Wall clock time and date at job start Tue Mar 31 2020 12:02:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 S 1.65600 * 120.00218 * 2 1 4 4 O 1.42101 * 106.40112 * 311.46579 * 3 2 1 5 5 O 1.42100 * 106.40067 * 178.54305 * 3 2 1 6 6 C 1.76206 * 107.21716 * 65.00279 * 3 2 1 7 7 C 1.38413 * 119.92657 * 270.00377 * 6 3 2 8 8 C 1.38376 * 120.29254 * 179.97438 * 7 6 3 9 9 C 1.37948 * 120.14816 * 359.97438 * 8 7 6 10 10 C 1.39600 * 119.85014 * 359.97438 * 9 8 7 11 11 C 1.47966 * 120.14523 * 180.02562 * 10 9 8 12 12 C 1.40259 * 120.34546 * 359.97438 * 11 10 9 13 13 C 1.36693 * 118.60370 * 180.02562 * 12 11 10 14 14 C 1.40867 * 119.25597 * 359.97438 * 13 12 11 15 15 C 1.40992 * 119.68147 * 180.02562 * 14 13 12 16 16 H 1.07997 * 120.00114 * 0.02562 * 15 14 13 17 17 C 1.40109 * 119.99945 * 179.97438 * 15 14 13 18 18 N 1.30713 * 119.99692 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99922 * 179.97438 * 17 15 14 20 20 H 1.48505 * 109.46757 * 60.00707 * 19 17 15 21 21 H 1.48503 * 109.46873 * 180.02562 * 19 17 15 22 22 H 1.48496 * 109.47356 * 300.00396 * 19 17 15 23 23 N 1.33780 * 120.63933 * 359.97438 * 14 13 12 24 24 C 1.31194 * 121.50200 * 359.74259 * 23 14 13 25 25 C 1.37912 * 119.92278 * 89.99759 * 6 3 2 26 26 H 1.08998 * 109.47437 * 59.99222 * 1 2 3 27 27 H 1.08996 * 109.47326 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47141 * 299.99686 * 1 2 3 29 29 H 0.96999 * 119.99851 * 180.02562 * 2 1 3 30 30 H 1.08003 * 119.85615 * 359.97438 * 7 6 3 31 31 H 1.08001 * 119.92043 * 179.97438 * 8 7 6 32 32 H 1.07993 * 120.07594 * 180.02562 * 9 8 7 33 33 H 1.07998 * 120.69674 * 359.97438 * 12 11 10 34 34 H 1.08005 * 120.36797 * 179.97438 * 13 12 11 35 35 H 0.97003 * 119.99528 * 179.97438 * 18 17 15 36 36 H 1.07999 * 119.65757 * 180.25923 * 24 23 14 37 37 H 1.07993 * 120.07829 * 0.28096 * 25 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 16 2.2930 1.4341 0.0000 4 8 1.7119 2.2329 -1.0215 5 8 3.6738 1.1002 0.0347 6 6 1.9379 2.2414 1.5254 7 6 0.8571 3.1014 1.6164 8 6 0.5710 3.7390 2.8107 9 6 1.3620 3.5205 3.9195 10 6 2.4529 2.6536 3.8349 11 6 3.3054 2.4141 5.0204 12 6 3.0251 3.0553 6.2359 13 6 3.8363 2.8086 7.3082 14 6 4.9218 1.9231 7.1609 15 6 5.7639 1.6617 8.2611 16 1 5.5749 2.1393 9.2112 17 6 6.8452 0.7817 8.1222 18 7 7.0736 0.2034 6.9725 19 14 7.9613 0.4360 9.5798 20 1 7.1627 -0.1489 10.6868 21 1 9.0222 -0.5210 9.1748 22 1 8.5864 1.7033 10.0361 23 7 5.1609 1.3269 5.9874 24 6 4.3971 1.5395 4.9422 25 6 2.7373 2.0149 2.6261 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.9499 -0.8400 -0.0004 30 1 0.2344 3.2756 0.7513 31 1 -0.2736 4.4091 2.8748 32 1 1.1374 4.0184 4.8511 33 1 2.1866 3.7304 6.3227 34 1 3.6469 3.2873 8.2577 35 1 7.8225 -0.4056 6.8762 36 1 4.6151 1.0391 4.0103 37 1 3.5829 1.3471 2.5527 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001240778894.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:02:48 Heat of formation + Delta-G solvation = -40.002814 kcal Electronic energy + Delta-G solvation = -23254.212558 eV Core-core repulsion = 19701.218956 eV Total energy + Delta-G solvation = -3552.993601 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.082 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.70409 -39.41576 -38.36578 -36.99083 -35.88418 -35.75041 -33.64091 -32.77017 -31.97615 -30.53262 -27.44519 -26.80757 -24.87489 -24.25995 -22.96077 -22.15766 -20.46602 -19.51788 -18.92897 -18.60473 -17.63236 -17.34507 -16.97710 -16.46240 -16.17294 -15.95111 -15.66925 -15.19780 -14.66352 -14.63974 -14.48497 -14.45665 -14.03601 -13.81728 -13.73245 -13.33531 -13.23659 -13.15279 -12.93206 -12.88006 -12.72746 -12.53517 -12.46796 -12.16681 -11.87223 -11.60919 -11.42368 -10.70015 -10.52627 -10.23345 -10.13227 -9.58341 -9.02388 -8.40734 -6.56352 -0.62957 -0.19061 0.10109 0.98238 1.19584 1.38922 1.52435 1.54396 2.06117 2.17386 2.52288 2.72818 2.96019 3.32226 3.84191 3.87943 3.93245 4.02432 4.15180 4.25167 4.29658 4.41834 4.45264 4.67279 4.70212 4.82103 4.90396 4.94275 4.99233 5.01548 5.08328 5.12185 5.31604 5.34011 5.45579 5.64496 5.88640 5.98227 6.02670 6.08593 6.17634 6.59937 6.83386 8.06836 8.31750 Molecular weight = 318.08amu Principal moments of inertia in cm(-1) A = 0.021189 B = 0.003164 C = 0.002872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1321.103976 B = 8847.994009 C = 9746.494476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -1.112 6.112 3 S 2.718 3.282 4 O -0.978 6.978 5 O -0.996 6.996 6 C -0.665 4.665 7 C -0.057 4.057 8 C -0.120 4.120 9 C -0.092 4.092 10 C -0.016 4.016 11 C -0.273 4.273 12 C -0.036 4.036 13 C -0.284 4.284 14 C 0.217 3.783 15 C -0.445 4.445 16 H 0.099 0.901 17 C 0.019 3.981 18 N -0.744 5.744 19 Si 0.993 3.007 20 H -0.255 1.255 21 H -0.269 1.269 22 H -0.256 1.256 23 N -0.522 5.522 24 C 0.128 3.872 25 C -0.061 4.061 26 H 0.073 0.927 27 H 0.108 0.892 28 H 0.066 0.934 29 H 0.428 0.572 30 H 0.160 0.840 31 H 0.166 0.834 32 H 0.142 0.858 33 H 0.138 0.862 34 H 0.118 0.882 35 H 0.284 0.716 36 H 0.129 0.871 37 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.830 0.359 -8.712 16.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.875 5.875 3 S 2.807 3.193 4 O -0.968 6.968 5 O -0.986 6.986 6 C -0.752 4.752 7 C -0.076 4.076 8 C -0.138 4.138 9 C -0.110 4.110 10 C -0.018 4.018 11 C -0.278 4.278 12 C -0.059 4.059 13 C -0.306 4.306 14 C 0.094 3.906 15 C -0.474 4.474 16 H 0.117 0.883 17 C -0.205 4.205 18 N -0.364 5.364 19 Si 0.812 3.188 20 H -0.179 1.179 21 H -0.193 1.193 22 H -0.181 1.181 23 N -0.235 5.235 24 C -0.039 4.039 25 C -0.081 4.081 26 H 0.092 0.908 27 H 0.127 0.873 28 H 0.085 0.915 29 H 0.264 0.736 30 H 0.178 0.822 31 H 0.184 0.816 32 H 0.160 0.840 33 H 0.156 0.844 34 H 0.136 0.864 35 H 0.094 0.906 36 H 0.146 0.854 37 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -12.542 0.109 -9.496 15.732 hybrid contribution 0.083 0.005 1.364 1.367 sum -12.459 0.113 -8.132 14.878 Atomic orbital electron populations 1.21798 0.76812 1.06177 1.02615 1.55040 1.17230 1.23491 1.91721 1.00990 0.71960 0.72979 0.73375 1.93533 1.78964 1.69503 1.54787 1.93557 1.33503 1.83962 1.87618 1.30670 1.07664 1.16597 1.20314 1.21187 0.94051 0.93098 0.99287 1.21529 1.00404 1.00083 0.91790 1.21765 0.93236 0.95865 1.00124 1.18948 0.94760 0.96001 0.92091 1.19283 1.03247 1.10359 0.94960 1.21010 0.97341 0.96099 0.91453 1.21652 1.01277 1.07664 1.00056 1.19163 0.91143 0.88846 0.91493 1.20171 1.08480 1.21596 0.97179 0.88341 1.27173 0.99228 0.94109 0.99975 1.70213 1.23450 1.16974 1.25781 0.85099 0.77182 0.79299 0.77205 1.17865 1.19284 1.18051 1.68743 1.28912 1.26447 0.99373 1.23077 0.90424 0.93380 0.97004 1.20903 0.97520 0.98058 0.91629 0.90819 0.87349 0.91511 0.73613 0.82208 0.81601 0.84021 0.84418 0.86391 0.90556 0.85373 0.85892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.87 11.14 127.77 1.42 2.29 16 2 N -1.11 -19.62 6.19 -206.55 -1.28 -20.90 16 3 S 2.72 70.65 5.74 -56.49 -0.32 70.32 16 4 O -0.98 -27.95 17.00 -128.00 -2.18 -30.13 16 5 O -1.00 -33.73 17.27 -128.00 -2.21 -35.94 16 6 C -0.66 -18.71 5.94 22.23 0.13 -18.58 16 7 C -0.06 -1.33 9.52 22.34 0.21 -1.11 16 8 C -0.12 -2.67 10.03 22.23 0.22 -2.44 16 9 C -0.09 -2.60 9.44 22.53 0.21 -2.38 16 10 C -0.02 -0.58 5.88 -20.03 -0.12 -0.70 16 11 C -0.27 -11.92 5.92 -19.76 -0.12 -12.03 16 12 C -0.04 -1.51 9.46 22.40 0.21 -1.30 16 13 C -0.28 -13.39 9.76 22.55 0.22 -13.17 16 14 C 0.22 11.81 6.55 40.17 0.26 12.08 16 15 C -0.44 -23.35 9.12 23.40 0.21 -23.13 16 16 H 0.10 4.70 7.85 -2.91 -0.02 4.68 16 17 C 0.02 0.92 5.50 85.31 0.47 1.39 16 18 N -0.74 -39.67 11.44 21.85 0.25 -39.42 16 19 Si 0.99 36.56 29.56 68.60 2.03 38.59 16 20 H -0.25 -8.95 7.11 99.48 0.71 -8.24 16 21 H -0.27 -9.48 7.11 99.48 0.71 -8.77 16 22 H -0.26 -9.09 7.11 99.48 0.71 -8.38 16 23 N -0.52 -29.40 7.83 -188.22 -1.47 -30.88 16 24 C 0.13 6.40 10.60 85.24 0.90 7.30 16 25 C -0.06 -2.12 8.91 22.53 0.20 -1.92 16 26 H 0.07 0.82 8.10 -2.39 -0.02 0.80 16 27 H 0.11 0.76 8.14 -2.39 -0.02 0.74 16 28 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 29 H 0.43 6.16 8.96 -96.75 -0.87 5.29 16 30 H 0.16 2.79 7.61 -2.91 -0.02 2.77 16 31 H 0.17 2.34 8.06 -2.91 -0.02 2.31 16 32 H 0.14 3.47 6.25 -2.91 -0.02 3.45 16 33 H 0.14 4.54 6.30 -2.91 -0.02 4.52 16 34 H 0.12 4.99 8.06 -2.91 -0.02 4.96 16 35 H 0.28 13.65 8.29 -92.71 -0.77 12.88 16 36 H 0.13 5.98 6.21 -2.91 -0.02 5.96 16 37 H 0.12 4.48 5.77 -2.91 -0.02 4.46 16 Total: -1.00 -73.41 331.86 -0.47 -73.88 By element: Atomic # 1 Polarization: 27.91 SS G_CDS: 0.26 Total: 28.18 kcal Atomic # 6 Polarization: -58.17 SS G_CDS: 4.45 Total: -53.71 kcal Atomic # 7 Polarization: -88.69 SS G_CDS: -2.50 Total: -91.19 kcal Atomic # 8 Polarization: -61.68 SS G_CDS: -4.39 Total: -66.07 kcal Atomic # 14 Polarization: 36.56 SS G_CDS: 2.03 Total: 38.59 kcal Atomic # 16 Polarization: 70.65 SS G_CDS: -0.32 Total: 70.32 kcal Total: -73.41 -0.47 -73.88 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240778894.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.882 kcal (2) G-P(sol) polarization free energy of solvation -73.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.885 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds