Wall clock time and date at job start Tue Mar 31 2020 12:06:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35878 * 116.99706 * 2 1 4 4 C 1.39513 * 119.77517 * 0.02562 * 3 2 1 5 5 C 1.37881 * 120.63489 * 180.02562 * 4 3 2 6 6 C 1.39274 * 120.15227 * 0.02562 * 5 4 3 7 7 C 1.47687 * 120.22325 * 179.97438 * 6 5 4 8 8 C 1.39693 * 120.17380 * 65.23363 * 7 6 5 9 9 C 1.37828 * 119.91142 * 180.22284 * 8 7 6 10 10 C 1.38652 * 120.26821 * 359.51749 * 9 8 7 11 11 Cl 1.73595 * 119.82183 * 180.25072 * 10 9 8 12 12 C 1.38334 * 120.35066 * 0.27517 * 10 9 8 13 13 C 1.38499 * 120.08231 * 359.95799 * 12 10 9 14 14 O 1.35781 * 120.13457 * 180.02562 * 13 12 10 15 15 C 1.42901 * 116.99978 * 359.97438 * 14 13 12 16 16 C 1.41949 * 119.54349 * 0.25355 * 6 5 4 17 17 C 1.40844 * 120.30776 * 179.70571 * 16 6 5 18 18 H 1.07997 * 120.00008 * 25.25092 * 17 16 6 19 19 C 1.40018 * 120.00108 * 205.25854 * 17 16 6 20 20 N 1.30808 * 119.99967 * 15.33540 * 19 17 16 21 21 Si 1.86797 * 120.00063 * 195.33586 * 19 17 16 22 22 H 1.48501 * 109.47154 * 0.02562 * 21 19 17 23 23 H 1.48504 * 109.47142 * 119.99871 * 21 19 17 24 24 H 1.48498 * 109.47101 * 239.99982 * 21 19 17 25 25 C 1.37876 * 119.76644 * 180.02562 * 3 2 1 26 26 H 1.09000 * 109.47007 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47120 * 299.99569 * 1 2 3 28 28 H 1.08993 * 109.47477 * 59.99828 * 1 2 3 29 29 H 1.08002 * 119.67793 * 359.97183 * 4 3 2 30 30 H 1.07993 * 119.92162 * 179.97438 * 5 4 3 31 31 H 1.08003 * 120.04610 * 0.02562 * 8 7 6 32 32 H 1.08001 * 119.86132 * 179.78692 * 9 8 7 33 33 H 1.08001 * 119.95727 * 179.97438 * 12 10 9 34 34 H 1.09008 * 109.46969 * 180.02562 * 15 14 13 35 35 H 1.08999 * 109.47259 * 300.00142 * 15 14 13 36 36 H 1.09000 * 109.46999 * 60.00757 * 15 14 13 37 37 H 0.96996 * 120.00283 * 179.97438 * 20 19 17 38 38 H 1.07998 * 120.08920 * 0.02788 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0458 1.2107 0.0000 4 6 1.2813 2.3777 0.0005 5 6 1.8887 3.6155 0.0000 6 6 3.2781 3.7131 -0.0016 7 6 3.9303 5.0381 -0.0027 8 6 3.7877 5.8918 1.0938 9 6 4.3950 7.1291 1.0850 10 6 5.1557 7.5266 -0.0039 11 17 5.9207 9.0848 0.0001 12 6 5.3077 6.6882 -1.0937 13 6 4.6999 5.4437 -1.1024 14 8 4.8489 4.6198 -2.1713 15 6 5.6467 5.1007 -3.2549 16 6 4.0627 2.5302 -0.0082 17 6 5.4689 2.6101 -0.0161 18 1 5.9623 3.4845 0.3815 19 6 6.2271 1.5558 -0.5397 20 7 5.6545 0.6449 -1.2838 21 14 8.0562 1.4500 -0.1758 22 1 8.4569 2.5931 0.6832 23 1 8.3478 0.1758 0.5290 24 1 8.8178 1.4966 -1.4497 25 6 3.4230 1.2773 -0.0005 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5138 -0.8899 29 1 0.2034 2.3109 0.0005 30 1 1.2858 4.5115 0.0000 31 1 3.1998 5.5840 1.9459 32 1 4.2814 7.7898 1.9318 33 1 5.9013 7.0045 -1.9387 34 1 5.6834 4.3470 -4.0416 35 1 5.2083 6.0170 -3.6502 36 1 6.6568 5.3050 -2.8997 37 1 6.1797 -0.0852 -1.6468 38 1 4.0089 0.3701 -0.0014 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241902948.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:06:14 Heat of formation + Delta-G solvation = -52.604232 kcal Electronic energy + Delta-G solvation = -24210.390154 eV Core-core repulsion = 20622.513656 eV Total energy + Delta-G solvation = -3587.876497 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.081 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.12549 -40.25188 -38.47617 -38.02879 -37.03369 -35.36226 -32.70745 -31.56246 -31.09119 -29.71422 -28.19029 -27.49098 -26.92977 -23.90231 -23.12581 -22.60990 -21.44895 -19.47974 -18.99042 -17.92446 -17.32134 -16.96645 -16.84795 -16.48235 -16.31563 -16.25685 -15.93822 -15.13064 -14.84055 -14.65961 -14.51231 -14.23425 -13.98245 -13.52187 -13.45552 -13.07618 -12.81979 -12.76534 -12.73623 -12.61395 -12.49978 -12.27689 -11.96014 -11.86158 -11.68927 -11.49435 -11.44819 -11.26853 -10.95791 -9.70457 -9.31640 -9.02964 -8.69099 -8.36288 -6.27656 0.19862 0.52623 1.00557 1.15804 1.18024 1.36268 1.49377 1.51104 2.19775 2.58789 2.73300 2.80380 2.84297 3.71832 3.95960 4.06127 4.23675 4.27377 4.37023 4.41436 4.48693 4.50024 4.54187 4.61132 4.70089 4.76254 4.76853 4.84790 5.12653 5.18754 5.23554 5.31256 5.39997 5.56854 5.61361 5.78532 5.98073 6.01133 6.15932 6.23581 6.52607 6.70415 6.96985 7.00568 7.12322 8.36328 Molecular weight = 318.08amu Principal moments of inertia in cm(-1) A = 0.011412 B = 0.005399 C = 0.004164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2452.879867 B = 5184.953188 C = 6722.087947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.353 6.353 3 C 0.127 3.873 4 C -0.318 4.318 5 C -0.047 4.047 6 C -0.200 4.200 7 C -0.037 4.037 8 C -0.078 4.078 9 C -0.145 4.145 10 C -0.014 4.014 11 Cl -0.067 7.067 12 C -0.211 4.211 13 C 0.142 3.858 14 O -0.309 6.309 15 C 0.019 3.981 16 C 0.139 3.861 17 C -0.448 4.448 18 H 0.069 0.931 19 C 0.042 3.958 20 N -0.812 5.812 21 Si 0.963 3.037 22 H -0.259 1.259 23 H -0.266 1.266 24 H -0.264 1.264 25 C -0.231 4.231 26 H 0.114 0.886 27 H 0.058 0.942 28 H 0.052 0.948 29 H 0.124 0.876 30 H 0.119 0.881 31 H 0.144 0.856 32 H 0.155 0.845 33 H 0.148 0.852 34 H 0.100 0.900 35 H 0.070 0.930 36 H 0.058 0.942 37 H 0.285 0.715 38 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.587 9.355 0.129 9.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.268 6.268 3 C 0.082 3.918 4 C -0.337 4.337 5 C -0.065 4.065 6 C -0.202 4.202 7 C -0.037 4.037 8 C -0.096 4.096 9 C -0.164 4.164 10 C -0.040 4.040 11 Cl -0.038 7.038 12 C -0.230 4.230 13 C 0.095 3.905 14 O -0.221 6.221 15 C -0.076 4.076 16 C 0.136 3.864 17 C -0.477 4.477 18 H 0.087 0.913 19 C -0.174 4.174 20 N -0.437 5.437 21 Si 0.785 3.215 22 H -0.183 1.183 23 H -0.191 1.191 24 H -0.189 1.189 25 C -0.252 4.252 26 H 0.133 0.867 27 H 0.076 0.924 28 H 0.071 0.929 29 H 0.142 0.858 30 H 0.137 0.863 31 H 0.162 0.838 32 H 0.172 0.828 33 H 0.166 0.834 34 H 0.119 0.881 35 H 0.089 0.911 36 H 0.077 0.923 37 H 0.096 0.904 38 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -1.462 8.897 -0.072 9.016 hybrid contribution 0.785 -0.122 -0.288 0.845 sum -0.677 8.775 -0.361 8.808 Atomic orbital electron populations 1.23123 0.77727 1.04406 1.01445 1.85966 1.22705 1.28522 1.89581 1.19113 0.92197 0.83824 0.96625 1.20619 0.98618 0.91795 1.22691 1.20643 0.93056 0.96270 0.96501 1.18558 0.92552 0.91093 1.17957 1.18374 0.98483 0.94334 0.92548 1.21244 0.99006 0.92567 0.96772 1.20996 0.99616 0.97220 0.98562 1.20653 0.99337 0.87764 0.96273 1.98331 1.80404 1.26460 1.98610 1.21063 1.06762 0.94059 1.01127 1.19235 0.94604 0.88495 0.88126 1.86343 1.67449 1.42348 1.26003 1.23235 0.94657 1.01477 0.88211 1.17450 0.93343 0.89470 0.86137 1.19411 0.91290 1.02385 1.34572 0.91295 1.26629 1.04873 0.93819 0.92117 1.69914 1.39868 1.11047 1.22899 0.85437 0.77354 0.79419 0.79340 1.18298 1.19053 1.18869 1.20502 0.90540 0.98687 1.15444 0.86738 0.92385 0.92929 0.85770 0.86338 0.83825 0.82774 0.83405 0.88145 0.91136 0.92302 0.90390 0.88064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.84 9.80 113.37 1.11 1.95 16 2 O -0.35 -15.66 10.48 -92.18 -0.97 -16.63 16 3 C 0.13 6.23 6.67 22.49 0.15 6.38 16 4 C -0.32 -13.87 9.02 22.49 0.20 -13.67 16 5 C -0.05 -2.02 9.71 22.43 0.22 -1.81 16 6 C -0.20 -9.50 4.99 -19.61 -0.10 -9.60 16 7 C -0.04 -1.52 4.39 -19.95 -0.09 -1.60 16 8 C -0.08 -2.65 9.74 22.52 0.22 -2.43 16 9 C -0.15 -4.24 9.81 22.27 0.22 -4.02 16 10 C -0.01 -0.41 6.32 22.39 0.14 -0.26 16 11 Cl -0.07 -1.66 28.94 -2.72 -0.08 -1.73 16 12 C -0.21 -6.88 8.81 22.35 0.20 -6.68 16 13 C 0.14 5.64 5.95 22.81 0.14 5.77 16 14 O -0.31 -13.08 9.02 -91.10 -0.82 -13.90 16 15 C 0.02 0.57 9.81 113.37 1.11 1.69 16 16 C 0.14 7.44 5.40 -21.13 -0.11 7.33 16 17 C -0.45 -23.69 7.33 23.34 0.17 -23.52 16 18 H 0.07 3.64 7.06 -2.91 -0.02 3.62 16 19 C 0.04 2.11 5.18 85.28 0.44 2.55 16 20 N -0.81 -43.04 10.87 21.84 0.24 -42.81 16 21 Si 0.96 38.69 29.59 68.60 2.03 40.72 16 22 H -0.26 -10.30 7.11 99.48 0.71 -9.59 16 23 H -0.27 -10.36 7.11 99.48 0.71 -9.65 16 24 H -0.26 -10.07 7.11 99.48 0.71 -9.37 16 25 C -0.23 -12.75 8.60 22.78 0.20 -12.55 16 26 H 0.11 2.71 8.14 -2.39 -0.02 2.69 16 27 H 0.06 1.61 7.64 -2.38 -0.02 1.59 16 28 H 0.05 1.52 7.65 -2.39 -0.02 1.50 16 29 H 0.12 4.57 6.25 -2.91 -0.02 4.55 16 30 H 0.12 4.41 8.06 -2.91 -0.02 4.38 16 31 H 0.14 4.44 8.06 -2.91 -0.02 4.41 16 32 H 0.15 3.54 8.06 -2.91 -0.02 3.51 16 33 H 0.15 4.12 6.30 -2.91 -0.02 4.10 16 34 H 0.10 2.85 8.14 -2.38 -0.02 2.83 16 35 H 0.07 1.74 7.66 -2.39 -0.02 1.72 16 36 H 0.06 1.64 7.66 -2.39 -0.02 1.62 16 37 H 0.29 13.76 8.30 -92.71 -0.77 12.99 16 38 H 0.10 5.99 6.14 -2.91 -0.02 5.97 16 Total: -1.00 -63.65 336.88 5.71 -57.94 By element: Atomic # 1 Polarization: 25.80 SS G_CDS: 1.09 Total: 26.90 kcal Atomic # 6 Polarization: -54.70 SS G_CDS: 4.22 Total: -50.49 kcal Atomic # 7 Polarization: -43.04 SS G_CDS: 0.24 Total: -42.81 kcal Atomic # 8 Polarization: -28.73 SS G_CDS: -1.79 Total: -30.52 kcal Atomic # 14 Polarization: 38.69 SS G_CDS: 2.03 Total: 40.72 kcal Atomic # 17 Polarization: -1.66 SS G_CDS: -0.08 Total: -1.73 kcal Total: -63.65 5.71 -57.94 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241902948.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.335 kcal (2) G-P(sol) polarization free energy of solvation -63.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.939 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds