Wall clock time and date at job start Tue Mar 31 2020 11:55:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42909 * 109.46682 * 2 1 4 4 C 1.35879 * 116.99870 * 179.97438 * 3 2 1 5 5 C 1.38871 * 119.91901 * 180.02562 * 4 3 2 6 6 C 1.37882 * 120.09311 * 179.97438 * 5 4 3 7 7 C 1.39433 * 119.94421 * 359.97438 * 6 5 4 8 8 C 1.48245 * 120.08092 * 179.97438 * 7 6 5 9 9 C 1.39304 * 120.16063 * 64.72249 * 8 7 6 10 10 C 1.38018 * 119.94138 * 179.67660 * 9 8 7 11 11 C 1.38447 * 120.26957 * 0.62683 * 10 9 8 12 12 C 1.38122 * 120.32931 * 359.67491 * 11 10 9 13 13 C 1.38742 * 120.05095 * 0.02562 * 12 11 10 14 14 O 1.35668 * 120.13901 * 180.02562 * 13 12 11 15 15 C 1.34812 * 116.99847 * 354.39467 * 14 13 12 16 16 H 1.08000 * 120.00196 * 5.06972 * 15 14 13 17 17 C 1.38641 * 120.00299 * 185.06133 * 15 14 13 18 18 N 1.31567 * 119.99733 * 0.02562 * 17 15 14 19 19 Si 1.86793 * 120.00147 * 180.02562 * 17 15 14 20 20 H 1.48505 * 109.47464 * 0.02562 * 19 17 15 21 21 H 1.48496 * 109.47334 * 120.00417 * 19 17 15 22 22 H 1.48508 * 109.47171 * 240.00253 * 19 17 15 23 23 C 1.39528 * 119.84326 * 0.02562 * 7 6 5 24 24 Cl 1.73603 * 120.04856 * 179.97438 * 23 7 6 25 25 C 1.38045 * 119.90393 * 359.74095 * 23 7 6 26 26 H 1.08993 * 109.47471 * 299.99998 * 1 2 3 27 27 H 1.08996 * 109.47231 * 60.00408 * 1 2 3 28 28 H 1.09006 * 109.46873 * 180.02562 * 1 2 3 29 29 H 1.08993 * 109.47210 * 240.00485 * 2 1 3 30 30 H 1.08996 * 109.47231 * 119.99591 * 2 1 3 31 31 H 1.07997 * 119.95305 * 359.97438 * 5 4 3 32 32 H 1.07997 * 120.02888 * 179.97438 * 6 5 4 33 33 H 1.07993 * 120.02874 * 0.02562 * 9 8 7 34 34 H 1.08001 * 119.86737 * 180.34053 * 10 9 8 35 35 H 1.08001 * 119.83558 * 179.69128 * 11 10 9 36 36 H 1.07996 * 119.97496 * 180.02562 * 12 11 10 37 37 H 0.96999 * 120.00063 * 180.02562 * 18 17 15 38 38 H 1.07998 * 119.96847 * 180.25424 * 25 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3474 0.0000 4 6 3.3533 1.5255 0.0005 5 6 3.8822 2.8096 0.0011 6 6 5.2486 2.9944 0.0022 7 6 6.1003 1.8905 0.0033 8 6 7.5698 2.0857 0.0039 9 6 8.1954 2.6884 1.0929 10 6 9.5646 2.8619 1.0916 11 6 10.3190 2.4510 0.0059 12 6 9.7097 1.8579 -1.0825 13 6 8.3349 1.6712 -1.0928 14 8 7.7346 1.0883 -2.1607 15 6 8.5124 0.8186 -3.2282 16 1 9.5775 0.9901 -3.1774 17 6 7.9452 0.3207 -4.3912 18 7 6.6477 0.1121 -4.4532 19 14 9.0232 -0.0538 -5.8701 20 1 10.4369 0.2648 -5.5456 21 1 8.9074 -1.4934 -6.2152 22 1 8.5823 0.7691 -7.0250 23 6 5.5662 0.6015 0.0027 24 17 6.6217 -0.7768 0.0033 25 6 4.1972 0.4237 0.0065 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8933 -0.5137 -0.8900 30 1 1.8933 -0.5137 0.8900 31 1 3.2224 3.6645 0.0007 32 1 5.6588 3.9935 0.0022 33 1 7.6101 3.0144 1.9399 34 1 10.0489 3.3243 1.9389 35 1 11.3894 2.5947 0.0102 36 1 10.3038 1.5391 -1.9261 37 1 6.2508 -0.2366 -5.2667 38 1 3.7827 -0.5735 0.0102 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241852953.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:55:09 Heat of formation + Delta-G solvation = -39.788731 kcal Electronic energy + Delta-G solvation = -23815.230432 eV Core-core repulsion = 20227.909657 eV Total energy + Delta-G solvation = -3587.320775 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.081 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.30215 -40.56282 -38.72028 -37.83671 -37.12493 -34.22946 -33.39333 -32.30181 -31.67565 -30.60012 -29.01076 -27.24371 -25.11624 -24.07974 -23.28539 -22.59120 -21.87663 -19.72034 -19.41904 -18.76241 -17.25335 -17.08778 -17.04520 -16.29498 -16.21274 -15.90499 -15.42513 -15.36263 -14.93306 -14.74075 -14.59610 -14.54628 -14.22718 -13.54561 -13.52809 -13.45730 -13.16641 -13.00570 -12.77994 -12.49735 -12.30786 -12.27265 -12.19111 -12.09858 -11.94856 -11.77334 -11.47550 -11.09574 -10.74765 -9.87364 -9.71662 -9.11840 -8.72063 -8.39207 -6.03804 0.13939 0.23458 0.69785 0.85505 1.28805 1.35069 1.42530 1.51099 2.19064 2.19903 2.62923 2.90472 3.24259 3.57886 3.79889 3.82073 3.96217 4.02610 4.17275 4.24901 4.31448 4.32491 4.37955 4.52911 4.60553 4.69875 4.76680 4.87077 4.93965 5.01862 5.10281 5.16170 5.20162 5.25145 5.38404 5.43200 5.59642 5.74032 5.78363 5.82903 6.08590 6.29158 6.34819 7.05631 7.89170 8.82040 Molecular weight = 318.08amu Principal moments of inertia in cm(-1) A = 0.010880 B = 0.005376 C = 0.004077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2572.901739 B = 5206.780602 C = 6865.930738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.040 3.960 3 O -0.319 6.319 4 C 0.131 3.869 5 C -0.149 4.149 6 C -0.063 4.063 7 C -0.063 4.063 8 C -0.139 4.139 9 C -0.058 4.058 10 C -0.195 4.195 11 C -0.068 4.068 12 C -0.255 4.255 13 C 0.140 3.860 14 O -0.198 6.198 15 C -0.408 4.408 16 H 0.095 0.905 17 C -0.014 4.014 18 N -0.907 5.907 19 Si 1.006 2.994 20 H -0.254 1.254 21 H -0.273 1.273 22 H -0.271 1.271 23 C 0.012 3.988 24 Cl -0.072 7.072 25 C -0.210 4.210 26 H 0.072 0.928 27 H 0.063 0.937 28 H 0.099 0.901 29 H 0.055 0.945 30 H 0.072 0.928 31 H 0.161 0.839 32 H 0.156 0.844 33 H 0.144 0.856 34 H 0.150 0.850 35 H 0.141 0.859 36 H 0.115 0.885 37 H 0.268 0.732 38 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.554 2.882 10.902 12.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.034 4.034 3 O -0.233 6.233 4 C 0.085 3.915 5 C -0.168 4.168 6 C -0.081 4.081 7 C -0.064 4.064 8 C -0.141 4.141 9 C -0.076 4.076 10 C -0.214 4.214 11 C -0.086 4.086 12 C -0.275 4.275 13 C 0.089 3.911 14 O -0.103 6.103 15 C -0.485 4.485 16 H 0.112 0.888 17 C -0.213 4.213 18 N -0.545 5.545 19 Si 0.827 3.173 20 H -0.178 1.178 21 H -0.198 1.198 22 H -0.196 1.196 23 C -0.015 4.015 24 Cl -0.043 7.043 25 C -0.230 4.230 26 H 0.091 0.909 27 H 0.082 0.918 28 H 0.118 0.882 29 H 0.074 0.926 30 H 0.090 0.910 31 H 0.178 0.822 32 H 0.174 0.826 33 H 0.162 0.838 34 H 0.168 0.832 35 H 0.159 0.841 36 H 0.133 0.867 37 H 0.077 0.923 38 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -6.012 2.735 10.712 12.585 hybrid contribution 0.750 -0.982 -1.146 1.685 sum -5.262 1.753 9.566 11.058 Atomic orbital electron populations 1.21781 0.90448 1.04279 1.03548 1.23097 0.97588 0.80918 1.01823 1.86040 1.17703 1.30996 1.88557 1.18904 0.82611 0.93585 0.96380 1.20652 0.95040 0.95311 1.05760 1.21215 0.91820 0.98487 0.96560 1.18604 0.93178 0.91464 1.03180 1.17972 0.90990 1.09386 0.95712 1.21106 0.95195 0.95649 0.95607 1.21039 0.93399 1.06831 1.00088 1.21200 1.00388 0.94903 0.92146 1.21245 0.94039 1.10056 1.02132 1.19803 0.91906 0.90912 0.88524 1.83990 1.37265 1.67761 1.21248 1.21740 0.91933 1.44508 0.90286 0.88802 1.26311 0.97647 0.96522 1.00781 1.70211 1.11817 1.43669 1.28773 0.84698 0.78024 0.78189 0.76410 1.17781 1.19813 1.19601 1.20917 0.90729 0.88310 1.01566 1.98343 1.66770 1.42648 1.96513 1.21066 0.91625 0.99896 1.10381 0.90925 0.91824 0.88239 0.92645 0.91017 0.82160 0.82632 0.83845 0.83236 0.84141 0.86677 0.92337 0.84019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.35 10.28 71.98 0.74 -1.61 16 2 C 0.04 0.93 5.46 71.98 0.39 1.32 16 3 O -0.32 -9.33 10.13 -92.19 -0.93 -10.27 16 4 C 0.13 4.38 6.69 22.55 0.15 4.53 16 5 C -0.15 -4.67 9.97 22.34 0.22 -4.45 16 6 C -0.06 -2.14 9.72 22.47 0.22 -1.92 16 7 C -0.06 -2.58 4.95 -20.02 -0.10 -2.68 16 8 C -0.14 -5.82 4.67 -19.93 -0.09 -5.91 16 9 C -0.06 -1.93 9.73 22.47 0.22 -1.71 16 10 C -0.20 -5.94 10.03 22.27 0.22 -5.72 16 11 C -0.07 -2.33 10.03 22.29 0.22 -2.11 16 12 C -0.26 -11.12 9.16 22.36 0.20 -10.92 16 13 C 0.14 6.84 5.90 22.82 0.13 6.97 16 14 O -0.20 -11.38 8.19 -21.66 -0.18 -11.55 16 15 C -0.41 -23.42 9.49 67.92 0.64 -22.77 16 16 H 0.09 5.05 5.21 -2.91 -0.02 5.03 16 17 C -0.01 -0.79 5.49 84.83 0.47 -0.33 16 18 N -0.91 -55.02 13.67 21.61 0.30 -54.73 16 19 Si 1.01 43.39 29.55 68.60 2.03 45.41 16 20 H -0.25 -10.23 7.11 99.48 0.71 -9.52 16 21 H -0.27 -11.42 7.11 99.48 0.71 -10.72 16 22 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 23 C 0.01 0.49 6.08 22.54 0.14 0.62 16 24 Cl -0.07 -3.15 26.64 -2.72 -0.07 -3.22 16 25 C -0.21 -7.73 8.80 22.36 0.20 -7.54 16 26 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 27 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 28 H 0.10 1.18 8.14 -2.38 -0.02 1.16 16 29 H 0.06 1.38 7.67 -2.39 -0.02 1.36 16 30 H 0.07 1.49 7.64 -2.39 -0.02 1.47 16 31 H 0.16 3.97 8.06 -2.91 -0.02 3.94 16 32 H 0.16 4.46 8.06 -2.91 -0.02 4.44 16 33 H 0.14 3.86 8.06 -2.91 -0.02 3.84 16 34 H 0.15 3.34 8.06 -2.91 -0.02 3.32 16 35 H 0.14 3.78 8.06 -2.91 -0.02 3.76 16 36 H 0.12 5.16 5.64 -2.91 -0.02 5.14 16 37 H 0.27 15.05 8.31 -92.71 -0.77 14.28 16 38 H 0.14 4.70 6.28 -2.91 -0.02 4.68 16 Total: -1.00 -71.03 341.41 6.21 -64.82 By element: Atomic # 1 Polarization: 22.66 SS G_CDS: 1.09 Total: 23.74 kcal Atomic # 6 Polarization: -58.19 SS G_CDS: 3.98 Total: -54.21 kcal Atomic # 7 Polarization: -55.02 SS G_CDS: 0.30 Total: -54.73 kcal Atomic # 8 Polarization: -20.71 SS G_CDS: -1.11 Total: -21.82 kcal Atomic # 14 Polarization: 43.39 SS G_CDS: 2.03 Total: 45.41 kcal Atomic # 17 Polarization: -3.15 SS G_CDS: -0.07 Total: -3.22 kcal Total: -71.03 6.21 -64.82 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241852953.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.029 kcal (2) G-P(sol) polarization free energy of solvation -71.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.818 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds