Wall clock time and date at job start Tue Mar 31 2020 12:02:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 S 1.65600 * 120.00218 * 2 1 4 4 O 1.42101 * 106.40112 * 311.46579 * 3 2 1 5 5 O 1.42100 * 106.40067 * 178.54305 * 3 2 1 6 6 C 1.76206 * 107.21716 * 65.00279 * 3 2 1 7 7 C 1.38413 * 119.92657 * 270.00377 * 6 3 2 8 8 C 1.38376 * 120.29254 * 179.97438 * 7 6 3 9 9 C 1.37948 * 120.14816 * 359.97438 * 8 7 6 10 10 C 1.39600 * 119.85014 * 359.97438 * 9 8 7 11 11 C 1.47966 * 120.14523 * 180.02562 * 10 9 8 12 12 C 1.40259 * 120.34546 * 359.97438 * 11 10 9 13 13 C 1.36693 * 118.60370 * 180.02562 * 12 11 10 14 14 C 1.40867 * 119.25597 * 359.97438 * 13 12 11 15 15 C 1.40992 * 119.68147 * 180.02562 * 14 13 12 16 16 H 1.07997 * 120.00114 * 0.02562 * 15 14 13 17 17 C 1.40109 * 119.99945 * 179.97438 * 15 14 13 18 18 N 1.30713 * 119.99692 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99922 * 179.97438 * 17 15 14 20 20 H 1.48505 * 109.46757 * 60.00707 * 19 17 15 21 21 H 1.48503 * 109.46873 * 180.02562 * 19 17 15 22 22 H 1.48496 * 109.47356 * 300.00396 * 19 17 15 23 23 N 1.33780 * 120.63933 * 359.97438 * 14 13 12 24 24 C 1.31194 * 121.50200 * 359.74259 * 23 14 13 25 25 C 1.37912 * 119.92278 * 89.99759 * 6 3 2 26 26 H 1.08998 * 109.47437 * 59.99222 * 1 2 3 27 27 H 1.08996 * 109.47326 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47141 * 299.99686 * 1 2 3 29 29 H 0.96999 * 119.99851 * 180.02562 * 2 1 3 30 30 H 1.08003 * 119.85615 * 359.97438 * 7 6 3 31 31 H 1.08001 * 119.92043 * 179.97438 * 8 7 6 32 32 H 1.07993 * 120.07594 * 180.02562 * 9 8 7 33 33 H 1.07998 * 120.69674 * 359.97438 * 12 11 10 34 34 H 1.08005 * 120.36797 * 179.97438 * 13 12 11 35 35 H 0.97003 * 119.99528 * 179.97438 * 18 17 15 36 36 H 1.07999 * 119.65757 * 180.25923 * 24 23 14 37 37 H 1.07993 * 120.07829 * 0.28096 * 25 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 16 2.2930 1.4341 0.0000 4 8 1.7119 2.2329 -1.0215 5 8 3.6738 1.1002 0.0347 6 6 1.9379 2.2414 1.5254 7 6 0.8571 3.1014 1.6164 8 6 0.5710 3.7390 2.8107 9 6 1.3620 3.5205 3.9195 10 6 2.4529 2.6536 3.8349 11 6 3.3054 2.4141 5.0204 12 6 3.0251 3.0553 6.2359 13 6 3.8363 2.8086 7.3082 14 6 4.9218 1.9231 7.1609 15 6 5.7639 1.6617 8.2611 16 1 5.5749 2.1393 9.2112 17 6 6.8452 0.7817 8.1222 18 7 7.0736 0.2034 6.9725 19 14 7.9613 0.4360 9.5798 20 1 7.1627 -0.1489 10.6868 21 1 9.0222 -0.5210 9.1748 22 1 8.5864 1.7033 10.0361 23 7 5.1609 1.3269 5.9874 24 6 4.3971 1.5395 4.9422 25 6 2.7373 2.0149 2.6261 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.9499 -0.8400 -0.0004 30 1 0.2344 3.2756 0.7513 31 1 -0.2736 4.4091 2.8748 32 1 1.1374 4.0184 4.8511 33 1 2.1866 3.7304 6.3227 34 1 3.6469 3.2873 8.2577 35 1 7.8225 -0.4056 6.8762 36 1 4.6151 1.0391 4.0103 37 1 3.5829 1.3471 2.5527 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240778894.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:02:49 Heat of formation + Delta-G solvation = -17.752732 kcal Electronic energy + Delta-G solvation = -23253.247722 eV Core-core repulsion = 19701.218956 eV Total energy + Delta-G solvation = -3552.028765 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.082 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.21461 -37.86408 -37.15981 -35.78241 -35.07923 -34.06137 -32.08731 -31.26658 -30.48828 -28.94306 -26.13662 -25.75469 -23.44896 -22.76067 -21.38210 -20.65148 -19.39219 -17.79662 -17.74822 -17.45674 -16.32226 -16.08097 -15.58558 -15.10520 -14.80348 -14.54387 -14.25226 -13.95592 -13.69015 -13.36210 -13.03162 -12.90679 -12.83141 -12.49636 -12.21971 -12.04945 -11.99265 -11.87720 -11.68550 -11.36477 -11.34655 -11.18033 -10.91251 -10.78203 -10.39492 -10.15514 -9.82813 -9.69367 -9.17380 -8.94811 -8.40571 -7.78642 -7.37982 -6.67534 -4.74208 0.46662 1.07679 1.45323 2.60151 2.91171 2.94431 2.96132 2.99042 3.11950 3.73506 3.73812 4.04895 4.44413 4.58566 4.87529 5.05263 5.15977 5.27091 5.35386 5.51702 5.53705 5.58120 5.70871 5.71307 5.88785 5.89906 6.06311 6.27825 6.35287 6.47166 6.57669 6.59561 6.80012 6.81653 6.83993 7.13134 7.17950 7.41505 7.57115 7.78207 7.94502 8.35132 8.64193 9.85561 10.01759 Molecular weight = 318.08amu Principal moments of inertia in cm(-1) A = 0.021189 B = 0.003164 C = 0.002872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1321.103976 B = 8847.994009 C = 9746.494476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -1.122 6.122 3 S 2.697 3.303 4 O -0.964 6.964 5 O -0.959 6.959 6 C -0.658 4.658 7 C -0.073 4.073 8 C -0.126 4.126 9 C -0.099 4.099 10 C 0.020 3.980 11 C -0.287 4.287 12 C -0.034 4.034 13 C -0.270 4.270 14 C 0.249 3.751 15 C -0.400 4.400 16 H 0.089 0.911 17 C 0.061 3.939 18 N -0.694 5.694 19 Si 0.914 3.086 20 H -0.262 1.262 21 H -0.274 1.274 22 H -0.262 1.262 23 N -0.487 5.487 24 C 0.160 3.840 25 C -0.049 4.049 26 H 0.066 0.934 27 H 0.080 0.920 28 H 0.061 0.939 29 H 0.418 0.582 30 H 0.129 0.871 31 H 0.122 0.878 32 H 0.124 0.876 33 H 0.099 0.901 34 H 0.102 0.898 35 H 0.280 0.720 36 H 0.125 0.875 37 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.889 -0.671 -7.965 13.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.882 5.882 3 S 2.787 3.213 4 O -0.954 6.954 5 O -0.949 6.949 6 C -0.746 4.746 7 C -0.093 4.093 8 C -0.145 4.145 9 C -0.117 4.117 10 C 0.018 3.982 11 C -0.293 4.293 12 C -0.057 4.057 13 C -0.293 4.293 14 C 0.127 3.873 15 C -0.429 4.429 16 H 0.107 0.893 17 C -0.167 4.167 18 N -0.313 5.313 19 Si 0.737 3.263 20 H -0.186 1.186 21 H -0.199 1.199 22 H -0.186 1.186 23 N -0.198 5.198 24 C -0.010 4.010 25 C -0.069 4.069 26 H 0.085 0.915 27 H 0.099 0.901 28 H 0.080 0.920 29 H 0.252 0.748 30 H 0.147 0.853 31 H 0.140 0.860 32 H 0.142 0.858 33 H 0.117 0.883 34 H 0.120 0.880 35 H 0.092 0.908 36 H 0.142 0.858 37 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -9.569 -0.929 -8.717 12.977 hybrid contribution -0.471 0.231 1.477 1.567 sum -10.040 -0.697 -7.240 12.397 Atomic orbital electron populations 1.21468 0.78667 1.04032 1.02020 1.55329 1.16090 1.24519 1.92216 1.01732 0.72820 0.72643 0.74106 1.93555 1.78878 1.68423 1.54547 1.93606 1.30685 1.83288 1.87304 1.30481 1.07521 1.15936 1.20701 1.20636 0.95207 0.95384 0.98050 1.21054 0.99977 1.00348 0.93077 1.21480 0.94492 0.97353 0.98424 1.18969 0.93167 0.93243 0.92818 1.18969 1.04312 1.12519 0.93477 1.20621 0.96719 0.95984 0.92387 1.21432 1.01483 1.07761 0.98581 1.18687 0.89663 0.87718 0.91210 1.19831 1.06871 1.19493 0.96737 0.89275 1.26235 0.98253 0.95069 0.97192 1.70101 1.22272 1.15527 1.23387 0.86261 0.79448 0.79410 0.81132 1.18646 1.19855 1.18636 1.68823 1.27405 1.25103 0.98456 1.22823 0.89177 0.91877 0.97137 1.20934 0.97179 0.97856 0.90907 0.91519 0.90092 0.92003 0.74779 0.85326 0.85963 0.85772 0.88303 0.87998 0.90845 0.85791 0.84529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.65 11.14 59.84 0.67 1.32 16 2 N -1.12 -11.06 6.19 -16.64 -0.10 -11.17 16 3 S 2.70 36.96 5.74 -107.50 -0.62 36.34 16 4 O -0.96 -14.90 17.00 -57.17 -0.97 -15.87 16 5 O -0.96 -16.12 17.27 -57.17 -0.99 -17.11 16 6 C -0.66 -9.92 5.94 -39.64 -0.24 -10.16 16 7 C -0.07 -1.01 9.52 -39.47 -0.38 -1.38 16 8 C -0.13 -1.72 10.03 -39.64 -0.40 -2.12 16 9 C -0.10 -1.57 9.44 -39.18 -0.37 -1.94 16 10 C 0.02 0.37 5.88 -104.88 -0.62 -0.24 16 11 C -0.29 -6.19 5.92 -104.45 -0.62 -6.81 16 12 C -0.03 -0.72 9.46 -39.38 -0.37 -1.10 16 13 C -0.27 -6.23 9.76 -39.15 -0.38 -6.62 16 14 C 0.25 6.47 6.55 -84.98 -0.56 5.91 16 15 C -0.40 -10.01 9.12 -37.84 -0.35 -10.36 16 16 H 0.09 2.04 7.85 -52.49 -0.41 1.63 16 17 C 0.06 1.44 5.50 -17.33 -0.10 1.35 16 18 N -0.69 -17.44 11.44 55.56 0.64 -16.81 16 19 Si 0.91 17.27 29.56 -169.99 -5.02 12.24 16 20 H -0.26 -4.87 7.11 56.52 0.40 -4.46 16 21 H -0.27 -5.06 7.11 56.52 0.40 -4.66 16 22 H -0.26 -4.89 7.11 56.52 0.40 -4.49 16 23 N -0.49 -12.88 7.83 -10.84 -0.08 -12.97 16 24 C 0.16 3.78 10.60 -17.13 -0.18 3.59 16 25 C -0.05 -0.86 8.91 -39.18 -0.35 -1.20 16 26 H 0.07 0.49 8.10 -51.93 -0.42 0.07 16 27 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.42 3.34 8.96 -34.47 -0.31 3.04 16 30 H 0.13 1.48 7.61 -52.48 -0.40 1.08 16 31 H 0.12 1.29 8.06 -52.49 -0.42 0.86 16 32 H 0.12 1.79 6.25 -52.49 -0.33 1.46 16 33 H 0.10 1.77 6.30 -52.49 -0.33 1.43 16 34 H 0.10 2.14 8.06 -52.48 -0.42 1.71 16 35 H 0.28 6.34 8.29 -40.82 -0.34 6.00 16 36 H 0.12 2.67 6.21 -52.49 -0.33 2.34 16 37 H 0.14 2.36 5.77 -52.49 -0.30 2.06 16 LS Contribution 331.86 15.07 5.00 5.00 Total: -1.00 -31.92 331.86 -10.03 -41.95 By element: Atomic # 1 Polarization: 11.79 SS G_CDS: -3.65 Total: 8.14 kcal Atomic # 6 Polarization: -25.52 SS G_CDS: -4.23 Total: -29.75 kcal Atomic # 7 Polarization: -41.39 SS G_CDS: 0.45 Total: -40.94 kcal Atomic # 8 Polarization: -31.02 SS G_CDS: -1.96 Total: -32.98 kcal Atomic # 14 Polarization: 17.27 SS G_CDS: -5.02 Total: 12.24 kcal Atomic # 16 Polarization: 36.96 SS G_CDS: -0.62 Total: 36.34 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -31.92 -10.03 -41.95 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240778894.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.200 kcal (2) G-P(sol) polarization free energy of solvation -31.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.953 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds