Wall clock time and date at job start Tue Mar 31 2020 12:05:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35880 * 116.99944 * 2 1 4 4 C 1.39470 * 119.77595 * 0.02562 * 3 2 1 5 5 C 1.37942 * 120.62146 * 180.02562 * 4 3 2 6 6 C 1.39186 * 120.15903 * 359.69117 * 5 4 3 7 7 C 1.47813 * 120.21850 * 180.28473 * 6 5 4 8 8 C 1.39729 * 120.13473 * 65.25289 * 7 6 5 9 9 C 1.37905 * 119.96762 * 179.97438 * 8 7 6 10 10 C 1.38369 * 120.23655 * 359.97438 * 9 8 7 11 11 C 1.38805 * 120.26270 * 359.97438 * 10 9 8 12 12 O 1.35935 * 119.98379 * 180.02562 * 11 10 9 13 13 C 1.42901 * 116.99852 * 359.97438 * 12 11 10 14 14 C 1.38573 * 120.03156 * 359.76657 * 11 10 9 15 15 Cl 1.73595 * 120.11798 * 180.27349 * 14 11 10 16 16 C 1.41902 * 119.56083 * 0.53707 * 6 5 4 17 17 C 1.40881 * 120.30139 * 179.76861 * 16 6 5 18 18 H 1.07999 * 120.00146 * 22.39826 * 17 16 6 19 19 C 1.40050 * 119.99749 * 202.12810 * 17 16 6 20 20 N 1.30789 * 119.99454 * 206.04777 * 19 17 16 21 21 Si 1.86798 * 120.00077 * 26.04350 * 19 17 16 22 22 H 1.48496 * 109.46991 * 5.07152 * 21 19 17 23 23 H 1.48502 * 109.46823 * 125.07381 * 21 19 17 24 24 H 1.48505 * 109.47024 * 245.07072 * 21 19 17 25 25 C 1.37915 * 119.77931 * 179.97438 * 3 2 1 26 26 H 1.09001 * 109.47315 * 60.00576 * 1 2 3 27 27 H 1.09003 * 109.46824 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47370 * 300.00096 * 1 2 3 29 29 H 1.08006 * 119.69147 * 359.97438 * 4 3 2 30 30 H 1.07999 * 119.92096 * 179.97438 * 5 4 3 31 31 H 1.08001 * 120.01777 * 0.02925 * 8 7 6 32 32 H 1.08001 * 119.88014 * 179.97438 * 9 8 7 33 33 H 1.07997 * 119.86952 * 180.02562 * 10 9 8 34 34 H 1.09004 * 109.46868 * 180.02562 * 13 12 11 35 35 H 1.09004 * 109.46785 * 300.00112 * 13 12 11 36 36 H 1.08994 * 109.46997 * 60.00076 * 13 12 11 37 37 H 0.96992 * 120.00445 * 359.97438 * 20 19 17 38 38 H 1.07997 * 120.09352 * 0.02562 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0458 1.2107 0.0000 4 6 1.2817 2.3774 0.0005 5 6 1.8897 3.6156 0.0000 6 6 3.2781 3.7128 0.0054 7 6 3.9310 5.0389 0.0112 8 6 3.7829 5.8889 1.1103 9 6 4.3940 7.1252 1.1123 10 6 5.1549 7.5281 0.0291 11 6 5.3093 6.6911 -1.0674 12 8 6.0585 7.0924 -2.1282 13 6 6.6569 8.3875 -2.0469 14 6 4.7046 5.4443 -1.0787 15 17 4.9021 4.3928 -2.4458 16 6 4.0627 2.5305 -0.0001 17 6 5.4692 2.6107 0.0003 18 1 5.9591 3.5031 0.3610 19 6 6.2323 1.5310 -0.4616 20 7 7.4523 1.3576 -0.0232 21 14 5.5077 0.3387 -1.7036 22 1 4.1691 0.8203 -2.1293 23 1 6.4018 0.2517 -2.8861 24 1 5.3763 -1.0038 -1.0825 25 6 3.4234 1.2776 0.0005 26 1 -0.3634 0.5137 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 0.2036 2.3108 0.0005 30 1 1.2869 4.5117 0.0000 31 1 3.1909 5.5776 1.9582 32 1 4.2783 7.7812 1.9624 33 1 5.6312 8.4974 0.0371 34 1 7.2251 8.5830 -2.9564 35 1 5.8775 9.1416 -1.9367 36 1 7.3241 8.4261 -1.1859 37 1 7.8287 1.9769 0.6215 38 1 4.0095 0.3706 0.0005 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241859221.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:05:50 Heat of formation + Delta-G solvation = -40.794280 kcal Electronic energy + Delta-G solvation = -24262.812724 eV Core-core repulsion = 20675.448345 eV Total energy + Delta-G solvation = -3587.364379 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.081 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -39.79479 -38.95297 -37.50284 -36.06356 -35.43714 -33.68359 -31.23093 -30.39061 -29.90774 -28.27818 -27.10749 -26.31866 -24.73903 -22.37009 -22.08213 -21.12051 -19.78047 -18.30131 -17.63709 -16.66064 -16.04822 -15.74144 -15.58887 -15.30793 -15.00240 -14.79910 -13.98583 -13.76461 -13.65063 -13.50986 -13.18496 -12.62343 -12.44803 -12.25851 -11.97164 -11.66076 -11.59061 -11.38141 -11.09497 -11.03775 -10.87892 -10.62460 -10.51872 -10.36016 -10.01057 -9.85943 -9.76105 -9.47833 -9.03946 -8.14431 -7.73662 -7.72401 -7.38585 -6.99401 -4.56717 1.61523 1.78242 2.65338 2.72317 3.05128 3.28290 3.39260 3.50162 3.61982 4.04592 4.10364 4.12069 4.47302 5.02895 5.17953 5.21317 5.28697 5.36270 5.50548 5.53651 5.60715 5.62339 5.70669 5.79934 5.89848 5.98808 6.17570 6.24631 6.46837 6.63557 6.65737 6.72445 6.96105 7.03824 7.13910 7.44207 7.47327 7.55906 7.61301 7.64435 7.78977 8.17035 8.47842 8.54014 8.71940 9.89625 Molecular weight = 318.08amu Principal moments of inertia in cm(-1) A = 0.013693 B = 0.005957 C = 0.004814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2044.413246 B = 4698.973803 C = 5814.577898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.331 6.331 3 C 0.165 3.835 4 C -0.333 4.333 5 C -0.018 4.018 6 C -0.212 4.212 7 C 0.067 3.933 8 C -0.149 4.149 9 C -0.085 4.085 10 C -0.222 4.222 11 C 0.126 3.874 12 O -0.308 6.308 13 C 0.030 3.970 14 C -0.050 4.050 15 Cl -0.044 7.044 16 C 0.143 3.857 17 C -0.475 4.475 18 H 0.082 0.918 19 C 0.055 3.945 20 N -0.792 5.792 21 Si 1.047 2.953 22 H -0.245 1.245 23 H -0.289 1.289 24 H -0.276 1.276 25 C -0.260 4.260 26 H 0.048 0.952 27 H 0.085 0.915 28 H 0.047 0.953 29 H 0.100 0.900 30 H 0.096 0.904 31 H 0.125 0.875 32 H 0.121 0.879 33 H 0.125 0.875 34 H 0.096 0.904 35 H 0.052 0.948 36 H 0.052 0.948 37 H 0.290 0.710 38 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.311 8.962 -0.817 10.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.245 6.245 3 C 0.120 3.880 4 C -0.352 4.352 5 C -0.036 4.036 6 C -0.213 4.213 7 C 0.066 3.934 8 C -0.168 4.168 9 C -0.103 4.103 10 C -0.241 4.241 11 C 0.080 3.920 12 O -0.222 6.222 13 C -0.066 4.066 14 C -0.078 4.078 15 Cl -0.015 7.015 16 C 0.139 3.861 17 C -0.501 4.501 18 H 0.100 0.900 19 C -0.168 4.168 20 N -0.412 5.412 21 Si 0.872 3.128 22 H -0.168 1.168 23 H -0.217 1.217 24 H -0.202 1.202 25 C -0.279 4.279 26 H 0.066 0.934 27 H 0.103 0.897 28 H 0.066 0.934 29 H 0.118 0.882 30 H 0.114 0.886 31 H 0.143 0.857 32 H 0.139 0.861 33 H 0.143 0.857 34 H 0.114 0.886 35 H 0.070 0.930 36 H 0.071 0.929 37 H 0.101 0.899 38 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -4.705 7.250 -1.943 8.859 hybrid contribution -0.278 1.794 1.110 2.128 sum -4.983 9.044 -0.833 10.360 Atomic orbital electron populations 1.22809 0.80203 1.02159 1.00824 1.85995 1.20057 1.29031 1.89396 1.18785 0.91871 0.82739 0.94561 1.20230 0.97434 0.92097 1.25480 1.20302 0.92869 0.95462 0.95016 1.18163 0.92067 0.90105 1.20970 1.18479 0.91738 0.93226 0.89919 1.21220 1.03083 0.94177 0.98314 1.20785 0.96248 0.96106 0.97185 1.20984 1.07163 1.00729 0.95210 1.18624 0.93080 0.92722 0.87589 1.86163 1.62855 1.34475 1.38666 1.22992 0.97289 0.83157 1.03139 1.20416 1.04138 0.90174 0.93043 1.98339 1.96216 1.65439 1.41486 1.17157 0.92889 0.88872 0.87145 1.20542 0.91303 1.02601 1.35686 0.90012 1.27258 0.94329 0.97768 0.97491 1.70524 1.16081 1.32958 1.21665 0.83958 0.77579 0.75500 0.75775 1.16821 1.21694 1.20162 1.19915 0.90318 0.97064 1.20631 0.93377 0.89675 0.93392 0.88156 0.88626 0.85655 0.86135 0.85719 0.88555 0.92982 0.92899 0.89874 0.88060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.53 9.80 101.05 0.99 1.52 16 2 O -0.33 -6.81 10.48 -19.36 -0.20 -7.01 16 3 C 0.16 3.75 6.67 -39.24 -0.26 3.48 16 4 C -0.33 -6.95 9.02 -39.23 -0.35 -7.31 16 5 C -0.02 -0.38 9.71 -39.34 -0.38 -0.76 16 6 C -0.21 -4.82 4.71 -104.23 -0.49 -5.32 16 7 C 0.07 1.41 4.37 -104.89 -0.46 0.95 16 8 C -0.15 -2.68 9.74 -39.15 -0.38 -3.06 16 9 C -0.08 -1.30 10.02 -39.66 -0.40 -1.70 16 10 C -0.22 -3.44 9.04 -39.32 -0.36 -3.79 16 11 C 0.13 2.30 6.67 -39.25 -0.26 2.04 16 12 O -0.31 -5.22 9.95 -19.54 -0.19 -5.41 16 13 C 0.03 0.33 9.81 101.05 0.99 1.33 16 14 C -0.05 -1.05 5.63 -38.92 -0.22 -1.27 16 15 Cl -0.04 -0.97 25.66 -51.86 -1.33 -2.30 16 16 C 0.14 3.57 4.71 -106.58 -0.50 3.07 16 17 C -0.47 -12.28 7.04 -37.90 -0.27 -12.55 16 18 H 0.08 2.23 7.09 -52.49 -0.37 1.86 16 19 C 0.06 1.43 5.33 -17.32 -0.09 1.34 16 20 N -0.79 -20.92 13.66 55.55 0.76 -20.16 16 21 Si 1.05 24.85 25.24 -169.99 -4.29 20.56 16 22 H -0.24 -5.85 6.03 56.52 0.34 -5.51 16 23 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 24 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 25 C -0.26 -6.44 6.82 -38.79 -0.26 -6.71 16 26 H 0.05 0.67 7.65 -51.93 -0.40 0.28 16 27 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 28 H 0.05 0.66 7.64 -51.93 -0.40 0.26 16 29 H 0.10 1.82 6.25 -52.48 -0.33 1.49 16 30 H 0.10 1.77 8.06 -52.49 -0.42 1.35 16 31 H 0.13 2.08 8.06 -52.49 -0.42 1.65 16 32 H 0.12 1.44 8.06 -52.49 -0.42 1.02 16 33 H 0.12 1.52 6.28 -52.49 -0.33 1.19 16 34 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.05 0.50 7.66 -51.93 -0.40 0.11 16 36 H 0.05 0.55 7.65 -51.93 -0.40 0.15 16 37 H 0.29 7.44 8.72 -40.82 -0.36 7.08 16 38 H 0.10 2.55 4.66 -52.49 -0.24 2.31 16 LS Contribution 328.39 15.07 4.95 4.95 Total: -1.00 -28.87 328.39 -7.21 -36.08 By element: Atomic # 1 Polarization: 6.23 SS G_CDS: -4.19 Total: 2.04 kcal Atomic # 6 Polarization: -26.03 SS G_CDS: -2.71 Total: -28.74 kcal Atomic # 7 Polarization: -20.92 SS G_CDS: 0.76 Total: -20.16 kcal Atomic # 8 Polarization: -12.03 SS G_CDS: -0.40 Total: -12.43 kcal Atomic # 14 Polarization: 24.85 SS G_CDS: -4.29 Total: 20.56 kcal Atomic # 17 Polarization: -0.97 SS G_CDS: -1.33 Total: -2.30 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -28.87 -7.21 -36.08 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241859221.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.719 kcal (2) G-P(sol) polarization free energy of solvation -28.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.075 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds