Wall clock time and date at job start Tue Mar 31 2020 12:14:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45193 * 1 3 3 C 1.34684 * 117.00247 * 2 1 4 4 O 1.21418 * 119.99494 * 0.02562 * 3 2 1 5 5 C 1.48201 * 120.00484 * 179.97438 * 3 2 1 6 6 N 1.32614 * 119.03619 * 180.02562 * 5 3 2 7 7 C 1.31859 * 120.90232 * 180.02562 * 6 5 3 8 8 C 1.40091 * 119.00309 * 359.97438 * 7 6 5 9 9 C 1.48046 * 120.87147 * 179.97438 * 8 7 6 10 10 C 1.39443 * 120.14639 * 310.01969 * 9 8 7 11 11 C 1.37894 * 119.96075 * 179.97438 * 10 9 8 12 12 C 1.38742 * 120.26248 * 0.02562 * 11 10 9 13 13 F 1.35102 * 119.85054 * 179.97438 * 12 11 10 14 14 C 1.38331 * 120.29790 * 359.74769 * 12 11 10 15 15 C 1.38712 * 120.03292 * 0.50388 * 14 12 11 16 16 O 1.35625 * 120.13108 * 179.76639 * 15 14 12 17 17 C 1.34801 * 116.99787 * 5.60771 * 16 15 14 18 18 H 1.08003 * 120.00188 * 354.92116 * 17 16 15 19 19 C 1.38672 * 119.99880 * 174.93074 * 17 16 15 20 20 N 1.31535 * 120.00055 * 180.27099 * 19 17 16 21 21 Si 1.86803 * 119.99876 * 359.97438 * 19 17 16 22 22 H 1.48507 * 109.46893 * 90.00633 * 21 19 17 23 23 H 1.48501 * 109.47060 * 210.00225 * 21 19 17 24 24 H 1.48492 * 109.47352 * 330.00481 * 21 19 17 25 25 C 1.40094 * 118.25660 * 0.25062 * 8 7 6 26 26 N 1.31857 * 119.00765 * 359.49049 * 25 8 7 27 27 H 1.09006 * 109.46858 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47259 * 299.99420 * 1 2 3 29 29 H 1.08997 * 109.47409 * 60.00022 * 1 2 3 30 30 H 1.07996 * 120.50111 * 180.02562 * 7 6 5 31 31 H 1.07996 * 120.01772 * 359.96342 * 10 9 8 32 32 H 1.08003 * 119.86749 * 180.02562 * 11 10 9 33 33 H 1.08004 * 119.98586 * 180.27904 * 14 12 11 34 34 H 0.97005 * 120.00193 * 179.72258 * 20 19 17 35 35 H 1.08008 * 120.49584 * 179.74629 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0634 1.2000 0.0000 4 8 1.4021 2.2183 0.0005 5 6 3.5434 1.2776 0.0006 6 7 4.1255 2.4692 0.0011 7 6 5.4393 2.5811 0.0011 8 6 6.2201 1.4180 0.0011 9 6 7.6985 1.4955 0.0006 10 6 8.3569 2.3062 -0.9233 11 6 9.7341 2.3759 -0.9201 12 6 10.4692 1.6416 -0.0007 13 9 11.8182 1.7157 -0.0053 14 6 9.8270 0.8374 0.9237 15 6 8.4424 0.7540 0.9280 16 8 7.8108 -0.0374 1.8304 17 6 8.5773 -0.6264 2.7700 18 1 9.6518 -0.5248 2.7319 19 6 7.9860 -1.3628 3.7854 20 7 8.7335 -1.9330 4.7053 21 14 6.1273 -1.5380 3.8515 22 1 5.7155 -2.7379 3.0796 23 1 5.6940 -1.6855 5.2642 24 1 5.4950 -0.3300 3.2634 25 6 5.5652 0.1796 -0.0043 26 7 4.2469 0.1534 0.0011 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5137 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 5.9065 3.5548 0.0019 31 1 7.7886 2.8791 -1.6411 32 1 10.2425 3.0047 -1.6361 33 1 10.4040 0.2714 1.6400 34 1 8.3196 -2.4448 5.4179 35 1 6.1316 -0.7400 -0.0086 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243010512.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:14:17 Heat of formation + Delta-G solvation = -70.850460 kcal Electronic energy + Delta-G solvation = -25492.740290 eV Core-core repulsion = 21372.195858 eV Total energy + Delta-G solvation = -4120.544432 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 318.085 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -48.56964 -41.25911 -40.10551 -39.35870 -36.88572 -36.53775 -33.79694 -33.23505 -32.68818 -29.98409 -29.37796 -27.84113 -25.79914 -25.12375 -24.47665 -22.28326 -21.90002 -21.21331 -18.64598 -18.44826 -18.05032 -17.70584 -16.74673 -16.59171 -16.36001 -15.75312 -15.54774 -15.27303 -15.12475 -14.67670 -14.30134 -14.08692 -13.77760 -13.69678 -13.49918 -13.46430 -13.20423 -12.78966 -12.53622 -12.26459 -12.08860 -11.58061 -11.20510 -11.07831 -10.99032 -10.91303 -10.86337 -10.67405 -10.47270 -9.85441 -9.71428 -9.28076 -9.17450 -8.36041 -7.73831 -6.73244 -4.41054 0.23018 1.14770 1.49270 1.76536 2.22883 2.31535 3.06028 3.10642 3.22780 3.76228 3.94353 3.97688 3.98801 4.26915 4.32134 4.52858 4.62883 4.77237 4.84049 4.95234 5.02104 5.03611 5.09990 5.26208 5.37003 5.43445 5.71432 5.91501 5.95329 6.07324 6.22266 6.30633 6.54163 6.57033 6.67582 6.91115 7.17928 7.41378 7.47775 7.66409 7.98516 8.58445 9.10992 10.32188 Molecular weight = 318.08amu Principal moments of inertia in cm(-1) A = 0.011422 B = 0.004913 C = 0.003561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2450.858637 B = 5698.032647 C = 7860.128666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.333 6.333 3 C 0.543 3.457 4 O -0.477 6.477 5 C 0.264 3.736 6 N -0.460 5.460 7 C 0.141 3.859 8 C -0.069 4.069 9 C -0.157 4.157 10 C -0.021 4.021 11 C -0.240 4.240 12 C 0.156 3.844 13 F -0.144 7.144 14 C -0.255 4.255 15 C 0.199 3.801 16 O -0.192 6.192 17 C -0.396 4.396 18 H 0.113 0.887 19 C 0.074 3.926 20 N -0.859 5.859 21 Si 0.898 3.102 22 H -0.265 1.265 23 H -0.278 1.278 24 H -0.260 1.260 25 C 0.157 3.843 26 N -0.463 5.463 27 H 0.106 0.894 28 H 0.065 0.935 29 H 0.064 0.936 30 H 0.180 0.820 31 H 0.130 0.870 32 H 0.127 0.873 33 H 0.151 0.849 34 H 0.286 0.714 35 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.934 4.631 -9.902 12.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.248 6.248 3 C 0.382 3.618 4 O -0.361 6.361 5 C -0.003 4.003 6 N -0.176 5.176 7 C -0.026 4.026 8 C -0.073 4.073 9 C -0.160 4.160 10 C -0.040 4.040 11 C -0.260 4.260 12 C 0.137 3.863 13 F -0.123 7.123 14 C -0.275 4.275 15 C 0.143 3.857 16 O -0.094 6.094 17 C -0.470 4.470 18 H 0.130 0.870 19 C -0.133 4.133 20 N -0.493 5.493 21 Si 0.723 3.277 22 H -0.189 1.189 23 H -0.203 1.203 24 H -0.184 1.184 25 C -0.010 4.010 26 N -0.178 5.178 27 H 0.124 0.876 28 H 0.083 0.917 29 H 0.083 0.917 30 H 0.197 0.803 31 H 0.148 0.852 32 H 0.145 0.855 33 H 0.168 0.832 34 H 0.096 0.904 35 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -8.455 4.636 -9.604 13.610 hybrid contribution 0.581 -0.139 0.376 0.706 sum -7.874 4.498 -9.228 12.938 Atomic orbital electron populations 1.23367 0.75736 1.04079 1.02665 1.86671 1.23307 1.31181 1.83598 1.19932 0.86406 0.81898 0.73529 1.90848 1.65332 1.36074 1.43840 1.21098 0.92484 0.85468 1.01215 1.67947 1.12530 1.26459 1.10642 1.23442 0.87323 0.99078 0.92779 1.20690 0.94998 0.95285 0.96347 1.17462 0.89183 1.06536 1.02861 1.20535 0.93194 0.94734 0.95516 1.20541 0.94065 1.07372 1.04003 1.17598 0.76229 0.96632 0.95849 1.91460 1.29972 1.94979 1.95886 1.21120 0.94778 1.07080 1.04495 1.18628 0.89616 0.88377 0.89104 1.83542 1.37209 1.52308 1.36341 1.20840 0.92339 1.30178 1.03636 0.86978 1.24483 1.00423 0.94741 0.93654 1.69613 1.36725 1.30501 1.12469 0.86288 0.82920 0.80351 0.78187 1.18943 1.20318 1.18393 1.23582 0.88725 0.98492 0.90165 1.68312 1.08698 1.30682 1.10138 0.87613 0.91659 0.91689 0.80271 0.85234 0.85476 0.83178 0.90395 0.80260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.34 10.56 101.05 1.07 1.41 16 2 O -0.33 -4.83 10.35 -40.45 -0.42 -5.25 16 3 C 0.54 9.02 7.98 34.82 0.28 9.30 16 4 O -0.48 -8.43 16.64 -19.20 -0.32 -8.75 16 5 C 0.26 4.64 7.58 -156.96 -1.19 3.45 16 6 N -0.46 -7.80 10.10 -10.88 -0.11 -7.91 16 7 C 0.14 2.07 10.85 -16.85 -0.18 1.89 16 8 C -0.07 -1.10 5.30 -104.48 -0.55 -1.65 16 9 C -0.16 -2.54 5.53 -104.72 -0.58 -3.12 16 10 C -0.02 -0.29 9.54 -39.26 -0.37 -0.66 16 11 C -0.24 -3.35 10.01 -39.52 -0.40 -3.75 16 12 C 0.16 2.60 7.30 -39.36 -0.29 2.31 16 13 F -0.14 -2.39 17.26 2.25 0.04 -2.36 16 14 C -0.25 -4.81 9.13 -39.37 -0.36 -5.17 16 15 C 0.20 3.85 6.58 -38.70 -0.25 3.59 16 16 O -0.19 -4.31 7.03 0.52 0.00 -4.31 16 17 C -0.40 -9.89 9.95 30.89 0.31 -9.58 16 18 H 0.11 2.87 5.44 -52.48 -0.29 2.59 16 19 C 0.07 1.89 5.49 -17.52 -0.10 1.80 16 20 N -0.86 -22.88 13.96 55.48 0.77 -22.11 16 21 Si 0.90 20.36 28.62 -169.99 -4.86 15.49 16 22 H -0.26 -5.87 7.11 56.52 0.40 -5.46 16 23 H -0.28 -6.18 7.11 56.52 0.40 -5.77 16 24 H -0.26 -6.06 7.11 56.52 0.40 -5.66 16 25 C 0.16 2.69 10.11 -16.85 -0.17 2.52 16 26 N -0.46 -8.26 10.14 -10.88 -0.11 -8.37 16 27 H 0.11 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 29 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.18 2.01 8.06 -52.49 -0.42 1.58 16 31 H 0.13 1.30 8.05 -52.49 -0.42 0.88 16 32 H 0.13 1.46 8.06 -52.48 -0.42 1.04 16 33 H 0.15 3.03 5.64 -52.48 -0.30 2.74 16 34 H 0.29 7.05 8.31 -40.82 -0.34 6.71 16 35 H 0.18 2.95 7.78 -52.48 -0.41 2.54 16 LS Contribution 327.10 15.07 4.93 4.93 Total: -1.00 -28.96 327.10 -5.53 -34.49 By element: Atomic # 1 Polarization: 4.46 SS G_CDS: -2.66 Total: 1.80 kcal Atomic # 6 Polarization: 5.14 SS G_CDS: -2.79 Total: 2.34 kcal Atomic # 7 Polarization: -38.94 SS G_CDS: 0.55 Total: -38.39 kcal Atomic # 8 Polarization: -17.58 SS G_CDS: -0.73 Total: -18.31 kcal Atomic # 9 Polarization: -2.39 SS G_CDS: 0.04 Total: -2.36 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -4.86 Total: 15.49 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -28.96 -5.53 -34.49 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243010512.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.361 kcal (2) G-P(sol) polarization free energy of solvation -28.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.490 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds