Wall clock time and date at job start Tue Mar 31 2020 12:02:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46492 * 1 3 3 S 1.65603 * 120.00018 * 2 1 4 4 O 1.42101 * 106.40104 * 311.45271 * 3 2 1 5 5 O 1.42110 * 106.40101 * 178.53886 * 3 2 1 6 6 C 1.76198 * 107.22172 * 64.99873 * 3 2 1 7 7 C 1.38425 * 119.92014 * 270.02385 * 6 3 2 8 8 C 1.38375 * 120.30149 * 179.97438 * 7 6 3 9 9 C 1.37945 * 120.15440 * 359.76496 * 8 7 6 10 10 C 1.39647 * 119.84395 * 0.48419 * 9 8 7 11 11 C 1.47816 * 120.15083 * 179.76310 * 10 9 8 12 12 N 1.32580 * 119.99104 * 136.24521 * 11 10 9 13 13 C 1.31746 * 121.72463 * 180.02562 * 12 11 10 14 14 C 1.38868 * 121.50266 * 359.97438 * 13 12 11 15 15 C 1.36892 * 119.79895 * 0.27801 * 14 13 12 16 16 C 1.41122 * 118.39205 * 359.49139 * 15 14 13 17 17 C 1.40888 * 120.71668 * 180.23912 * 16 15 14 18 18 H 1.08001 * 119.99830 * 150.79321 * 17 16 15 19 19 C 1.40081 * 119.99856 * 330.78965 * 17 16 15 20 20 N 1.30768 * 119.99682 * 162.86093 * 19 17 16 21 21 Si 1.86795 * 120.00036 * 342.86615 * 19 17 16 22 22 H 1.48493 * 109.47365 * 90.56152 * 21 19 17 23 23 H 1.48504 * 109.46961 * 210.56232 * 21 19 17 24 24 H 1.48500 * 109.47062 * 330.56024 * 21 19 17 25 25 C 1.37891 * 119.92509 * 89.99635 * 6 3 2 26 26 H 1.09004 * 109.47254 * 300.00882 * 1 2 3 27 27 H 1.09001 * 109.47327 * 59.99873 * 1 2 3 28 28 H 1.08998 * 109.47753 * 180.02562 * 1 2 3 29 29 H 0.96997 * 120.00088 * 179.97438 * 2 1 3 30 30 H 1.07995 * 119.85049 * 359.97438 * 7 6 3 31 31 H 1.08003 * 119.92137 * 180.02562 * 8 7 6 32 32 H 1.08002 * 120.07636 * 180.25092 * 9 8 7 33 33 H 1.07994 * 119.24841 * 180.02562 * 13 12 11 34 34 H 1.08005 * 120.09932 * 180.02562 * 14 13 12 35 35 H 1.07998 * 120.80191 * 179.69768 * 15 14 13 36 36 H 0.96998 * 120.00330 * 180.02562 * 20 19 17 37 37 H 1.08000 * 120.07863 * 359.97438 * 25 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 16 2.2929 1.4342 0.0000 4 8 1.7120 2.2329 -1.0217 5 8 3.6738 1.1002 0.0348 6 6 1.9378 2.2416 1.5253 7 6 0.8567 3.1013 1.6161 8 6 0.5702 3.7391 2.8101 9 6 1.3586 3.5181 3.9203 10 6 2.4539 2.6562 3.8344 11 6 3.3063 2.4185 5.0184 12 7 3.6999 1.1878 5.3154 13 6 4.4592 0.9370 6.3624 14 6 4.8866 1.9517 7.2086 15 6 4.5123 3.2453 6.9628 16 6 3.7031 3.5073 5.8367 17 6 3.2935 4.8211 5.5349 18 1 3.1069 5.1065 4.5101 19 6 3.1282 5.7571 6.5639 20 7 3.0806 7.0338 6.2850 21 14 2.9759 5.1814 8.3344 22 1 4.3240 5.1259 8.9546 23 1 2.1213 6.1308 9.0918 24 1 2.3612 3.8300 8.3644 25 6 2.7371 2.0152 2.6259 26 1 -0.3634 0.5140 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 1.9499 -0.8400 0.0004 30 1 0.2339 3.2750 0.7510 31 1 -0.2751 4.4083 2.8742 32 1 1.1314 4.0135 4.8528 33 1 4.7568 -0.0809 6.5667 34 1 5.5091 1.7204 8.0603 35 1 4.8314 4.0464 7.6130 36 1 2.9665 7.6820 6.9975 37 1 3.5797 1.3436 2.5539 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001240776806.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:02:20 Heat of formation + Delta-G solvation = -45.094067 kcal Electronic energy + Delta-G solvation = -23939.121976 eV Core-core repulsion = 20385.907602 eV Total energy + Delta-G solvation = -3553.214375 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.082 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.93388 -39.46795 -38.35648 -36.98368 -36.01280 -35.85898 -33.72384 -33.33473 -32.12576 -30.54342 -27.53241 -26.79743 -24.87886 -24.24753 -23.23056 -22.29535 -20.50253 -19.50990 -19.09035 -18.60704 -17.67190 -17.37475 -16.96060 -16.81007 -16.56980 -15.99582 -15.52845 -15.44626 -15.14764 -14.65881 -14.64372 -14.37932 -14.07852 -13.89720 -13.76240 -13.66304 -13.34974 -13.26649 -13.20792 -13.14101 -12.69094 -12.54822 -12.47847 -12.02898 -11.89912 -11.70870 -11.40911 -10.57637 -10.52405 -10.22314 -10.15809 -10.01093 -9.29062 -9.02679 -6.59761 -0.61758 -0.16667 0.11501 0.64514 0.85335 1.20652 1.33930 1.42189 2.01617 2.05753 2.49571 2.57034 2.80432 3.30602 3.44807 3.66060 3.93874 4.06637 4.21285 4.28077 4.30711 4.36300 4.48875 4.52938 4.64347 4.72402 4.84542 4.89502 4.95381 4.98135 5.03202 5.04546 5.23595 5.39653 5.44422 5.58965 5.73139 5.87742 5.93058 6.12515 6.16391 6.48430 6.59704 7.49567 8.01840 Molecular weight = 318.08amu Principal moments of inertia in cm(-1) A = 0.019076 B = 0.004273 C = 0.003813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1467.486581 B = 6551.545985 C = 7341.161933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -1.109 6.109 3 S 2.724 3.276 4 O -0.978 6.978 5 O -0.995 6.995 6 C -0.683 4.683 7 C -0.032 4.032 8 C -0.140 4.140 9 C -0.048 4.048 10 C -0.032 4.032 11 C 0.011 3.989 12 N -0.459 5.459 13 C -0.034 4.034 14 C -0.116 4.116 15 C -0.223 4.223 16 C 0.043 3.957 17 C -0.447 4.447 18 H 0.073 0.927 19 C 0.055 3.945 20 N -0.820 5.820 21 Si 0.960 3.040 22 H -0.252 1.252 23 H -0.271 1.271 24 H -0.260 1.260 25 C -0.022 4.022 26 H 0.064 0.936 27 H 0.073 0.927 28 H 0.111 0.889 29 H 0.429 0.571 30 H 0.166 0.834 31 H 0.160 0.840 32 H 0.126 0.874 33 H 0.165 0.835 34 H 0.147 0.853 35 H 0.118 0.882 36 H 0.300 0.700 37 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.518 -9.917 -4.915 13.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.872 5.872 3 S 2.812 3.188 4 O -0.967 6.967 5 O -0.985 6.985 6 C -0.769 4.769 7 C -0.051 4.051 8 C -0.159 4.159 9 C -0.067 4.067 10 C -0.033 4.033 11 C -0.128 4.128 12 N -0.167 5.167 13 C -0.193 4.193 14 C -0.136 4.136 15 C -0.249 4.249 16 C 0.038 3.962 17 C -0.475 4.475 18 H 0.091 0.909 19 C -0.163 4.163 20 N -0.444 5.444 21 Si 0.784 3.216 22 H -0.178 1.178 23 H -0.198 1.198 24 H -0.184 1.184 25 C -0.042 4.042 26 H 0.083 0.917 27 H 0.092 0.908 28 H 0.129 0.871 29 H 0.265 0.735 30 H 0.183 0.817 31 H 0.177 0.823 32 H 0.144 0.856 33 H 0.182 0.818 34 H 0.165 0.835 35 H 0.135 0.865 36 H 0.111 0.889 37 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -7.397 -9.825 -6.080 13.719 hybrid contribution 0.539 0.790 2.152 2.355 sum -6.858 -9.035 -3.928 12.004 Atomic orbital electron populations 1.21806 0.76803 1.06263 1.02566 1.54994 1.17190 1.23372 1.91622 1.00869 0.71979 0.72957 0.73000 1.93533 1.79008 1.69592 1.54603 1.93542 1.33428 1.83976 1.87529 1.30772 1.07948 1.17460 1.20741 1.21231 0.93549 0.91676 0.98671 1.21490 1.01083 1.01105 0.92205 1.21805 0.91858 0.93197 0.99842 1.18609 0.94959 0.97640 0.92138 1.19761 1.04636 0.88549 0.99847 1.67146 1.09698 1.22432 1.17409 1.22454 1.02797 0.99817 0.94251 1.21804 0.98813 0.93020 0.99962 1.21441 1.03905 0.97840 1.01682 1.18619 0.91330 0.93786 0.92418 1.19376 1.39390 0.92726 0.96042 0.90906 1.26795 0.90780 0.93926 1.04837 1.69656 1.33445 1.02939 1.38381 0.85601 0.79710 0.79273 0.77061 1.17768 1.19752 1.18425 1.20889 0.96581 0.95951 0.90794 0.91732 0.90819 0.87080 0.73478 0.81651 0.82272 0.85576 0.81831 0.83491 0.86477 0.88895 0.85663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.96 11.14 127.77 1.42 2.38 16 2 N -1.11 -20.75 6.19 -206.55 -1.28 -22.03 16 3 S 2.72 76.69 5.74 -56.49 -0.32 76.36 16 4 O -0.98 -30.22 17.00 -128.00 -2.18 -32.40 16 5 O -0.99 -35.01 17.27 -128.00 -2.21 -37.22 16 6 C -0.68 -22.18 5.94 22.23 0.13 -22.04 16 7 C -0.03 -0.93 9.52 22.35 0.21 -0.72 16 8 C -0.14 -4.42 10.03 22.23 0.22 -4.19 16 9 C -0.05 -1.90 7.87 22.54 0.18 -1.72 16 10 C -0.03 -1.39 5.26 -20.05 -0.11 -1.49 16 11 C 0.01 0.53 6.43 42.46 0.27 0.80 16 12 N -0.46 -20.78 10.15 -182.93 -1.86 -22.63 16 13 C -0.03 -1.35 11.16 84.86 0.95 -0.40 16 14 C -0.12 -4.51 10.03 22.10 0.22 -4.29 16 15 C -0.22 -10.00 7.32 22.66 0.17 -9.83 16 16 C 0.04 2.14 5.12 -21.02 -0.11 2.03 16 17 C -0.45 -22.97 7.21 23.37 0.17 -22.80 16 18 H 0.07 4.05 6.72 -2.91 -0.02 4.03 16 19 C 0.06 2.69 5.44 85.30 0.46 3.15 16 20 N -0.82 -40.71 13.92 21.85 0.30 -40.40 16 21 Si 0.96 38.79 24.53 68.60 1.68 40.48 16 22 H -0.25 -9.59 6.47 99.48 0.64 -8.95 16 23 H -0.27 -10.21 7.11 99.48 0.71 -9.51 16 24 H -0.26 -10.99 6.99 99.48 0.70 -10.29 16 25 C -0.02 -0.86 9.13 22.54 0.21 -0.66 16 26 H 0.06 0.86 8.14 -2.38 -0.02 0.85 16 27 H 0.07 0.93 8.10 -2.39 -0.02 0.91 16 28 H 0.11 0.85 8.14 -2.39 -0.02 0.83 16 29 H 0.43 6.29 8.96 -96.75 -0.87 5.42 16 30 H 0.17 3.65 7.61 -2.91 -0.02 3.63 16 31 H 0.16 3.88 8.06 -2.91 -0.02 3.86 16 32 H 0.13 5.30 6.75 -2.91 -0.02 5.28 16 33 H 0.16 5.19 8.06 -2.91 -0.02 5.17 16 34 H 0.15 4.42 8.06 -2.91 -0.02 4.40 16 35 H 0.12 5.06 4.52 -2.91 -0.01 5.05 16 36 H 0.30 13.28 8.29 -92.71 -0.77 12.51 16 37 H 0.13 5.06 7.61 -2.91 -0.02 5.04 16 Total: -1.00 -68.13 325.98 -1.27 -69.40 By element: Atomic # 1 Polarization: 28.04 SS G_CDS: 0.18 Total: 28.23 kcal Atomic # 6 Polarization: -64.19 SS G_CDS: 4.40 Total: -59.79 kcal Atomic # 7 Polarization: -82.23 SS G_CDS: -2.83 Total: -85.06 kcal Atomic # 8 Polarization: -65.23 SS G_CDS: -4.39 Total: -69.62 kcal Atomic # 14 Polarization: 38.79 SS G_CDS: 1.68 Total: 40.48 kcal Atomic # 16 Polarization: 76.69 SS G_CDS: -0.32 Total: 76.36 kcal Total: -68.13 -1.27 -69.40 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240776806.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.310 kcal (2) G-P(sol) polarization free energy of solvation -68.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.404 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds