Wall clock time and date at job start Tue Mar 31 2020 12:05:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35880 * 116.99944 * 2 1 4 4 C 1.39470 * 119.77595 * 0.02562 * 3 2 1 5 5 C 1.37942 * 120.62146 * 180.02562 * 4 3 2 6 6 C 1.39186 * 120.15903 * 359.69117 * 5 4 3 7 7 C 1.47813 * 120.21850 * 180.28473 * 6 5 4 8 8 C 1.39729 * 120.13473 * 65.25289 * 7 6 5 9 9 C 1.37905 * 119.96762 * 179.97438 * 8 7 6 10 10 C 1.38369 * 120.23655 * 359.97438 * 9 8 7 11 11 C 1.38805 * 120.26270 * 359.97438 * 10 9 8 12 12 O 1.35935 * 119.98379 * 180.02562 * 11 10 9 13 13 C 1.42901 * 116.99852 * 359.97438 * 12 11 10 14 14 C 1.38573 * 120.03156 * 359.76657 * 11 10 9 15 15 Cl 1.73595 * 120.11798 * 180.27349 * 14 11 10 16 16 C 1.41902 * 119.56083 * 0.53707 * 6 5 4 17 17 C 1.40881 * 120.30139 * 179.76861 * 16 6 5 18 18 H 1.07999 * 120.00146 * 22.39826 * 17 16 6 19 19 C 1.40050 * 119.99749 * 202.12810 * 17 16 6 20 20 N 1.30789 * 119.99454 * 206.04777 * 19 17 16 21 21 Si 1.86798 * 120.00077 * 26.04350 * 19 17 16 22 22 H 1.48496 * 109.46991 * 5.07152 * 21 19 17 23 23 H 1.48502 * 109.46823 * 125.07381 * 21 19 17 24 24 H 1.48505 * 109.47024 * 245.07072 * 21 19 17 25 25 C 1.37915 * 119.77931 * 179.97438 * 3 2 1 26 26 H 1.09001 * 109.47315 * 60.00576 * 1 2 3 27 27 H 1.09003 * 109.46824 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47370 * 300.00096 * 1 2 3 29 29 H 1.08006 * 119.69147 * 359.97438 * 4 3 2 30 30 H 1.07999 * 119.92096 * 179.97438 * 5 4 3 31 31 H 1.08001 * 120.01777 * 0.02925 * 8 7 6 32 32 H 1.08001 * 119.88014 * 179.97438 * 9 8 7 33 33 H 1.07997 * 119.86952 * 180.02562 * 10 9 8 34 34 H 1.09004 * 109.46868 * 180.02562 * 13 12 11 35 35 H 1.09004 * 109.46785 * 300.00112 * 13 12 11 36 36 H 1.08994 * 109.46997 * 60.00076 * 13 12 11 37 37 H 0.96992 * 120.00445 * 359.97438 * 20 19 17 38 38 H 1.07997 * 120.09352 * 0.02562 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0458 1.2107 0.0000 4 6 1.2817 2.3774 0.0005 5 6 1.8897 3.6156 0.0000 6 6 3.2781 3.7128 0.0054 7 6 3.9310 5.0389 0.0112 8 6 3.7829 5.8889 1.1103 9 6 4.3940 7.1252 1.1123 10 6 5.1549 7.5281 0.0291 11 6 5.3093 6.6911 -1.0674 12 8 6.0585 7.0924 -2.1282 13 6 6.6569 8.3875 -2.0469 14 6 4.7046 5.4443 -1.0787 15 17 4.9021 4.3928 -2.4458 16 6 4.0627 2.5305 -0.0001 17 6 5.4692 2.6107 0.0003 18 1 5.9591 3.5031 0.3610 19 6 6.2323 1.5310 -0.4616 20 7 7.4523 1.3576 -0.0232 21 14 5.5077 0.3387 -1.7036 22 1 4.1691 0.8203 -2.1293 23 1 6.4018 0.2517 -2.8861 24 1 5.3763 -1.0038 -1.0825 25 6 3.4234 1.2776 0.0005 26 1 -0.3634 0.5137 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 0.2036 2.3108 0.0005 30 1 1.2869 4.5117 0.0000 31 1 3.1909 5.5776 1.9582 32 1 4.2783 7.7812 1.9624 33 1 5.6312 8.4974 0.0371 34 1 7.2251 8.5830 -2.9564 35 1 5.8775 9.1416 -1.9367 36 1 7.3241 8.4261 -1.1859 37 1 7.8287 1.9769 0.6215 38 1 4.0095 0.3706 0.0005 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241859221.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:05:50 Heat of formation + Delta-G solvation = -57.248525 kcal Electronic energy + Delta-G solvation = -24263.526234 eV Core-core repulsion = 20675.448345 eV Total energy + Delta-G solvation = -3588.077889 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.081 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.13827 -40.52815 -38.92953 -37.59449 -36.98965 -35.54624 -32.71564 -32.17289 -31.21583 -29.75614 -28.17980 -27.66188 -26.50574 -23.91386 -23.48279 -22.74423 -21.33578 -20.15384 -18.96517 -18.32373 -17.35336 -17.10705 -16.93023 -16.65684 -16.42913 -16.36131 -15.75053 -15.43272 -15.07714 -14.77160 -14.70081 -14.23948 -13.97352 -13.63147 -13.51074 -13.26206 -12.91927 -12.83741 -12.68466 -12.41844 -12.26254 -12.03967 -11.98547 -11.93075 -11.69389 -11.58810 -11.38896 -11.26480 -10.92378 -9.59152 -9.58323 -9.31835 -9.08527 -8.68329 -6.47991 0.21113 0.42798 0.87361 0.95672 1.33117 1.49197 1.58138 1.71012 2.13920 2.35573 2.57913 2.67499 2.76287 3.52521 3.90189 4.00906 4.20834 4.24059 4.34441 4.41055 4.41827 4.47360 4.48763 4.52043 4.64575 4.72330 4.74713 4.83024 4.90127 4.97375 5.18905 5.28022 5.39551 5.51084 5.56488 5.64449 5.76944 5.83482 5.92160 6.03509 6.31822 6.41257 6.62922 6.78374 6.90785 7.94347 Molecular weight = 318.08amu Principal moments of inertia in cm(-1) A = 0.013693 B = 0.005957 C = 0.004814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2044.413246 B = 4698.973803 C = 5814.577898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.350 6.350 3 C 0.159 3.841 4 C -0.317 4.317 5 C -0.025 4.025 6 C -0.210 4.210 7 C 0.036 3.964 8 C -0.158 4.158 9 C -0.071 4.071 10 C -0.210 4.210 11 C 0.118 3.882 12 O -0.333 6.333 13 C 0.018 3.982 14 C -0.080 4.080 15 Cl -0.072 7.072 16 C 0.130 3.870 17 C -0.489 4.489 18 H 0.056 0.944 19 C 0.032 3.968 20 N -0.823 5.823 21 Si 1.070 2.930 22 H -0.252 1.252 23 H -0.283 1.283 24 H -0.270 1.270 25 C -0.288 4.288 26 H 0.058 0.942 27 H 0.117 0.883 28 H 0.061 0.939 29 H 0.136 0.864 30 H 0.126 0.874 31 H 0.136 0.864 32 H 0.165 0.835 33 H 0.165 0.835 34 H 0.116 0.884 35 H 0.073 0.927 36 H 0.064 0.936 37 H 0.284 0.716 38 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.571 11.320 -0.143 13.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.264 6.264 3 C 0.114 3.886 4 C -0.337 4.337 5 C -0.043 4.043 6 C -0.211 4.211 7 C 0.035 3.965 8 C -0.176 4.176 9 C -0.089 4.089 10 C -0.229 4.229 11 C 0.072 3.928 12 O -0.247 6.247 13 C -0.076 4.076 14 C -0.107 4.107 15 Cl -0.043 7.043 16 C 0.127 3.873 17 C -0.517 4.517 18 H 0.074 0.926 19 C -0.186 4.186 20 N -0.445 5.445 21 Si 0.893 3.107 22 H -0.176 1.176 23 H -0.210 1.210 24 H -0.196 1.196 25 C -0.308 4.308 26 H 0.077 0.923 27 H 0.135 0.865 28 H 0.080 0.920 29 H 0.153 0.847 30 H 0.144 0.856 31 H 0.154 0.846 32 H 0.183 0.817 33 H 0.182 0.818 34 H 0.134 0.866 35 H 0.092 0.908 36 H 0.082 0.918 37 H 0.094 0.906 38 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -6.974 9.611 -1.272 11.943 hybrid contribution 0.172 1.253 0.937 1.574 sum -6.803 10.864 -0.335 12.823 Atomic orbital electron populations 1.23224 0.77009 1.04857 1.01941 1.85973 1.23321 1.28068 1.89037 1.18894 0.91521 0.84273 0.93931 1.20666 0.99165 0.91266 1.22559 1.20692 0.92536 0.96817 0.94250 1.18491 0.92959 0.90548 1.19149 1.18579 0.93278 0.93229 0.91411 1.21414 1.03721 0.94925 0.97586 1.21262 0.94114 0.95335 0.98170 1.21465 1.06037 1.01602 0.93782 1.18816 0.92925 0.92282 0.88826 1.86138 1.62794 1.37250 1.38539 1.23377 0.98129 0.81241 1.04849 1.20650 1.05998 0.91255 0.92812 1.98312 1.96481 1.66588 1.42936 1.17342 0.92805 0.89984 0.87161 1.20226 0.91843 1.01757 1.37851 0.92562 1.27781 0.94375 0.98576 0.97869 1.70564 1.16934 1.33661 1.23360 0.83643 0.76899 0.74959 0.75200 1.17594 1.21034 1.19557 1.20006 0.91731 0.96607 1.22474 0.92298 0.86475 0.92011 0.84660 0.85631 0.84608 0.81733 0.81775 0.86581 0.90825 0.91770 0.90555 0.89470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.63 9.80 113.37 1.11 1.74 16 2 O -0.35 -13.88 10.48 -92.20 -0.97 -14.85 16 3 C 0.16 7.09 6.67 22.49 0.15 7.24 16 4 C -0.32 -12.48 9.02 22.50 0.20 -12.28 16 5 C -0.02 -1.00 9.71 22.43 0.22 -0.78 16 6 C -0.21 -9.58 4.71 -19.61 -0.09 -9.67 16 7 C 0.04 1.50 4.37 -20.04 -0.09 1.41 16 8 C -0.16 -5.34 9.74 22.55 0.22 -5.12 16 9 C -0.07 -1.90 10.02 22.22 0.22 -1.68 16 10 C -0.21 -5.78 9.04 22.44 0.20 -5.57 16 11 C 0.12 4.17 6.67 22.49 0.15 4.32 16 12 O -0.33 -10.93 9.95 -92.82 -0.92 -11.85 16 13 C 0.02 0.36 9.81 113.37 1.11 1.47 16 14 C -0.08 -3.38 5.63 22.70 0.13 -3.25 16 15 Cl -0.07 -3.29 25.66 -2.72 -0.07 -3.36 16 16 C 0.13 6.69 4.71 -21.13 -0.10 6.59 16 17 C -0.49 -26.62 7.04 23.36 0.16 -26.46 16 18 H 0.06 3.27 7.09 -2.91 -0.02 3.25 16 19 C 0.03 1.78 5.33 85.29 0.45 2.23 16 20 N -0.82 -45.88 13.66 21.85 0.30 -45.58 16 21 Si 1.07 52.47 25.24 68.60 1.73 54.20 16 22 H -0.25 -12.48 6.03 99.48 0.60 -11.88 16 23 H -0.28 -13.32 7.11 99.48 0.71 -12.61 16 24 H -0.27 -12.73 7.11 99.48 0.71 -12.03 16 25 C -0.29 -14.62 6.82 22.78 0.16 -14.46 16 26 H 0.06 1.44 7.65 -2.39 -0.02 1.42 16 27 H 0.12 2.33 8.14 -2.39 -0.02 2.31 16 28 H 0.06 1.47 7.64 -2.39 -0.02 1.45 16 29 H 0.14 4.32 6.25 -2.91 -0.02 4.30 16 30 H 0.13 4.26 8.06 -2.91 -0.02 4.23 16 31 H 0.14 4.19 8.06 -2.91 -0.02 4.16 16 32 H 0.17 2.97 8.06 -2.91 -0.02 2.94 16 33 H 0.16 3.15 6.28 -2.91 -0.02 3.13 16 34 H 0.12 1.81 8.14 -2.38 -0.02 1.79 16 35 H 0.07 1.14 7.66 -2.38 -0.02 1.12 16 36 H 0.06 1.13 7.65 -2.39 -0.02 1.11 16 37 H 0.28 15.53 8.72 -92.71 -0.81 14.72 16 38 H 0.09 4.57 4.66 -2.91 -0.01 4.56 16 Total: -1.00 -66.97 328.39 5.23 -61.74 By element: Atomic # 1 Polarization: 13.03 SS G_CDS: 0.95 Total: 13.98 kcal Atomic # 6 Polarization: -58.49 SS G_CDS: 4.21 Total: -54.27 kcal Atomic # 7 Polarization: -45.88 SS G_CDS: 0.30 Total: -45.58 kcal Atomic # 8 Polarization: -24.81 SS G_CDS: -1.89 Total: -26.70 kcal Atomic # 14 Polarization: 52.47 SS G_CDS: 1.73 Total: 54.20 kcal Atomic # 17 Polarization: -3.29 SS G_CDS: -0.07 Total: -3.36 kcal Total: -66.97 5.23 -61.74 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241859221.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.490 kcal (2) G-P(sol) polarization free energy of solvation -66.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.738 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds