Wall clock time and date at job start Tue Mar 31 2020 12:06:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35931 * 117.00362 * 2 1 4 4 C 1.38409 * 119.98788 * 0.23835 * 3 2 1 5 5 C 1.39513 * 119.81204 * 180.27270 * 4 3 2 6 6 C 1.48010 * 120.10210 * 179.77246 * 5 4 3 7 7 C 1.40086 * 119.83858 * 359.71680 * 6 5 4 8 8 C 1.36109 * 120.39096 * 179.97438 * 7 6 5 9 9 C 1.40913 * 120.06135 * 0.05174 * 8 7 6 10 10 C 1.40829 * 120.15976 * 179.97438 * 9 8 7 11 11 H 1.08001 * 120.00118 * 205.54592 * 10 9 8 12 12 C 1.39993 * 120.00175 * 25.54633 * 10 9 8 13 13 N 1.30841 * 119.99738 * 17.26794 * 12 10 9 14 14 Si 1.86798 * 120.00226 * 197.26299 * 12 10 9 15 15 H 1.48499 * 109.47520 * 265.19178 * 14 12 10 16 16 H 1.48504 * 109.46938 * 25.19558 * 14 12 10 17 17 H 1.48499 * 109.47224 * 145.19108 * 14 12 10 18 18 C 1.41507 * 119.67993 * 0.22751 * 9 8 7 19 19 O 1.35671 * 120.19395 * 179.72983 * 18 9 8 20 20 C 1.42893 * 116.99971 * 179.97438 * 19 18 9 21 21 C 1.37972 * 119.60962 * 359.48821 * 18 9 8 22 22 C 1.39625 * 119.78847 * 359.48793 * 5 4 3 23 23 C 1.37938 * 119.97866 * 0.26221 * 22 5 4 24 24 C 1.38409 * 120.18596 * 359.97438 * 23 22 5 25 25 Cl 1.73607 * 119.89259 * 179.97438 * 24 23 22 26 26 H 1.08999 * 109.47585 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.46672 * 299.99590 * 1 2 3 28 28 H 1.09000 * 109.47178 * 59.99377 * 1 2 3 29 29 H 1.07996 * 120.09062 * 0.02562 * 4 3 2 30 30 H 1.07995 * 119.80375 * 0.02562 * 7 6 5 31 31 H 1.07997 * 119.96977 * 180.02562 * 8 7 6 32 32 H 0.97002 * 119.99707 * 180.02562 * 13 12 10 33 33 H 1.09001 * 109.47309 * 60.00034 * 20 19 18 34 34 H 1.09005 * 109.47375 * 180.02562 * 20 19 18 35 35 H 1.09002 * 109.47360 * 299.99966 * 20 19 18 36 36 H 1.07996 * 120.03403 * 180.23174 * 21 18 9 37 37 H 1.08009 * 120.00645 * 180.23088 * 22 5 4 38 38 H 1.07998 * 119.90313 * 179.97438 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0461 1.2111 0.0000 4 6 1.2921 2.3718 0.0050 5 6 1.9294 3.6129 -0.0008 6 6 1.1294 4.8581 -0.0006 7 6 -0.2697 4.7877 -0.0006 8 6 -1.0164 5.9257 0.0001 9 6 -0.3840 7.1849 -0.0003 10 6 -1.1546 8.3637 -0.0001 11 1 -0.7439 9.2774 -0.4037 12 6 -2.4530 8.3512 0.5232 13 7 -2.8339 7.3732 1.3046 14 14 -3.6415 9.7306 0.1062 15 1 -3.5976 10.7617 1.1739 16 1 -3.2537 10.3431 -1.1899 17 1 -5.0182 9.1835 0.0027 18 6 1.0291 7.2593 -0.0062 19 8 1.6488 8.4662 -0.0122 20 6 3.0777 8.4617 -0.0174 21 6 1.7729 6.0973 -0.0009 22 6 3.3242 3.6765 -0.0007 23 6 4.0671 2.5143 -0.0005 24 6 3.4339 1.2835 0.0003 25 17 4.3765 -0.1744 0.0000 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8901 28 1 -0.3633 0.5139 -0.8899 29 1 0.2136 2.3168 0.0093 30 1 -0.7587 3.8248 -0.0003 31 1 -2.0946 5.8635 0.0005 32 1 -3.7337 7.3644 1.6669 33 1 3.4362 7.9440 -0.9072 34 1 3.4443 9.4882 -0.0214 35 1 3.4428 7.9494 0.8728 36 1 2.8518 6.1461 -0.0017 37 1 3.8212 4.6354 -0.0014 38 1 5.1459 2.5649 -0.0008 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241734157.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:06:03 Heat of formation + Delta-G solvation = -53.695503 kcal Electronic energy + Delta-G solvation = -23342.540005 eV Core-core repulsion = 19754.616186 eV Total energy + Delta-G solvation = -3587.923818 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.081 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.23545 -40.39185 -38.66513 -37.79727 -37.20579 -35.64157 -32.92210 -31.56189 -30.61494 -30.36398 -28.29920 -27.94956 -26.73968 -23.93882 -23.63934 -21.98540 -21.79988 -19.53936 -19.12220 -17.90700 -17.48181 -17.35561 -16.77366 -16.73888 -16.25984 -16.20461 -15.90095 -15.21448 -14.99416 -14.69582 -14.51738 -14.25982 -14.09541 -13.73272 -13.45637 -13.08015 -13.00699 -12.82638 -12.66082 -12.54954 -12.40788 -12.23866 -12.16695 -12.03931 -11.82979 -11.50721 -11.49459 -11.31105 -11.08362 -10.04082 -9.43567 -9.03452 -8.81736 -8.59946 -6.23335 -0.16282 0.39939 1.06279 1.12399 1.26539 1.38927 1.49887 1.55353 2.19212 2.28344 2.52495 2.89674 2.93382 3.68190 3.79291 3.83568 4.11640 4.22129 4.36706 4.36810 4.42644 4.46763 4.48240 4.50935 4.55958 4.71838 4.76772 4.84936 4.88778 5.08104 5.13377 5.22430 5.30194 5.43405 5.52486 5.67770 5.79633 5.88517 6.16458 6.21249 6.29963 6.46449 6.70655 6.80602 7.18460 8.23852 Molecular weight = 318.08amu Principal moments of inertia in cm(-1) A = 0.018794 B = 0.003354 C = 0.002873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1489.463165 B = 8347.158082 C = 9744.759591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.320 6.320 3 C 0.140 3.860 4 C -0.222 4.222 5 C 0.040 3.960 6 C -0.175 4.175 7 C -0.098 4.098 8 C -0.174 4.174 9 C 0.074 3.926 10 C -0.465 4.465 11 H 0.076 0.924 12 C 0.035 3.965 13 N -0.811 5.811 14 Si 0.983 3.017 15 H -0.263 1.263 16 H -0.260 1.260 17 H -0.262 1.262 18 C -0.006 4.006 19 O -0.339 6.339 20 C 0.024 3.976 21 C -0.149 4.149 22 C -0.167 4.167 23 C -0.057 4.057 24 C -0.109 4.109 25 Cl -0.066 7.066 26 H 0.127 0.873 27 H 0.058 0.942 28 H 0.060 0.940 29 H 0.140 0.860 30 H 0.112 0.888 31 H 0.112 0.888 32 H 0.293 0.707 33 H 0.054 0.946 34 H 0.112 0.888 35 H 0.051 0.949 36 H 0.133 0.867 37 H 0.141 0.859 38 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.206 -8.300 -1.895 11.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.233 6.233 3 C 0.093 3.907 4 C -0.241 4.241 5 C 0.039 3.961 6 C -0.177 4.177 7 C -0.117 4.117 8 C -0.193 4.193 9 C 0.071 3.929 10 C -0.493 4.493 11 H 0.094 0.906 12 C -0.182 4.182 13 N -0.436 5.436 14 Si 0.803 3.197 15 H -0.188 1.188 16 H -0.183 1.183 17 H -0.186 1.186 18 C -0.050 4.050 19 O -0.254 6.254 20 C -0.071 4.071 21 C -0.167 4.167 22 C -0.186 4.186 23 C -0.075 4.075 24 C -0.136 4.136 25 Cl -0.038 7.038 26 H 0.145 0.855 27 H 0.077 0.923 28 H 0.079 0.921 29 H 0.158 0.842 30 H 0.130 0.870 31 H 0.129 0.871 32 H 0.104 0.896 33 H 0.073 0.927 34 H 0.130 0.870 35 H 0.069 0.931 36 H 0.150 0.850 37 H 0.159 0.841 38 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 7.074 -8.525 -1.740 11.214 hybrid contribution -0.693 0.480 0.056 0.845 sum 6.381 -8.045 -1.684 10.405 Atomic orbital electron populations 1.23350 0.76565 1.05701 1.02027 1.86090 1.23196 1.25677 1.88380 1.18645 0.90760 0.85016 0.96271 1.21301 1.00631 0.90822 1.11378 1.18826 0.93314 0.91644 0.92303 1.18065 0.92348 0.91145 1.16101 1.20665 0.93121 0.97441 1.00444 1.20709 0.99307 0.91182 1.08122 1.17556 0.88954 0.94627 0.91744 1.19707 0.98451 0.96842 1.34299 0.90599 1.26793 0.99814 0.99627 0.91931 1.69853 1.20367 1.31994 1.21359 0.85174 0.76940 0.77718 0.79857 1.18784 1.18346 1.18568 1.19224 0.92121 0.84061 1.09598 1.85916 1.21462 1.27674 1.90353 1.23111 0.78567 1.04349 1.01047 1.20967 0.98943 0.91174 1.05645 1.21218 0.92463 0.98860 1.06014 1.20973 1.01234 0.88807 0.96493 1.20246 0.88541 0.88849 1.15969 1.98316 1.71786 1.36248 1.97405 0.85503 0.92309 0.92148 0.84249 0.86988 0.87059 0.89642 0.92748 0.87008 0.93078 0.84971 0.84131 0.82083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.36 9.81 113.37 1.11 1.48 16 2 O -0.32 -8.88 9.94 -92.77 -0.92 -9.81 16 3 C 0.14 4.28 6.68 22.49 0.15 4.43 16 4 C -0.22 -7.29 8.41 22.62 0.19 -7.10 16 5 C 0.04 1.41 5.88 -20.04 -0.12 1.29 16 6 C -0.18 -7.34 5.89 -19.90 -0.12 -7.45 16 7 C -0.10 -4.38 9.34 22.22 0.21 -4.17 16 8 C -0.17 -8.76 8.61 22.43 0.19 -8.57 16 9 C 0.07 3.93 5.58 -21.18 -0.12 3.81 16 10 C -0.46 -24.73 8.69 23.33 0.20 -24.53 16 11 H 0.08 4.04 7.65 -2.91 -0.02 4.01 16 12 C 0.03 1.70 5.14 85.27 0.44 2.13 16 13 N -0.81 -40.50 10.98 21.84 0.24 -40.26 16 14 Si 0.98 36.95 29.59 68.60 2.03 38.98 16 15 H -0.26 -9.59 7.11 99.48 0.71 -8.88 16 16 H -0.26 -9.71 7.11 99.48 0.71 -9.00 16 17 H -0.26 -9.20 7.11 99.48 0.71 -8.50 16 18 C -0.01 -0.27 6.71 23.01 0.15 -0.12 16 19 O -0.34 -15.06 9.78 -89.88 -0.88 -15.94 16 20 C 0.02 0.74 9.81 113.37 1.11 1.85 16 21 C -0.15 -6.25 8.40 22.54 0.19 -6.06 16 22 C -0.17 -5.04 9.42 22.53 0.21 -4.83 16 23 C -0.06 -1.50 9.81 22.24 0.22 -1.28 16 24 C -0.11 -3.15 6.34 22.49 0.14 -3.00 16 25 Cl -0.07 -1.71 28.49 -2.72 -0.08 -1.79 16 26 H 0.13 1.82 8.14 -2.39 -0.02 1.80 16 27 H 0.06 1.19 7.65 -2.39 -0.02 1.17 16 28 H 0.06 1.20 7.67 -2.39 -0.02 1.18 16 29 H 0.14 4.32 4.40 -2.91 -0.01 4.31 16 30 H 0.11 4.37 6.16 -2.91 -0.02 4.35 16 31 H 0.11 5.79 6.19 -2.91 -0.02 5.78 16 32 H 0.29 13.07 8.30 -92.71 -0.77 12.30 16 33 H 0.05 1.50 7.67 -2.39 -0.02 1.48 16 34 H 0.11 2.71 8.14 -2.38 -0.02 2.69 16 35 H 0.05 1.45 7.65 -2.39 -0.02 1.43 16 36 H 0.13 4.62 4.40 -2.91 -0.01 4.60 16 37 H 0.14 3.78 6.17 -2.91 -0.02 3.76 16 38 H 0.16 3.23 8.06 -2.91 -0.02 3.21 16 Total: -1.00 -60.91 332.88 5.68 -55.23 By element: Atomic # 1 Polarization: 24.59 SS G_CDS: 1.11 Total: 25.71 kcal Atomic # 6 Polarization: -56.30 SS G_CDS: 4.17 Total: -52.13 kcal Atomic # 7 Polarization: -40.50 SS G_CDS: 0.24 Total: -40.26 kcal Atomic # 8 Polarization: -23.94 SS G_CDS: -1.80 Total: -25.74 kcal Atomic # 14 Polarization: 36.95 SS G_CDS: 2.03 Total: 38.98 kcal Atomic # 17 Polarization: -1.71 SS G_CDS: -0.08 Total: -1.79 kcal Total: -60.91 5.68 -55.23 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241734157.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.539 kcal (2) G-P(sol) polarization free energy of solvation -60.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.235 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds