Wall clock time and date at job start Tue Mar 31 2020 12:08:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35532 * 117.00129 * 2 1 4 4 C 1.39173 * 120.41558 * 179.97438 * 3 2 1 5 5 C 1.39449 * 118.40155 * 179.97438 * 4 3 2 6 6 C 1.48170 * 120.47799 * 180.02562 * 5 4 3 7 7 C 1.39363 * 120.16760 * 0.02562 * 6 5 4 8 8 C 1.37975 * 119.94016 * 180.02562 * 7 6 5 9 9 C 1.38475 * 120.28336 * 0.02562 * 8 7 6 10 10 C 1.38082 * 120.33954 * 359.97438 * 9 8 7 11 11 C 1.38791 * 120.05033 * 0.02562 * 10 9 8 12 12 O 1.35624 * 120.13887 * 179.97438 * 11 10 9 13 13 C 1.34814 * 116.99679 * 353.61115 * 12 11 10 14 14 H 1.08005 * 120.00697 * 354.36587 * 13 12 11 15 15 C 1.38670 * 119.99753 * 174.37330 * 13 12 11 16 16 N 1.31547 * 119.99926 * 179.97438 * 15 13 12 17 17 Si 1.86804 * 120.00134 * 359.97438 * 15 13 12 18 18 H 1.48505 * 109.46758 * 90.00599 * 17 15 13 19 19 H 1.48502 * 109.47296 * 210.00211 * 17 15 13 20 20 H 1.48497 * 109.46923 * 330.00583 * 17 15 13 21 21 N 1.33327 * 119.04491 * 0.28243 * 5 4 3 22 22 C 1.32386 * 120.73535 * 359.43700 * 21 5 4 23 23 S 1.76208 * 119.12170 * 180.31251 * 22 21 5 24 24 C 1.81002 * 99.99870 * 180.25511 * 23 22 21 25 25 N 1.32579 * 121.75436 * 0.57541 * 22 21 5 26 26 H 1.08995 * 109.46798 * 300.00187 * 1 2 3 27 27 H 1.08998 * 109.47172 * 60.00086 * 1 2 3 28 28 H 1.09001 * 109.47274 * 179.97438 * 1 2 3 29 29 H 1.08002 * 120.79897 * 359.95761 * 4 3 2 30 30 H 1.07994 * 120.02760 * 359.97438 * 7 6 5 31 31 H 1.07999 * 119.85577 * 180.02562 * 8 7 6 32 32 H 1.08001 * 119.82980 * 179.72351 * 9 8 7 33 33 H 1.07993 * 119.96979 * 179.97438 * 10 9 8 34 34 H 0.97009 * 119.99815 * 179.97438 * 16 15 13 35 35 H 1.08998 * 109.47017 * 299.99819 * 24 23 22 36 36 H 1.09002 * 109.47383 * 60.00272 * 24 23 22 37 37 H 1.08997 * 109.46742 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0443 1.2076 0.0000 4 6 3.4336 1.2905 0.0005 5 6 4.0226 2.5544 0.0000 6 6 5.4975 2.6962 -0.0001 7 6 6.3099 1.5639 -0.0001 8 6 7.6828 1.7014 0.0004 9 6 8.2585 2.9608 0.0015 10 6 7.4646 4.0906 0.0015 11 6 6.0821 3.9685 0.0010 12 8 5.3006 5.0770 0.0015 13 6 5.9236 6.2649 0.1362 14 1 6.9859 6.2990 0.3284 15 6 5.2005 7.4432 0.0282 16 7 5.8083 8.6023 0.1601 17 14 3.3633 7.3844 -0.3047 18 1 2.6278 7.3427 0.9847 19 1 2.9592 8.5937 -1.0661 20 1 3.0425 6.1703 -1.0972 21 7 3.2396 3.6335 0.0047 22 6 1.9212 3.5128 -0.0013 23 16 0.9269 4.9676 -0.0032 24 6 -0.7220 4.2212 -0.0038 25 7 1.3292 2.3266 -0.0009 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 4.0408 0.3974 0.0016 30 1 5.8653 0.5797 0.0004 31 1 8.3111 0.8229 0.0000 32 1 9.3340 3.0599 0.0064 33 1 7.9199 5.0698 0.0027 34 1 5.3025 9.4266 0.0841 35 1 -0.8405 3.6026 -0.8934 36 1 -0.8419 3.6039 0.8866 37 1 -1.4767 5.0076 -0.0054 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243584850.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:08:41 Heat of formation + Delta-G solvation = 22.064636 kcal Electronic energy + Delta-G solvation = -24109.938745 eV Core-core repulsion = 20559.636590 eV Total energy + Delta-G solvation = -3550.302155 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.082 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.81234 -39.26097 -38.17356 -36.62884 -33.52076 -32.45863 -31.80287 -29.91999 -29.22159 -28.68490 -27.38549 -25.37595 -24.43417 -23.69819 -21.51589 -21.06173 -18.75844 -17.94549 -17.83882 -17.00007 -16.26104 -16.16692 -15.35894 -15.20350 -14.72833 -14.43671 -14.41718 -14.17236 -13.86994 -13.74971 -13.68816 -13.28390 -13.01870 -12.59251 -12.36149 -12.21193 -12.09995 -11.76617 -11.55998 -11.11184 -10.91337 -10.77932 -10.63568 -10.33593 -10.29353 -9.72544 -9.55460 -9.28027 -8.88957 -8.87996 -8.19378 -7.54639 -7.37415 -6.48412 -4.11166 0.84312 1.35557 1.46611 2.20060 2.28372 2.30117 2.99384 3.33296 3.39289 3.60315 3.96915 4.30877 4.35316 4.52256 4.74650 4.88972 5.02845 5.07102 5.14166 5.14631 5.20730 5.24791 5.30456 5.44749 5.53723 5.62788 5.70363 5.81602 5.89095 6.09000 6.31901 6.42498 6.61848 6.90499 7.01114 7.09802 7.18066 7.34350 7.49523 7.68817 7.93327 8.31107 8.85839 9.50361 10.55314 Molecular weight = 318.08amu Principal moments of inertia in cm(-1) A = 0.010440 B = 0.007083 C = 0.004240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2681.363994 B = 3952.118385 C = 6602.145730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.304 6.304 3 C 0.369 3.631 4 C -0.266 4.266 5 C 0.285 3.715 6 C -0.160 4.160 7 C -0.037 4.037 8 C -0.219 4.219 9 C -0.052 4.052 10 C -0.227 4.227 11 C 0.192 3.808 12 O -0.154 6.154 13 C -0.390 4.390 14 H 0.107 0.893 15 C 0.073 3.927 16 N -0.868 5.868 17 Si 0.879 3.121 18 H -0.259 1.259 19 H -0.287 1.287 20 H -0.220 1.220 21 N -0.487 5.487 22 C 0.339 3.661 23 S 0.009 5.991 24 C -0.157 4.157 25 N -0.602 5.602 26 H 0.058 0.942 27 H 0.058 0.942 28 H 0.095 0.905 29 H 0.149 0.851 30 H 0.120 0.880 31 H 0.113 0.887 32 H 0.114 0.886 33 H 0.138 0.862 34 H 0.282 0.718 35 H 0.084 0.916 36 H 0.084 0.916 37 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.763 -13.389 -0.598 16.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.209 6.209 3 C 0.182 3.818 4 C -0.292 4.292 5 C 0.142 3.858 6 C -0.163 4.163 7 C -0.056 4.056 8 C -0.238 4.238 9 C -0.071 4.071 10 C -0.246 4.246 11 C 0.134 3.866 12 O -0.052 6.052 13 C -0.466 4.466 14 H 0.124 0.876 15 C -0.132 4.132 16 N -0.503 5.503 17 Si 0.704 3.296 18 H -0.184 1.184 19 H -0.214 1.214 20 H -0.144 1.144 21 N -0.208 5.208 22 C -0.038 4.038 23 S 0.241 5.759 24 C -0.326 4.326 25 N -0.338 5.338 26 H 0.077 0.923 27 H 0.076 0.924 28 H 0.114 0.886 29 H 0.166 0.834 30 H 0.138 0.862 31 H 0.131 0.869 32 H 0.132 0.868 33 H 0.155 0.845 34 H 0.092 0.908 35 H 0.103 0.897 36 H 0.103 0.897 37 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -9.310 -11.339 -0.606 14.684 hybrid contribution -0.629 -1.795 -0.074 1.904 sum -9.939 -13.134 -0.680 16.485 Atomic orbital electron populations 1.22851 0.77414 1.02806 1.02436 1.86220 1.22791 1.24282 1.87591 1.19746 0.89288 0.84263 0.88539 1.21609 0.92181 1.00140 1.15251 1.19876 0.93405 0.86579 0.85939 1.17359 0.88093 0.91654 1.19160 1.20734 0.93281 0.96132 0.95490 1.20542 0.94105 0.96946 1.12187 1.20970 0.98922 0.92258 0.94939 1.21291 0.92975 0.99950 1.10374 1.19082 0.89488 0.86713 0.91335 1.83870 1.34037 1.12358 1.74964 1.20958 0.96178 0.80253 1.49174 0.87586 1.24497 1.00620 0.93309 0.94800 1.69653 1.37513 0.97499 1.45669 0.86406 0.82955 0.79264 0.80940 1.18364 1.21355 1.14364 1.68944 1.02519 1.31976 1.17316 1.24426 0.91879 0.93893 0.93576 1.86563 0.97065 1.01653 1.90570 1.23595 0.97658 1.04948 1.06422 1.68231 1.40838 0.98130 1.26574 0.92348 0.92358 0.88635 0.83368 0.86238 0.86865 0.86840 0.84485 0.90823 0.89651 0.89679 0.88162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.41 10.41 101.05 1.05 1.46 16 2 O -0.30 -4.25 10.49 -18.29 -0.19 -4.44 16 3 C 0.37 6.15 7.52 -16.79 -0.13 6.02 16 4 C -0.27 -4.53 9.48 -38.78 -0.37 -4.90 16 5 C 0.28 5.78 6.76 -82.69 -0.56 5.22 16 6 C -0.16 -3.24 5.89 -104.73 -0.62 -3.85 16 7 C -0.04 -0.61 9.43 -39.26 -0.37 -0.98 16 8 C -0.22 -3.43 10.03 -39.59 -0.40 -3.82 16 9 C -0.05 -0.88 10.03 -39.55 -0.40 -1.28 16 10 C -0.23 -4.71 9.12 -39.43 -0.36 -5.07 16 11 C 0.19 4.41 6.65 -38.71 -0.26 4.15 16 12 O -0.15 -4.01 6.47 0.49 0.00 -4.00 16 13 C -0.39 -10.79 9.89 30.89 0.31 -10.49 16 14 H 0.11 2.96 5.55 -52.48 -0.29 2.67 16 15 C 0.07 2.05 5.49 -17.51 -0.10 1.95 16 16 N -0.87 -24.78 13.96 55.48 0.77 -24.01 16 17 Si 0.88 21.59 26.30 -169.99 -4.47 17.12 16 18 H -0.26 -6.26 7.11 56.52 0.40 -5.86 16 19 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 20 H -0.22 -5.38 6.18 56.52 0.35 -5.03 16 21 N -0.49 -10.86 8.27 -10.06 -0.08 -10.95 16 22 C 0.34 6.73 7.85 -90.97 -0.71 6.02 16 23 S 0.01 0.15 19.52 -107.50 -2.10 -1.95 16 24 C -0.16 -1.92 9.61 101.05 0.97 -0.95 16 25 N -0.60 -10.49 8.05 -13.57 -0.11 -10.60 16 26 H 0.06 0.59 8.12 -51.93 -0.42 0.17 16 27 H 0.06 0.59 8.12 -51.93 -0.42 0.17 16 28 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.15 2.09 6.31 -52.49 -0.33 1.76 16 30 H 0.12 1.60 6.26 -52.49 -0.33 1.27 16 31 H 0.11 1.42 8.06 -52.49 -0.42 1.00 16 32 H 0.11 1.59 8.06 -52.49 -0.42 1.17 16 33 H 0.14 2.96 5.73 -52.49 -0.30 2.66 16 34 H 0.28 7.47 8.31 -40.82 -0.34 7.13 16 35 H 0.08 1.00 8.11 -51.92 -0.42 0.58 16 36 H 0.08 1.00 8.11 -51.92 -0.42 0.58 16 37 H 0.10 0.97 8.14 -51.92 -0.42 0.54 16 LS Contribution 328.66 15.07 4.95 4.95 Total: -1.00 -30.81 328.66 -6.97 -37.78 By element: Atomic # 1 Polarization: 6.42 SS G_CDS: -3.81 Total: 2.61 kcal Atomic # 6 Polarization: -4.58 SS G_CDS: -1.93 Total: -6.51 kcal Atomic # 7 Polarization: -46.14 SS G_CDS: 0.58 Total: -45.56 kcal Atomic # 8 Polarization: -8.25 SS G_CDS: -0.19 Total: -8.44 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -4.47 Total: 17.12 kcal Atomic # 16 Polarization: 0.15 SS G_CDS: -2.10 Total: -1.95 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -30.81 -6.97 -37.78 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243584850.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.844 kcal (2) G-P(sol) polarization free energy of solvation -30.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.779 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds