Wall clock time and date at job start Tue Mar 31 2020 12:03:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 S 1.65608 * 119.99843 * 2 1 4 4 O 1.42102 * 106.40116 * 311.45837 * 3 2 1 5 5 O 1.42102 * 106.40018 * 178.54253 * 3 2 1 6 6 C 1.76192 * 107.21968 * 65.00027 * 3 2 1 7 7 C 1.38428 * 119.92677 * 90.00014 * 6 3 2 8 8 C 1.38381 * 120.30409 * 180.02562 * 7 6 3 9 9 C 1.37931 * 120.15063 * 359.97438 * 8 7 6 10 10 C 1.39649 * 119.85337 * 359.97438 * 9 8 7 11 11 C 1.47845 * 120.15358 * 179.97438 * 10 9 8 12 12 C 1.39309 * 120.77878 * 130.00193 * 11 10 9 13 13 N 1.31674 * 120.66162 * 179.72545 * 12 11 10 14 14 C 1.32211 * 122.50411 * 0.27333 * 13 12 11 15 15 C 1.36492 * 121.50394 * 0.02562 * 14 13 12 16 16 C 1.41115 * 119.10557 * 359.97438 * 15 14 13 17 17 C 1.40944 * 121.10647 * 180.02562 * 16 15 14 18 18 H 1.07998 * 120.00050 * 154.56209 * 17 16 15 19 19 C 1.40183 * 119.99747 * 334.56359 * 17 16 15 20 20 N 1.30679 * 119.99784 * 344.37745 * 19 17 16 21 21 Si 1.86800 * 119.99467 * 164.37966 * 19 17 16 22 22 H 1.48495 * 109.47401 * 359.97438 * 21 19 17 23 23 H 1.48506 * 109.46859 * 120.00372 * 21 19 17 24 24 H 1.48506 * 109.46794 * 239.99541 * 21 19 17 25 25 C 1.37902 * 119.92311 * 270.23605 * 6 3 2 26 26 H 1.08998 * 109.47024 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.46834 * 300.00012 * 1 2 3 28 28 H 1.09001 * 109.47059 * 59.99829 * 1 2 3 29 29 H 0.96999 * 120.00510 * 179.97438 * 2 1 3 30 30 H 1.07995 * 119.84336 * 359.97438 * 7 6 3 31 31 H 1.08003 * 119.91804 * 179.97438 * 8 7 6 32 32 H 1.08002 * 120.07530 * 179.97438 * 9 8 7 33 33 H 1.07995 * 119.67100 * 0.02562 * 12 11 10 34 34 H 1.07996 * 119.24907 * 180.02562 * 14 13 12 35 35 H 1.08001 * 120.44581 * 179.97438 * 15 14 13 36 36 H 0.97000 * 119.99436 * 180.02562 * 20 19 17 37 37 H 1.07994 * 120.07899 * 0.02562 * 25 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 16 2.2930 1.4342 0.0000 4 8 1.7120 2.2330 -1.0216 5 8 3.6738 1.1003 0.0347 6 6 1.9378 2.2415 1.5253 7 6 2.7402 2.0144 2.6301 8 6 2.4681 2.6439 3.8320 9 6 1.3943 3.5033 3.9365 10 6 0.5812 3.7380 2.8256 11 6 -0.5718 4.6574 2.9303 12 6 -0.7601 5.6738 1.9963 13 7 -1.7908 6.4880 2.0887 14 6 -2.6862 6.3937 3.0568 15 6 -2.5911 5.4370 4.0256 16 6 -1.5114 4.5290 3.9900 17 6 -1.3724 3.5243 4.9686 18 1 -0.8327 2.6175 4.7386 19 6 -1.9345 3.7021 6.2404 20 7 -2.3144 4.8913 6.6264 21 14 -2.1403 2.2389 7.3833 22 1 -1.6363 1.0130 6.7138 23 1 -1.3710 2.4738 8.6316 24 1 -3.5781 2.0668 7.7130 25 6 0.8581 3.0946 1.6170 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 1.9500 -0.8400 0.0004 30 1 3.5820 1.3421 2.5539 31 1 3.0981 2.4618 4.6902 32 1 1.1828 3.9936 4.8752 33 1 -0.0564 5.7921 1.1857 34 1 -3.5118 7.0895 3.0817 35 1 -3.3321 5.3757 4.8090 36 1 -2.7030 5.0144 7.5066 37 1 0.2304 3.2677 0.7555 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240780909.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:03:16 Heat of formation + Delta-G solvation = -28.850034 kcal Electronic energy + Delta-G solvation = -23985.375056 eV Core-core repulsion = 20432.865076 eV Total energy + Delta-G solvation = -3552.509980 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.082 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -39.19511 -37.86321 -37.12645 -35.74731 -35.00750 -34.39151 -32.34289 -30.92769 -30.32318 -28.43679 -26.19928 -26.01942 -23.02551 -22.85992 -21.48093 -20.68878 -19.29944 -17.89541 -17.66914 -17.25268 -16.24379 -15.81017 -15.58547 -15.13720 -14.64471 -14.52160 -14.47539 -14.06290 -13.79497 -13.39472 -12.87564 -12.86491 -12.59568 -12.54212 -12.24935 -12.00817 -11.92789 -11.87131 -11.62464 -11.61592 -11.47335 -11.26311 -11.00227 -10.59503 -10.44335 -9.97503 -9.67007 -9.62619 -8.97810 -8.78777 -8.16132 -8.02487 -7.54391 -7.06703 -4.81527 0.52106 1.23581 1.61272 2.55475 2.66627 2.88123 2.92716 3.07328 3.13158 3.66128 3.75940 4.11488 4.43233 4.49468 4.98788 5.17440 5.23871 5.43227 5.44573 5.55938 5.64276 5.71756 5.72662 5.77539 5.82095 6.15169 6.16811 6.36346 6.43351 6.65328 6.69248 6.77633 6.85556 6.86205 7.10028 7.16762 7.26272 7.36230 7.64854 7.88684 8.22646 8.48274 8.51870 9.46608 9.80773 Molecular weight = 318.08amu Principal moments of inertia in cm(-1) A = 0.014234 B = 0.004687 C = 0.004060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1966.671992 B = 5973.083689 C = 6895.072267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -1.122 6.122 3 S 2.698 3.302 4 O -0.960 6.960 5 O -0.968 6.968 6 C -0.676 4.676 7 C -0.046 4.046 8 C -0.144 4.144 9 C -0.043 4.043 10 C 0.008 3.992 11 C -0.244 4.244 12 C 0.133 3.867 13 N -0.575 5.575 14 C 0.084 3.916 15 C -0.207 4.207 16 C 0.147 3.853 17 C -0.444 4.444 18 H 0.087 0.913 19 C 0.078 3.922 20 N -0.775 5.775 21 Si 0.909 3.091 22 H -0.257 1.257 23 H -0.271 1.271 24 H -0.268 1.268 25 C -0.035 4.035 26 H 0.080 0.920 27 H 0.065 0.935 28 H 0.068 0.932 29 H 0.416 0.584 30 H 0.129 0.871 31 H 0.124 0.876 32 H 0.137 0.863 33 H 0.124 0.876 34 H 0.120 0.880 35 H 0.127 0.873 36 H 0.286 0.714 37 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.206 -9.725 -3.401 11.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.881 5.881 3 S 2.789 3.211 4 O -0.950 6.950 5 O -0.958 6.958 6 C -0.765 4.765 7 C -0.065 4.065 8 C -0.163 4.163 9 C -0.062 4.062 10 C 0.006 3.994 11 C -0.249 4.249 12 C -0.025 4.025 13 N -0.289 5.289 14 C -0.063 4.063 15 C -0.229 4.229 16 C 0.139 3.861 17 C -0.474 4.474 18 H 0.105 0.895 19 C -0.144 4.144 20 N -0.399 5.399 21 Si 0.733 3.267 22 H -0.181 1.181 23 H -0.196 1.196 24 H -0.193 1.193 25 C -0.055 4.055 26 H 0.099 0.901 27 H 0.084 0.916 28 H 0.087 0.913 29 H 0.249 0.751 30 H 0.147 0.853 31 H 0.142 0.858 32 H 0.155 0.845 33 H 0.141 0.859 34 H 0.137 0.863 35 H 0.144 0.856 36 H 0.098 0.902 37 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 4.335 -8.428 -4.496 10.490 hybrid contribution -0.242 -1.497 2.201 2.673 sum 4.094 -9.925 -2.294 10.978 Atomic orbital electron populations 1.21514 0.78292 1.04025 1.02573 1.55314 1.16268 1.24262 1.92290 1.01658 0.72655 0.72617 0.74213 1.93578 1.78625 1.68233 1.54520 1.93559 1.31099 1.83603 1.87574 1.30423 1.08144 1.17073 1.20813 1.20709 0.96734 0.97428 0.91657 1.21162 0.98702 0.98966 0.97501 1.21816 0.91308 0.93923 0.99106 1.18795 0.93781 0.94678 0.92099 1.19466 0.98475 1.02699 1.04303 1.22158 0.94073 0.90763 0.95546 1.67350 1.05759 1.29677 1.26109 1.21770 0.96487 0.96728 0.91339 1.21916 1.00383 0.99536 1.01083 1.17726 0.88385 0.90638 0.89314 1.19641 1.29478 1.03109 0.95177 0.89540 1.26037 0.92421 0.96741 0.99158 1.69737 1.27796 1.22549 1.19811 0.86223 0.79277 0.81689 0.79558 1.18069 1.19588 1.19333 1.21063 0.93745 0.92512 0.98137 0.90122 0.91609 0.91330 0.75110 0.85317 0.85782 0.84548 0.85858 0.86271 0.85572 0.90230 0.84886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.79 11.14 59.85 0.67 1.46 16 2 N -1.12 -11.57 6.19 -16.64 -0.10 -11.67 16 3 S 2.70 37.74 5.73 -107.50 -0.62 37.12 16 4 O -0.96 -16.14 17.00 -57.17 -0.97 -17.11 16 5 O -0.97 -15.19 17.27 -57.17 -0.99 -16.18 16 6 C -0.68 -10.57 5.94 -39.63 -0.24 -10.81 16 7 C -0.05 -0.68 9.52 -39.46 -0.38 -1.06 16 8 C -0.14 -2.24 10.03 -39.64 -0.40 -2.64 16 9 C -0.04 -0.79 8.06 -39.17 -0.32 -1.11 16 10 C 0.01 0.16 5.00 -104.90 -0.52 -0.36 16 11 C -0.24 -5.48 5.54 -104.04 -0.58 -6.05 16 12 C 0.13 2.99 10.72 -17.22 -0.18 2.81 16 13 N -0.57 -13.50 10.32 -13.36 -0.14 -13.64 16 14 C 0.08 1.93 11.09 -18.02 -0.20 1.73 16 15 C -0.21 -4.97 8.72 -39.12 -0.34 -5.31 16 16 C 0.15 3.54 5.59 -106.26 -0.59 2.94 16 17 C -0.44 -10.28 7.29 -37.83 -0.28 -10.56 16 18 H 0.09 1.95 6.68 -52.49 -0.35 1.60 16 19 C 0.08 1.72 5.21 -17.31 -0.09 1.63 16 20 N -0.77 -17.80 10.95 55.56 0.61 -17.19 16 21 Si 0.91 16.63 29.59 -169.99 -5.03 11.60 16 22 H -0.26 -4.70 7.11 56.52 0.40 -4.30 16 23 H -0.27 -4.90 7.11 56.52 0.40 -4.50 16 24 H -0.27 -4.88 7.11 56.52 0.40 -4.47 16 25 C -0.03 -0.62 9.03 -39.16 -0.35 -0.97 16 26 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 27 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.07 0.66 8.10 -51.93 -0.42 0.24 16 29 H 0.42 3.20 8.96 -34.47 -0.31 2.89 16 30 H 0.13 1.62 7.61 -52.49 -0.40 1.22 16 31 H 0.12 1.57 8.06 -52.48 -0.42 1.15 16 32 H 0.14 2.62 7.34 -52.49 -0.39 2.23 16 33 H 0.12 2.49 8.05 -52.49 -0.42 2.07 16 34 H 0.12 2.41 8.06 -52.49 -0.42 1.99 16 35 H 0.13 3.06 6.27 -52.49 -0.33 2.73 16 36 H 0.29 5.95 8.29 -40.82 -0.34 5.61 16 37 H 0.13 2.27 7.61 -52.49 -0.40 1.87 16 LS Contribution 332.56 15.07 5.01 5.01 Total: -1.00 -29.76 332.56 -9.87 -39.63 By element: Atomic # 1 Polarization: 14.57 SS G_CDS: -3.84 Total: 10.73 kcal Atomic # 6 Polarization: -24.50 SS G_CDS: -3.80 Total: -28.29 kcal Atomic # 7 Polarization: -42.87 SS G_CDS: 0.37 Total: -42.50 kcal Atomic # 8 Polarization: -31.33 SS G_CDS: -1.96 Total: -33.29 kcal Atomic # 14 Polarization: 16.63 SS G_CDS: -5.03 Total: 11.60 kcal Atomic # 16 Polarization: 37.74 SS G_CDS: -0.62 Total: 37.12 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -29.76 -9.87 -39.63 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240780909.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.777 kcal (2) G-P(sol) polarization free energy of solvation -29.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.627 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds