Wall clock time and date at job start Tue Mar 31 2020 12:06:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35878 * 116.99706 * 2 1 4 4 C 1.39513 * 119.77517 * 0.02562 * 3 2 1 5 5 C 1.37881 * 120.63489 * 180.02562 * 4 3 2 6 6 C 1.39274 * 120.15227 * 0.02562 * 5 4 3 7 7 C 1.47687 * 120.22325 * 179.97438 * 6 5 4 8 8 C 1.39693 * 120.17380 * 65.23363 * 7 6 5 9 9 C 1.37828 * 119.91142 * 180.22284 * 8 7 6 10 10 C 1.38652 * 120.26821 * 359.51749 * 9 8 7 11 11 Cl 1.73595 * 119.82183 * 180.25072 * 10 9 8 12 12 C 1.38334 * 120.35066 * 0.27517 * 10 9 8 13 13 C 1.38499 * 120.08231 * 359.95799 * 12 10 9 14 14 O 1.35781 * 120.13457 * 180.02562 * 13 12 10 15 15 C 1.42901 * 116.99978 * 359.97438 * 14 13 12 16 16 C 1.41949 * 119.54349 * 0.25355 * 6 5 4 17 17 C 1.40844 * 120.30776 * 179.70571 * 16 6 5 18 18 H 1.07997 * 120.00008 * 25.25092 * 17 16 6 19 19 C 1.40018 * 120.00108 * 205.25854 * 17 16 6 20 20 N 1.30808 * 119.99967 * 15.33540 * 19 17 16 21 21 Si 1.86797 * 120.00063 * 195.33586 * 19 17 16 22 22 H 1.48501 * 109.47154 * 0.02562 * 21 19 17 23 23 H 1.48504 * 109.47142 * 119.99871 * 21 19 17 24 24 H 1.48498 * 109.47101 * 239.99982 * 21 19 17 25 25 C 1.37876 * 119.76644 * 180.02562 * 3 2 1 26 26 H 1.09000 * 109.47007 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47120 * 299.99569 * 1 2 3 28 28 H 1.08993 * 109.47477 * 59.99828 * 1 2 3 29 29 H 1.08002 * 119.67793 * 359.97183 * 4 3 2 30 30 H 1.07993 * 119.92162 * 179.97438 * 5 4 3 31 31 H 1.08003 * 120.04610 * 0.02562 * 8 7 6 32 32 H 1.08001 * 119.86132 * 179.78692 * 9 8 7 33 33 H 1.08001 * 119.95727 * 179.97438 * 12 10 9 34 34 H 1.09008 * 109.46969 * 180.02562 * 15 14 13 35 35 H 1.08999 * 109.47259 * 300.00142 * 15 14 13 36 36 H 1.09000 * 109.46999 * 60.00757 * 15 14 13 37 37 H 0.96996 * 120.00283 * 179.97438 * 20 19 17 38 38 H 1.07998 * 120.08920 * 0.02788 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0458 1.2107 0.0000 4 6 1.2813 2.3777 0.0005 5 6 1.8887 3.6155 0.0000 6 6 3.2781 3.7131 -0.0016 7 6 3.9303 5.0381 -0.0027 8 6 3.7877 5.8918 1.0938 9 6 4.3950 7.1291 1.0850 10 6 5.1557 7.5266 -0.0039 11 17 5.9207 9.0848 0.0001 12 6 5.3077 6.6882 -1.0937 13 6 4.6999 5.4437 -1.1024 14 8 4.8489 4.6198 -2.1713 15 6 5.6467 5.1007 -3.2549 16 6 4.0627 2.5302 -0.0082 17 6 5.4689 2.6101 -0.0161 18 1 5.9623 3.4845 0.3815 19 6 6.2271 1.5558 -0.5397 20 7 5.6545 0.6449 -1.2838 21 14 8.0562 1.4500 -0.1758 22 1 8.4569 2.5931 0.6832 23 1 8.3478 0.1758 0.5290 24 1 8.8178 1.4966 -1.4497 25 6 3.4230 1.2773 -0.0005 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5138 -0.8899 29 1 0.2034 2.3109 0.0005 30 1 1.2858 4.5115 0.0000 31 1 3.1998 5.5840 1.9459 32 1 4.2814 7.7898 1.9318 33 1 5.9013 7.0045 -1.9387 34 1 5.6834 4.3470 -4.0416 35 1 5.2083 6.0170 -3.6502 36 1 6.6568 5.3050 -2.8997 37 1 6.1797 -0.0852 -1.6468 38 1 4.0089 0.3701 -0.0014 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241902948.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:06:15 Heat of formation + Delta-G solvation = -38.790617 kcal Electronic energy + Delta-G solvation = -24209.791150 eV Core-core repulsion = 20622.513656 eV Total energy + Delta-G solvation = -3587.277494 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.081 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -39.68878 -38.59553 -37.09573 -36.47879 -35.67898 -33.57172 -31.19526 -29.89762 -29.60276 -28.17521 -26.87560 -26.04474 -25.16222 -22.38887 -21.71861 -20.89527 -19.83168 -17.75947 -17.58439 -16.13927 -15.90095 -15.54918 -15.25527 -15.00463 -14.79933 -14.68902 -14.55688 -13.68813 -13.35814 -13.14883 -13.00904 -12.71836 -12.44085 -12.11239 -11.81940 -11.56722 -11.39061 -11.33152 -11.21154 -11.11264 -11.05824 -10.66921 -10.65562 -10.40545 -10.33136 -9.91933 -9.78373 -9.55105 -9.16926 -8.34987 -7.58882 -7.46541 -6.90950 -6.62832 -4.40305 1.59221 1.87734 2.41928 2.73830 2.95782 3.05283 3.10817 3.19482 3.89336 3.90389 4.17311 4.33460 4.60080 5.20251 5.35720 5.42231 5.53111 5.57900 5.64209 5.69094 5.75622 5.86508 5.88821 5.91895 6.06244 6.10829 6.24652 6.36084 6.58726 6.75568 6.82699 6.90722 7.04372 7.17721 7.27499 7.42747 7.71131 7.77753 7.95085 8.03009 8.09320 8.37658 8.75534 8.84491 8.92965 10.13503 Molecular weight = 318.08amu Principal moments of inertia in cm(-1) A = 0.011412 B = 0.005399 C = 0.004164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2452.879867 B = 5184.953188 C = 6722.087947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.330 6.330 3 C 0.133 3.867 4 C -0.320 4.320 5 C -0.039 4.039 6 C -0.201 4.201 7 C 0.001 3.999 8 C -0.080 4.080 9 C -0.152 4.152 10 C -0.015 4.015 11 Cl -0.092 7.092 12 C -0.213 4.213 13 C 0.157 3.843 14 O -0.270 6.270 15 C 0.026 3.974 16 C 0.164 3.836 17 C -0.430 4.430 18 H 0.078 0.922 19 C 0.079 3.921 20 N -0.776 5.776 21 Si 0.899 3.101 22 H -0.259 1.259 23 H -0.270 1.270 24 H -0.274 1.274 25 C -0.195 4.195 26 H 0.082 0.918 27 H 0.044 0.956 28 H 0.044 0.956 29 H 0.095 0.905 30 H 0.091 0.909 31 H 0.132 0.868 32 H 0.124 0.876 33 H 0.129 0.871 34 H 0.095 0.905 35 H 0.046 0.954 36 H 0.050 0.950 37 H 0.281 0.719 38 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.403 7.199 -0.254 7.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.244 6.244 3 C 0.089 3.911 4 C -0.340 4.340 5 C -0.057 4.057 6 C -0.203 4.203 7 C 0.000 4.000 8 C -0.099 4.099 9 C -0.171 4.171 10 C -0.041 4.041 11 Cl -0.064 7.064 12 C -0.232 4.232 13 C 0.110 3.890 14 O -0.181 6.181 15 C -0.070 4.070 16 C 0.161 3.839 17 C -0.458 4.458 18 H 0.096 0.904 19 C -0.140 4.140 20 N -0.401 5.401 21 Si 0.724 3.276 22 H -0.182 1.182 23 H -0.195 1.195 24 H -0.199 1.199 25 C -0.215 4.215 26 H 0.100 0.900 27 H 0.063 0.937 28 H 0.063 0.937 29 H 0.113 0.887 30 H 0.109 0.891 31 H 0.150 0.850 32 H 0.142 0.858 33 H 0.147 0.853 34 H 0.114 0.886 35 H 0.064 0.936 36 H 0.068 0.932 37 H 0.092 0.908 38 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -1.261 6.733 -0.452 6.865 hybrid contribution 0.854 0.434 -0.163 0.972 sum -0.407 7.167 -0.614 7.205 Atomic orbital electron populations 1.22746 0.80858 1.01780 1.00488 1.86006 1.19438 1.29199 1.89791 1.19002 0.92473 0.82411 0.97197 1.20299 0.97218 0.92463 1.23973 1.20271 0.93076 0.95217 0.97172 1.18244 0.91897 0.90368 1.19775 1.18262 0.96425 0.94627 0.90662 1.21101 0.99058 0.92343 0.97384 1.20714 1.00821 0.97707 0.97829 1.20474 1.00024 0.86932 0.96718 1.98318 1.80962 1.28423 1.98682 1.20898 1.07177 0.95002 1.00136 1.19112 0.94023 0.87569 0.88253 1.86412 1.66294 1.40668 1.24727 1.23003 0.94528 1.00243 0.89214 1.17134 0.92609 0.88688 0.85515 1.19411 0.90983 1.02053 1.33391 0.90391 1.25914 1.00954 0.94448 0.92733 1.69839 1.38234 1.10241 1.21745 0.86385 0.82344 0.79575 0.79318 1.18243 1.19545 1.19914 1.20556 0.89326 0.99202 1.12380 0.90001 0.93738 0.93693 0.88702 0.89064 0.84972 0.85773 0.85295 0.88613 0.93595 0.93177 0.90809 0.85413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.60 9.80 101.05 0.99 1.59 16 2 O -0.33 -7.24 10.48 -19.36 -0.20 -7.44 16 3 C 0.13 3.20 6.67 -39.24 -0.26 2.93 16 4 C -0.32 -7.06 9.02 -39.24 -0.35 -7.42 16 5 C -0.04 -0.86 9.71 -39.33 -0.38 -1.24 16 6 C -0.20 -4.69 4.99 -104.23 -0.52 -5.21 16 7 C 0.00 0.02 4.39 -104.75 -0.46 -0.44 16 8 C -0.08 -1.43 9.74 -39.19 -0.38 -1.81 16 9 C -0.15 -2.42 9.81 -39.58 -0.39 -2.81 16 10 C -0.01 -0.24 6.32 -39.39 -0.25 -0.49 16 11 Cl -0.09 -1.30 28.94 -51.86 -1.50 -2.80 16 12 C -0.21 -3.65 8.81 -39.45 -0.35 -4.00 16 13 C 0.16 3.14 5.95 -38.74 -0.23 2.91 16 14 O -0.27 -5.61 9.02 -19.05 -0.17 -5.79 16 15 C 0.03 0.40 9.81 101.05 0.99 1.39 16 16 C 0.16 4.20 5.40 -106.57 -0.58 3.62 16 17 C -0.43 -10.89 7.33 -37.93 -0.28 -11.17 16 18 H 0.08 1.98 7.06 -52.49 -0.37 1.61 16 19 C 0.08 1.92 5.18 -17.32 -0.09 1.84 16 20 N -0.78 -19.57 10.87 55.55 0.60 -18.97 16 21 Si 0.90 18.39 29.59 -169.99 -5.03 13.36 16 22 H -0.26 -5.31 7.11 56.52 0.40 -4.91 16 23 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 24 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 25 C -0.19 -5.09 8.60 -38.79 -0.33 -5.42 16 26 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 27 H 0.04 0.66 7.64 -51.93 -0.40 0.27 16 28 H 0.04 0.69 7.65 -51.93 -0.40 0.29 16 29 H 0.09 1.84 6.25 -52.49 -0.33 1.52 16 30 H 0.09 1.77 8.06 -52.49 -0.42 1.35 16 31 H 0.13 2.14 8.06 -52.48 -0.42 1.72 16 32 H 0.12 1.67 8.06 -52.49 -0.42 1.25 16 33 H 0.13 1.94 6.30 -52.49 -0.33 1.61 16 34 H 0.10 1.35 8.14 -51.92 -0.42 0.93 16 35 H 0.05 0.60 7.66 -51.93 -0.40 0.20 16 36 H 0.05 0.72 7.66 -51.93 -0.40 0.32 16 37 H 0.28 6.45 8.30 -40.82 -0.34 6.11 16 38 H 0.13 3.51 6.14 -52.49 -0.32 3.19 16 LS Contribution 336.88 15.07 5.08 5.08 Total: -1.00 -28.04 336.88 -8.28 -36.33 By element: Atomic # 1 Polarization: 10.16 SS G_CDS: -4.19 Total: 5.97 kcal Atomic # 6 Polarization: -22.86 SS G_CDS: -2.87 Total: -25.73 kcal Atomic # 7 Polarization: -19.57 SS G_CDS: 0.60 Total: -18.97 kcal Atomic # 8 Polarization: -12.86 SS G_CDS: -0.37 Total: -13.23 kcal Atomic # 14 Polarization: 18.39 SS G_CDS: -5.03 Total: 13.36 kcal Atomic # 17 Polarization: -1.30 SS G_CDS: -1.50 Total: -2.80 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -28.04 -8.28 -36.33 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241902948.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.464 kcal (2) G-P(sol) polarization free energy of solvation -28.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.327 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds