 -0.55 0.97 16 17 C -0.43 -10.39 7.21 -37.89 -0.27 -10.67 16 18 H 0.10 2.66 6.72 -52.49 -0.35 2.30 16 19 C 0.08 1.94 5.44 -17.31 -0.09 1.85 16 20 N -0.78 -18.83 13.92 55.55 0.77 -18.05 16 21 Si 0.91 18.81 24.53 -169.99 -4.17 14.64 16 22 H -0.27 -5.32 6.47 56.52 0.37 -4.95 16 23 H -0.29 -5.65 7.11 56.52 0.40 -5.25 16 24 H -0.25 -5.26 6.99 56.52 0.40 -4.86 16 25 C -0.01 -0.16 9.13 -39.16 -0.36 -0.52 16 26 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.07 0.53 8.10 -51.93 -0.42 0.11 16 28 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.42 3.53 8.96 -34.47 -0.31 3.22 16 30 H 0.13 1.66 7.61 -52.49 -0.40 1.26 16 31 H 0.13 1.67 8.06 -52.48 -0.42 1.25 16 32 H 0.14 2.79 6.75 -52.49 -0.35 2.43 16 33 H 0.13 2.25 8.06 -52.49 -0.42 1.82 16 34 H 0.11 1.80 8.06 -52.48 -0.42 1.38 16 35 H 0.11 2.49 4.52 -52.49 -0.24 2.25 16 36 H 0.29 6.31 8.29 -40.82 -0.34 5.97 16 37 H 0.14 2.63 7.61 -52.49 -0.40 2.23 16 LS Contribution 325.98 15.07 4.91 4.91 Total: -1.00 -30.56 325.98 -8.90 -39.46 By element: Atomic # 1 Polarization: 13.05 SS G_CDS: -3.76 Total: 9.28 kcal Atomic # 6 Polarization: -28.63 SS G_CDS: -3.88 Total: -32.50 kcal Atomic # 7 Polarization: -40.57 SS G_CDS: 0.58 Total: -40.00 kcal Atomic # 8 Polarization: -32.85 SS G_CDS: -1.96 Total: -34.81 kcal Atomic # 14 Polarization: 18.81 SS G_CDS: -4.17 Total: 14.64 kcal Atomic # 16 Polarization: 39.63 SS G_CDS: -0.62 Total: 39.02 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -30.56 -8.90 -39.46 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240776806.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.755 kcal (2) G-P(sol) polarization free energy of solvation -30.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.458 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds