Wall clock time and date at job start Tue Mar 31 2020 12:06:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35931 * 117.00362 * 2 1 4 4 C 1.38409 * 119.98788 * 0.23835 * 3 2 1 5 5 C 1.39513 * 119.81204 * 180.27270 * 4 3 2 6 6 C 1.48010 * 120.10210 * 179.77246 * 5 4 3 7 7 C 1.40086 * 119.83858 * 359.71680 * 6 5 4 8 8 C 1.36109 * 120.39096 * 179.97438 * 7 6 5 9 9 C 1.40913 * 120.06135 * 0.05174 * 8 7 6 10 10 C 1.40829 * 120.15976 * 179.97438 * 9 8 7 11 11 H 1.08001 * 120.00118 * 205.54592 * 10 9 8 12 12 C 1.39993 * 120.00175 * 25.54633 * 10 9 8 13 13 N 1.30841 * 119.99738 * 17.26794 * 12 10 9 14 14 Si 1.86798 * 120.00226 * 197.26299 * 12 10 9 15 15 H 1.48499 * 109.47520 * 265.19178 * 14 12 10 16 16 H 1.48504 * 109.46938 * 25.19558 * 14 12 10 17 17 H 1.48499 * 109.47224 * 145.19108 * 14 12 10 18 18 C 1.41507 * 119.67993 * 0.22751 * 9 8 7 19 19 O 1.35671 * 120.19395 * 179.72983 * 18 9 8 20 20 C 1.42893 * 116.99971 * 179.97438 * 19 18 9 21 21 C 1.37972 * 119.60962 * 359.48821 * 18 9 8 22 22 C 1.39625 * 119.78847 * 359.48793 * 5 4 3 23 23 C 1.37938 * 119.97866 * 0.26221 * 22 5 4 24 24 C 1.38409 * 120.18596 * 359.97438 * 23 22 5 25 25 Cl 1.73607 * 119.89259 * 179.97438 * 24 23 22 26 26 H 1.08999 * 109.47585 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.46672 * 299.99590 * 1 2 3 28 28 H 1.09000 * 109.47178 * 59.99377 * 1 2 3 29 29 H 1.07996 * 120.09062 * 0.02562 * 4 3 2 30 30 H 1.07995 * 119.80375 * 0.02562 * 7 6 5 31 31 H 1.07997 * 119.96977 * 180.02562 * 8 7 6 32 32 H 0.97002 * 119.99707 * 180.02562 * 13 12 10 33 33 H 1.09001 * 109.47309 * 60.00034 * 20 19 18 34 34 H 1.09005 * 109.47375 * 180.02562 * 20 19 18 35 35 H 1.09002 * 109.47360 * 299.99966 * 20 19 18 36 36 H 1.07996 * 120.03403 * 180.23174 * 21 18 9 37 37 H 1.08009 * 120.00645 * 180.23088 * 22 5 4 38 38 H 1.07998 * 119.90313 * 179.97438 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0461 1.2111 0.0000 4 6 1.2921 2.3718 0.0050 5 6 1.9294 3.6129 -0.0008 6 6 1.1294 4.8581 -0.0006 7 6 -0.2697 4.7877 -0.0006 8 6 -1.0164 5.9257 0.0001 9 6 -0.3840 7.1849 -0.0003 10 6 -1.1546 8.3637 -0.0001 11 1 -0.7439 9.2774 -0.4037 12 6 -2.4530 8.3512 0.5232 13 7 -2.8339 7.3732 1.3046 14 14 -3.6415 9.7306 0.1062 15 1 -3.5976 10.7617 1.1739 16 1 -3.2537 10.3431 -1.1899 17 1 -5.0182 9.1835 0.0027 18 6 1.0291 7.2593 -0.0062 19 8 1.6488 8.4662 -0.0122 20 6 3.0777 8.4617 -0.0174 21 6 1.7729 6.0973 -0.0009 22 6 3.3242 3.6765 -0.0007 23 6 4.0671 2.5143 -0.0005 24 6 3.4339 1.2835 0.0003 25 17 4.3765 -0.1744 0.0000 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8901 28 1 -0.3633 0.5139 -0.8899 29 1 0.2136 2.3168 0.0093 30 1 -0.7587 3.8248 -0.0003 31 1 -2.0946 5.8635 0.0005 32 1 -3.7337 7.3644 1.6669 33 1 3.4362 7.9440 -0.9072 34 1 3.4443 9.4882 -0.0214 35 1 3.4428 7.9494 0.8728 36 1 2.8518 6.1461 -0.0017 37 1 3.8212 4.6354 -0.0014 38 1 5.1459 2.5649 -0.0008 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241734157.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:06:04 Heat of formation + Delta-G solvation = -40.909166 kcal Electronic energy + Delta-G solvation = -23341.985548 eV Core-core repulsion = 19754.616186 eV Total energy + Delta-G solvation = -3587.369361 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.081 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -39.93419 -38.82592 -37.35008 -36.35857 -35.82825 -34.00547 -31.39051 -30.19295 -29.04911 -28.87285 -27.11589 -26.61918 -25.14670 -22.44931 -22.26910 -20.46619 -20.23628 -18.01219 -17.60980 -16.44345 -16.18039 -15.85315 -15.63569 -15.34121 -14.76832 -14.68331 -14.35079 -13.94076 -13.61401 -13.32565 -13.04804 -13.00190 -12.55066 -12.24728 -11.95353 -11.76828 -11.58952 -11.35366 -11.30774 -11.23737 -11.00663 -10.91137 -10.82721 -10.60450 -10.55543 -10.02675 -9.84816 -9.71901 -9.42537 -8.59988 -8.06703 -7.41207 -7.17837 -6.94082 -4.43970 1.25465 1.68385 2.51507 2.63177 2.88694 2.95076 2.98711 3.05775 3.37854 3.74918 4.02066 4.37445 4.52984 5.02501 5.10596 5.25531 5.39002 5.41502 5.43886 5.55445 5.60521 5.68207 5.74391 5.77992 5.88426 6.00053 6.05225 6.28399 6.38673 6.49244 6.66730 6.78843 6.85882 6.99020 7.12246 7.16461 7.44648 7.51772 7.61001 7.86763 7.95365 8.20426 8.42946 8.54684 8.85005 9.87745 Molecular weight = 318.08amu Principal moments of inertia in cm(-1) A = 0.018794 B = 0.003354 C = 0.002873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1489.463165 B = 8347.158082 C = 9744.759591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.312 6.312 3 C 0.147 3.853 4 C -0.225 4.225 5 C 0.068 3.932 6 C -0.187 4.187 7 C -0.085 4.085 8 C -0.159 4.159 9 C 0.112 3.888 10 C -0.420 4.420 11 H 0.089 0.911 12 C 0.070 3.930 13 N -0.774 5.774 14 Si 0.915 3.085 15 H -0.267 1.267 16 H -0.257 1.257 17 H -0.273 1.273 18 C 0.007 3.993 19 O -0.313 6.313 20 C 0.033 3.967 21 C -0.143 4.143 22 C -0.172 4.172 23 C -0.063 4.063 24 C -0.109 4.109 25 Cl -0.082 7.082 26 H 0.097 0.903 27 H 0.057 0.943 28 H 0.056 0.944 29 H 0.135 0.865 30 H 0.093 0.907 31 H 0.126 0.874 32 H 0.286 0.714 33 H 0.041 0.959 34 H 0.083 0.917 35 H 0.041 0.959 36 H 0.104 0.896 37 H 0.126 0.874 38 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.366 -6.712 -1.703 8.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.225 6.225 3 C 0.101 3.899 4 C -0.244 4.244 5 C 0.068 3.932 6 C -0.189 4.189 7 C -0.104 4.104 8 C -0.179 4.179 9 C 0.109 3.891 10 C -0.447 4.447 11 H 0.107 0.893 12 C -0.151 4.151 13 N -0.398 5.398 14 Si 0.738 3.262 15 H -0.192 1.192 16 H -0.181 1.181 17 H -0.198 1.198 18 C -0.037 4.037 19 O -0.227 6.227 20 C -0.063 4.063 21 C -0.162 4.162 22 C -0.190 4.190 23 C -0.082 4.082 24 C -0.136 4.136 25 Cl -0.054 7.054 26 H 0.115 0.885 27 H 0.076 0.924 28 H 0.075 0.925 29 H 0.153 0.847 30 H 0.111 0.889 31 H 0.143 0.857 32 H 0.097 0.903 33 H 0.059 0.941 34 H 0.101 0.899 35 H 0.060 0.940 36 H 0.121 0.879 37 H 0.144 0.856 38 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 5.213 -6.916 -1.548 8.798 hybrid contribution -0.446 0.365 0.009 0.576 sum 4.767 -6.551 -1.539 8.247 Atomic orbital electron populations 1.23057 0.78446 1.03570 1.01791 1.86091 1.21265 1.26481 1.88661 1.18533 0.90291 0.84729 0.96357 1.21210 1.00112 0.90863 1.12168 1.18815 0.92357 0.92369 0.89689 1.17702 0.92333 0.89839 1.18996 1.20441 0.92431 0.97260 1.00262 1.20737 0.99677 0.90470 1.06979 1.17195 0.87508 0.94110 0.90334 1.19670 0.96682 0.97060 1.31320 0.89264 1.26078 0.98967 0.97333 0.92688 1.69823 1.19645 1.30145 1.20175 0.86169 0.78866 0.80681 0.80447 1.19243 1.18064 1.19775 1.19044 0.92197 0.82800 1.09692 1.85963 1.18351 1.28030 1.90372 1.22761 0.81499 1.01965 1.00044 1.20680 0.97520 0.91881 1.06120 1.21021 0.93313 0.97508 1.07178 1.20659 0.99694 0.89833 0.97972 1.19909 0.88270 0.87742 1.17666 1.98304 1.72369 1.37152 1.97573 0.88462 0.92445 0.92499 0.84738 0.88936 0.85672 0.90268 0.94091 0.89867 0.94031 0.87851 0.85578 0.85258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 9.81 101.05 0.99 1.29 16 2 O -0.31 -4.72 9.94 -19.52 -0.19 -4.92 16 3 C 0.15 2.43 6.68 -39.25 -0.26 2.17 16 4 C -0.22 -3.88 8.41 -39.04 -0.33 -4.21 16 5 C 0.07 1.27 5.88 -104.90 -0.62 0.66 16 6 C -0.19 -3.96 5.89 -104.68 -0.62 -4.58 16 7 C -0.09 -1.86 9.34 -39.65 -0.37 -2.24 16 8 C -0.16 -3.82 8.61 -39.33 -0.34 -4.16 16 9 C 0.11 2.81 5.58 -106.66 -0.59 2.22 16 10 C -0.42 -10.49 8.69 -37.95 -0.33 -10.82 16 11 H 0.09 2.21 7.65 -52.49 -0.40 1.80 16 12 C 0.07 1.62 5.14 -17.32 -0.09 1.53 16 13 N -0.77 -18.40 10.98 55.55 0.61 -17.79 16 14 Si 0.91 17.33 29.59 -169.99 -5.03 12.29 16 15 H -0.27 -5.03 7.11 56.52 0.40 -4.63 16 16 H -0.26 -4.86 7.11 56.52 0.40 -4.46 16 17 H -0.27 -5.02 7.11 56.52 0.40 -4.62 16 18 C 0.01 0.16 6.71 -38.43 -0.26 -0.10 16 19 O -0.31 -6.82 9.78 -18.71 -0.18 -7.00 16 20 C 0.03 0.53 9.81 101.05 0.99 1.53 16 21 C -0.14 -3.04 8.40 -39.16 -0.33 -3.37 16 22 C -0.17 -2.86 9.42 -39.17 -0.37 -3.22 16 23 C -0.06 -0.95 9.81 -39.63 -0.39 -1.34 16 24 C -0.11 -1.75 6.34 -39.25 -0.25 -2.00 16 25 Cl -0.08 -1.20 28.49 -51.86 -1.48 -2.68 16 26 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 27 H 0.06 0.64 7.65 -51.93 -0.40 0.24 16 28 H 0.06 0.62 7.67 -51.93 -0.40 0.22 16 29 H 0.14 2.17 4.40 -52.49 -0.23 1.94 16 30 H 0.09 1.79 6.16 -52.49 -0.32 1.47 16 31 H 0.13 3.05 6.19 -52.49 -0.33 2.73 16 32 H 0.29 6.12 8.30 -40.82 -0.34 5.78 16 33 H 0.04 0.60 7.67 -51.93 -0.40 0.21 16 34 H 0.08 1.09 8.14 -51.93 -0.42 0.66 16 35 H 0.04 0.63 7.65 -51.93 -0.40 0.23 16 36 H 0.10 1.91 4.40 -52.49 -0.23 1.68 16 37 H 0.13 1.93 6.17 -52.48 -0.32 1.60 16 38 H 0.13 1.61 8.06 -52.49 -0.42 1.19 16 LS Contribution 332.88 15.07 5.02 5.02 Total: -1.00 -27.01 332.88 -8.25 -35.26 By element: Atomic # 1 Polarization: 10.28 SS G_CDS: -3.83 Total: 6.45 kcal Atomic # 6 Polarization: -23.49 SS G_CDS: -3.16 Total: -26.64 kcal Atomic # 7 Polarization: -18.40 SS G_CDS: 0.61 Total: -17.79 kcal Atomic # 8 Polarization: -11.54 SS G_CDS: -0.38 Total: -11.92 kcal Atomic # 14 Polarization: 17.33 SS G_CDS: -5.03 Total: 12.29 kcal Atomic # 17 Polarization: -1.20 SS G_CDS: -1.48 Total: -2.68 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -27.01 -8.25 -35.26 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241734157.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.654 kcal (2) G-P(sol) polarization free energy of solvation -27.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.255 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds