Wall clock time and date at job start Tue Mar 31 2020 12:03:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 S 1.65608 * 119.99843 * 2 1 4 4 O 1.42102 * 106.40116 * 311.45837 * 3 2 1 5 5 O 1.42102 * 106.40018 * 178.54253 * 3 2 1 6 6 C 1.76192 * 107.21968 * 65.00027 * 3 2 1 7 7 C 1.38428 * 119.92677 * 90.00014 * 6 3 2 8 8 C 1.38381 * 120.30409 * 180.02562 * 7 6 3 9 9 C 1.37931 * 120.15063 * 359.97438 * 8 7 6 10 10 C 1.39649 * 119.85337 * 359.97438 * 9 8 7 11 11 C 1.47845 * 120.15358 * 179.97438 * 10 9 8 12 12 C 1.39309 * 120.77878 * 130.00193 * 11 10 9 13 13 N 1.31674 * 120.66162 * 179.72545 * 12 11 10 14 14 C 1.32211 * 122.50411 * 0.27333 * 13 12 11 15 15 C 1.36492 * 121.50394 * 0.02562 * 14 13 12 16 16 C 1.41115 * 119.10557 * 359.97438 * 15 14 13 17 17 C 1.40944 * 121.10647 * 180.02562 * 16 15 14 18 18 H 1.07998 * 120.00050 * 154.56209 * 17 16 15 19 19 C 1.40183 * 119.99747 * 334.56359 * 17 16 15 20 20 N 1.30679 * 119.99784 * 344.37745 * 19 17 16 21 21 Si 1.86800 * 119.99467 * 164.37966 * 19 17 16 22 22 H 1.48495 * 109.47401 * 359.97438 * 21 19 17 23 23 H 1.48506 * 109.46859 * 120.00372 * 21 19 17 24 24 H 1.48506 * 109.46794 * 239.99541 * 21 19 17 25 25 C 1.37902 * 119.92311 * 270.23605 * 6 3 2 26 26 H 1.08998 * 109.47024 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.46834 * 300.00012 * 1 2 3 28 28 H 1.09001 * 109.47059 * 59.99829 * 1 2 3 29 29 H 0.96999 * 120.00510 * 179.97438 * 2 1 3 30 30 H 1.07995 * 119.84336 * 359.97438 * 7 6 3 31 31 H 1.08003 * 119.91804 * 179.97438 * 8 7 6 32 32 H 1.08002 * 120.07530 * 179.97438 * 9 8 7 33 33 H 1.07995 * 119.67100 * 0.02562 * 12 11 10 34 34 H 1.07996 * 119.24907 * 180.02562 * 14 13 12 35 35 H 1.08001 * 120.44581 * 179.97438 * 15 14 13 36 36 H 0.97000 * 119.99436 * 180.02562 * 20 19 17 37 37 H 1.07994 * 120.07899 * 0.02562 * 25 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 16 2.2930 1.4342 0.0000 4 8 1.7120 2.2330 -1.0216 5 8 3.6738 1.1003 0.0347 6 6 1.9378 2.2415 1.5253 7 6 2.7402 2.0144 2.6301 8 6 2.4681 2.6439 3.8320 9 6 1.3943 3.5033 3.9365 10 6 0.5812 3.7380 2.8256 11 6 -0.5718 4.6574 2.9303 12 6 -0.7601 5.6738 1.9963 13 7 -1.7908 6.4880 2.0887 14 6 -2.6862 6.3937 3.0568 15 6 -2.5911 5.4370 4.0256 16 6 -1.5114 4.5290 3.9900 17 6 -1.3724 3.5243 4.9686 18 1 -0.8327 2.6175 4.7386 19 6 -1.9345 3.7021 6.2404 20 7 -2.3144 4.8913 6.6264 21 14 -2.1403 2.2389 7.3833 22 1 -1.6363 1.0130 6.7138 23 1 -1.3710 2.4738 8.6316 24 1 -3.5781 2.0668 7.7130 25 6 0.8581 3.0946 1.6170 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 1.9500 -0.8400 0.0004 30 1 3.5820 1.3421 2.5539 31 1 3.0981 2.4618 4.6902 32 1 1.1828 3.9936 4.8752 33 1 -0.0564 5.7921 1.1857 34 1 -3.5118 7.0895 3.0817 35 1 -3.3321 5.3757 4.8090 36 1 -2.7030 5.0144 7.5066 37 1 0.2304 3.2677 0.7555 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001240780909.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:03:15 Heat of formation + Delta-G solvation = -48.701797 kcal Electronic energy + Delta-G solvation = -23986.235893 eV Core-core repulsion = 20432.865076 eV Total energy + Delta-G solvation = -3553.370817 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.082 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.74534 -39.40346 -38.33869 -36.96841 -36.11480 -35.88249 -33.88943 -32.34180 -31.96312 -30.02107 -27.92946 -26.84539 -24.55955 -24.24401 -23.16165 -22.18572 -20.42271 -19.56586 -18.84656 -18.50935 -17.47322 -17.30465 -16.91914 -16.58053 -16.20640 -15.98920 -15.87827 -15.40306 -14.82303 -14.61842 -14.46885 -14.20053 -14.17558 -13.81959 -13.71457 -13.29688 -13.23798 -13.23081 -13.15931 -13.00499 -12.79748 -12.52447 -12.44725 -12.01404 -11.89799 -11.57366 -11.31959 -10.58578 -10.39719 -10.19029 -9.93901 -9.79051 -9.19292 -8.74454 -6.58372 -0.61022 -0.09033 0.20426 0.93387 0.96367 1.37626 1.50895 1.52567 2.06522 2.13279 2.55356 2.71091 2.84203 3.33821 3.65260 3.89491 3.98812 4.01694 4.21480 4.25379 4.37990 4.45308 4.50849 4.65991 4.76828 4.87741 4.92951 4.97664 5.00464 5.04190 5.09292 5.19238 5.35316 5.45050 5.48400 5.66175 5.87595 5.99459 6.12849 6.15076 6.46048 6.73046 6.75453 7.67103 8.16062 Molecular weight = 318.08amu Principal moments of inertia in cm(-1) A = 0.014234 B = 0.004687 C = 0.004060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1966.671992 B = 5973.083689 C = 6895.072267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -1.106 6.106 3 S 2.722 3.278 4 O -0.989 6.989 5 O -0.981 6.981 6 C -0.676 4.676 7 C -0.038 4.038 8 C -0.137 4.137 9 C -0.056 4.056 10 C -0.020 4.020 11 C -0.244 4.244 12 C 0.118 3.882 13 N -0.590 5.590 14 C 0.078 3.922 15 C -0.228 4.228 16 C 0.120 3.880 17 C -0.456 4.456 18 H 0.087 0.913 19 C 0.043 3.957 20 N -0.804 5.804 21 Si 0.978 3.022 22 H -0.254 1.254 23 H -0.264 1.264 24 H -0.265 1.265 25 C -0.039 4.039 26 H 0.114 0.886 27 H 0.055 0.945 28 H 0.065 0.935 29 H 0.431 0.569 30 H 0.161 0.839 31 H 0.158 0.842 32 H 0.120 0.880 33 H 0.140 0.860 34 H 0.141 0.859 35 H 0.117 0.883 36 H 0.295 0.705 37 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.449 -12.288 -3.082 13.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.869 5.869 3 S 2.811 3.189 4 O -0.978 6.978 5 O -0.971 6.971 6 C -0.764 4.764 7 C -0.057 4.057 8 C -0.156 4.156 9 C -0.075 4.075 10 C -0.022 4.022 11 C -0.249 4.249 12 C -0.039 4.039 13 N -0.305 5.305 14 C -0.070 4.070 15 C -0.250 4.250 16 C 0.112 3.888 17 C -0.486 4.486 18 H 0.105 0.895 19 C -0.177 4.177 20 N -0.428 5.428 21 Si 0.798 3.202 22 H -0.178 1.178 23 H -0.188 1.188 24 H -0.189 1.189 25 C -0.059 4.059 26 H 0.133 0.867 27 H 0.074 0.926 28 H 0.084 0.916 29 H 0.268 0.732 30 H 0.179 0.821 31 H 0.175 0.825 32 H 0.138 0.862 33 H 0.157 0.843 34 H 0.159 0.841 35 H 0.135 0.865 36 H 0.106 0.894 37 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 5.599 -10.982 -4.180 13.017 hybrid contribution -0.558 -0.756 2.053 2.258 sum 5.041 -11.739 -2.127 12.951 Atomic orbital electron populations 1.21714 0.77461 1.06131 1.01993 1.54950 1.16646 1.23668 1.91680 1.00890 0.72123 0.72752 0.73122 1.93546 1.79140 1.69751 1.55408 1.93536 1.32189 1.83878 1.87497 1.30724 1.07196 1.16397 1.22040 1.21156 0.96855 0.96812 0.90888 1.21485 0.97708 0.97408 0.98987 1.21749 0.92602 0.95112 0.98006 1.18767 0.93935 0.95835 0.93655 1.19738 0.98922 1.02851 1.03394 1.22484 0.94320 0.90850 0.96259 1.67384 1.06362 1.30267 1.26500 1.22077 0.97022 0.96908 0.90972 1.21920 1.00776 1.00722 1.01562 1.18101 0.88932 0.91294 0.90482 1.19775 1.30165 1.02936 0.95731 0.89475 1.26826 0.91530 0.99135 1.00162 1.69777 1.28020 1.24337 1.20696 0.85197 0.79284 0.78189 0.77512 1.17766 1.18825 1.18911 1.21021 0.94599 0.92978 0.97280 0.86723 0.92619 0.91629 0.73204 0.82145 0.82469 0.86230 0.84259 0.84149 0.86468 0.89400 0.85088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.23 11.14 127.77 1.42 2.65 16 2 N -1.11 -19.79 6.19 -206.55 -1.28 -21.06 16 3 S 2.72 70.66 5.73 -56.49 -0.32 70.34 16 4 O -0.99 -32.21 17.00 -128.00 -2.18 -34.38 16 5 O -0.98 -28.12 17.27 -128.00 -2.21 -30.34 16 6 C -0.68 -19.98 5.94 22.24 0.13 -19.85 16 7 C -0.04 -1.02 9.52 22.35 0.21 -0.81 16 8 C -0.14 -3.94 10.03 22.23 0.22 -3.72 16 9 C -0.06 -2.05 8.06 22.54 0.18 -1.87 16 10 C -0.02 -0.81 5.00 -20.04 -0.10 -0.91 16 11 C -0.24 -11.30 5.54 -19.49 -0.11 -11.40 16 12 C 0.12 5.45 10.72 84.97 0.91 6.37 16 13 N -0.59 -28.43 10.32 -196.20 -2.02 -30.46 16 14 C 0.08 3.69 11.09 84.23 0.93 4.62 16 15 C -0.23 -11.33 8.72 22.57 0.20 -11.14 16 16 C 0.12 5.96 5.59 -20.92 -0.12 5.84 16 17 C -0.46 -21.55 7.29 23.41 0.17 -21.38 16 18 H 0.09 3.99 6.68 -2.91 -0.02 3.97 16 19 C 0.04 1.89 5.21 85.34 0.44 2.33 16 20 N -0.80 -37.54 10.95 21.87 0.24 -37.30 16 21 Si 0.98 33.53 29.59 68.60 2.03 35.56 16 22 H -0.25 -8.52 7.11 99.48 0.71 -7.82 16 23 H -0.26 -8.69 7.11 99.48 0.71 -7.98 16 24 H -0.26 -8.85 7.11 99.48 0.71 -8.14 16 25 C -0.04 -1.38 9.03 22.54 0.20 -1.17 16 26 H 0.11 1.17 8.14 -2.39 -0.02 1.15 16 27 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 28 H 0.06 1.16 8.10 -2.39 -0.02 1.14 16 29 H 0.43 5.16 8.96 -96.74 -0.87 4.29 16 30 H 0.16 3.33 7.61 -2.91 -0.02 3.31 16 31 H 0.16 3.41 8.06 -2.91 -0.02 3.39 16 32 H 0.12 4.71 7.34 -2.91 -0.02 4.69 16 33 H 0.14 5.78 8.05 -2.91 -0.02 5.76 16 34 H 0.14 5.80 8.06 -2.91 -0.02 5.77 16 35 H 0.12 5.93 6.27 -2.91 -0.02 5.91 16 36 H 0.29 12.34 8.29 -92.71 -0.77 11.57 16 37 H 0.13 4.54 7.61 -2.91 -0.02 4.52 16 Total: -1.00 -64.73 332.56 -0.78 -65.52 By element: Atomic # 1 Polarization: 32.32 SS G_CDS: 0.25 Total: 32.57 kcal Atomic # 6 Polarization: -55.15 SS G_CDS: 4.71 Total: -50.45 kcal Atomic # 7 Polarization: -85.76 SS G_CDS: -3.06 Total: -88.82 kcal Atomic # 8 Polarization: -60.33 SS G_CDS: -4.39 Total: -64.72 kcal Atomic # 14 Polarization: 33.53 SS G_CDS: 2.03 Total: 35.56 kcal Atomic # 16 Polarization: 70.66 SS G_CDS: -0.32 Total: 70.34 kcal Total: -64.73 -0.78 -65.52 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240780909.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.816 kcal (2) G-P(sol) polarization free energy of solvation -64.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.517 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds