Wall clock time and date at job start Tue Mar 31 2020 12:08:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35532 * 117.00129 * 2 1 4 4 C 1.39173 * 120.41558 * 179.97438 * 3 2 1 5 5 C 1.39449 * 118.40155 * 179.97438 * 4 3 2 6 6 C 1.48170 * 120.47799 * 180.02562 * 5 4 3 7 7 C 1.39363 * 120.16760 * 0.02562 * 6 5 4 8 8 C 1.37975 * 119.94016 * 180.02562 * 7 6 5 9 9 C 1.38475 * 120.28336 * 0.02562 * 8 7 6 10 10 C 1.38082 * 120.33954 * 359.97438 * 9 8 7 11 11 C 1.38791 * 120.05033 * 0.02562 * 10 9 8 12 12 O 1.35624 * 120.13887 * 179.97438 * 11 10 9 13 13 C 1.34814 * 116.99679 * 353.61115 * 12 11 10 14 14 H 1.08005 * 120.00697 * 354.36587 * 13 12 11 15 15 C 1.38670 * 119.99753 * 174.37330 * 13 12 11 16 16 N 1.31547 * 119.99926 * 179.97438 * 15 13 12 17 17 Si 1.86804 * 120.00134 * 359.97438 * 15 13 12 18 18 H 1.48505 * 109.46758 * 90.00599 * 17 15 13 19 19 H 1.48502 * 109.47296 * 210.00211 * 17 15 13 20 20 H 1.48497 * 109.46923 * 330.00583 * 17 15 13 21 21 N 1.33327 * 119.04491 * 0.28243 * 5 4 3 22 22 C 1.32386 * 120.73535 * 359.43700 * 21 5 4 23 23 S 1.76208 * 119.12170 * 180.31251 * 22 21 5 24 24 C 1.81002 * 99.99870 * 180.25511 * 23 22 21 25 25 N 1.32579 * 121.75436 * 0.57541 * 22 21 5 26 26 H 1.08995 * 109.46798 * 300.00187 * 1 2 3 27 27 H 1.08998 * 109.47172 * 60.00086 * 1 2 3 28 28 H 1.09001 * 109.47274 * 179.97438 * 1 2 3 29 29 H 1.08002 * 120.79897 * 359.95761 * 4 3 2 30 30 H 1.07994 * 120.02760 * 359.97438 * 7 6 5 31 31 H 1.07999 * 119.85577 * 180.02562 * 8 7 6 32 32 H 1.08001 * 119.82980 * 179.72351 * 9 8 7 33 33 H 1.07993 * 119.96979 * 179.97438 * 10 9 8 34 34 H 0.97009 * 119.99815 * 179.97438 * 16 15 13 35 35 H 1.08998 * 109.47017 * 299.99819 * 24 23 22 36 36 H 1.09002 * 109.47383 * 60.00272 * 24 23 22 37 37 H 1.08997 * 109.46742 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0443 1.2076 0.0000 4 6 3.4336 1.2905 0.0005 5 6 4.0226 2.5544 0.0000 6 6 5.4975 2.6962 -0.0001 7 6 6.3099 1.5639 -0.0001 8 6 7.6828 1.7014 0.0004 9 6 8.2585 2.9608 0.0015 10 6 7.4646 4.0906 0.0015 11 6 6.0821 3.9685 0.0010 12 8 5.3006 5.0770 0.0015 13 6 5.9236 6.2649 0.1362 14 1 6.9859 6.2990 0.3284 15 6 5.2005 7.4432 0.0282 16 7 5.8083 8.6023 0.1601 17 14 3.3633 7.3844 -0.3047 18 1 2.6278 7.3427 0.9847 19 1 2.9592 8.5937 -1.0661 20 1 3.0425 6.1703 -1.0972 21 7 3.2396 3.6335 0.0047 22 6 1.9212 3.5128 -0.0013 23 16 0.9269 4.9676 -0.0032 24 6 -0.7220 4.2212 -0.0038 25 7 1.3292 2.3266 -0.0009 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 4.0408 0.3974 0.0016 30 1 5.8653 0.5797 0.0004 31 1 8.3111 0.8229 0.0000 32 1 9.3340 3.0599 0.0064 33 1 7.9199 5.0698 0.0027 34 1 5.3025 9.4266 0.0841 35 1 -0.8405 3.6026 -0.8934 36 1 -0.8419 3.6039 0.8866 37 1 -1.4767 5.0076 -0.0054 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243584850.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:08:40 Heat of formation + Delta-G solvation = 1.196055 kcal Electronic energy + Delta-G solvation = -24110.843674 eV Core-core repulsion = 20559.636590 eV Total energy + Delta-G solvation = -3551.207084 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.082 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.18326 -40.81643 -39.41327 -38.22347 -34.94606 -34.42934 -33.18594 -31.29034 -30.75182 -29.75578 -28.38240 -27.23331 -25.84905 -25.07441 -23.04696 -22.53050 -20.13844 -19.73969 -19.25516 -18.56881 -17.62301 -17.31193 -16.81817 -16.56517 -16.36625 -15.86562 -15.70925 -15.52077 -15.39635 -15.31606 -15.15384 -14.41324 -14.35236 -14.27845 -14.02389 -13.53514 -13.26813 -12.95998 -12.77079 -12.66192 -12.44597 -12.38258 -12.14300 -11.85868 -11.73176 -11.37876 -11.20901 -10.90170 -10.53258 -10.34260 -9.65084 -9.05257 -8.86471 -8.50257 -6.19096 -0.58256 -0.03110 0.12224 0.68444 0.84108 1.12403 1.36215 1.46026 1.67019 1.86962 2.39166 2.53753 2.84067 2.96022 3.09976 3.20127 3.51082 3.72964 3.96523 4.14725 4.25962 4.28658 4.33174 4.37769 4.38931 4.42226 4.51876 4.64597 4.69408 4.86217 4.86727 4.95712 5.18158 5.37058 5.57381 5.63340 5.71113 5.80865 5.88840 6.07524 6.20280 6.85225 6.89725 7.64796 8.57705 Molecular weight = 318.08amu Principal moments of inertia in cm(-1) A = 0.010440 B = 0.007083 C = 0.004240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2681.363994 B = 3952.118385 C = 6602.145730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.300 6.300 3 C 0.367 3.633 4 C -0.251 4.251 5 C 0.257 3.743 6 C -0.163 4.163 7 C -0.033 4.033 8 C -0.189 4.189 9 C -0.046 4.046 10 C -0.253 4.253 11 C 0.157 3.843 12 O -0.188 6.188 13 C -0.395 4.395 14 H 0.084 0.916 15 C 0.023 3.977 16 N -0.918 5.918 17 Si 0.934 3.066 18 H -0.261 1.261 19 H -0.283 1.283 20 H -0.224 1.224 21 N -0.530 5.530 22 C 0.328 3.672 23 S -0.052 6.052 24 C -0.132 4.132 25 N -0.587 5.587 26 H 0.058 0.942 27 H 0.058 0.942 28 H 0.133 0.867 29 H 0.184 0.816 30 H 0.164 0.836 31 H 0.165 0.835 32 H 0.148 0.852 33 H 0.113 0.887 34 H 0.282 0.718 35 H 0.092 0.908 36 H 0.092 0.908 37 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.936 -18.661 -0.776 21.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.204 6.204 3 C 0.179 3.821 4 C -0.276 4.276 5 C 0.115 3.885 6 C -0.165 4.165 7 C -0.052 4.052 8 C -0.207 4.207 9 C -0.064 4.064 10 C -0.272 4.272 11 C 0.104 3.896 12 O -0.091 6.091 13 C -0.472 4.472 14 H 0.101 0.899 15 C -0.176 4.176 16 N -0.558 5.558 17 Si 0.758 3.242 18 H -0.186 1.186 19 H -0.209 1.209 20 H -0.148 1.148 21 N -0.251 5.251 22 C -0.049 4.049 23 S 0.181 5.819 24 C -0.300 4.300 25 N -0.324 5.324 26 H 0.077 0.923 27 H 0.077 0.923 28 H 0.151 0.849 29 H 0.201 0.799 30 H 0.182 0.818 31 H 0.182 0.818 32 H 0.166 0.834 33 H 0.131 0.869 34 H 0.092 0.908 35 H 0.111 0.889 36 H 0.111 0.889 37 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -10.476 -16.693 -0.787 19.724 hybrid contribution -0.271 -0.765 -0.006 0.811 sum -10.747 -17.458 -0.793 20.516 Atomic orbital electron populations 1.23205 0.75171 1.05342 1.02487 1.86246 1.24900 1.22309 1.86949 1.19982 0.89618 0.84887 0.87612 1.21852 0.92855 0.99839 1.13057 1.20116 0.93440 0.87637 0.87311 1.17874 0.89098 0.91640 1.17908 1.21283 0.93540 0.96635 0.93728 1.21187 0.94319 0.97761 1.07465 1.21405 1.00455 0.91625 0.92963 1.21331 0.92844 1.00639 1.12384 1.19755 0.90574 0.87250 0.92067 1.83863 1.34100 1.12090 1.79046 1.20834 0.95325 0.81676 1.49347 0.89856 1.25103 1.03841 0.93163 0.95502 1.69724 1.38583 0.97895 1.49575 0.85607 0.79180 0.78873 0.80569 1.18579 1.20918 1.14771 1.68878 1.03953 1.33782 1.18503 1.24534 0.91457 0.94847 0.94052 1.86628 1.01323 1.03450 1.90527 1.23643 0.93636 1.05672 1.07071 1.68273 1.40546 0.97783 1.25761 0.92299 0.92284 0.84937 0.79858 0.81835 0.81788 0.83417 0.86943 0.90801 0.88866 0.88945 0.85144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.52 10.41 113.37 1.18 1.70 16 2 O -0.30 -7.11 10.49 -88.36 -0.93 -8.04 16 3 C 0.37 11.10 7.52 84.77 0.64 11.74 16 4 C -0.25 -7.71 9.48 22.79 0.22 -7.50 16 5 C 0.26 10.18 6.76 41.85 0.28 10.47 16 6 C -0.16 -6.40 5.89 -19.94 -0.12 -6.52 16 7 C -0.03 -0.94 9.43 22.48 0.21 -0.73 16 8 C -0.19 -4.89 10.03 22.26 0.22 -4.67 16 9 C -0.05 -1.44 10.03 22.29 0.22 -1.22 16 10 C -0.25 -10.80 9.12 22.37 0.20 -10.60 16 11 C 0.16 7.47 6.65 22.83 0.15 7.63 16 12 O -0.19 -10.47 6.47 -21.18 -0.14 -10.60 16 13 C -0.40 -23.74 9.89 67.92 0.67 -23.07 16 14 H 0.08 5.16 5.55 -2.91 -0.02 5.15 16 15 C 0.02 1.41 5.49 84.84 0.47 1.87 16 16 N -0.92 -56.50 13.96 21.62 0.30 -56.20 16 17 Si 0.93 48.09 26.30 68.60 1.80 49.90 16 18 H -0.26 -13.15 7.11 99.48 0.71 -12.44 16 19 H -0.28 -13.94 7.11 99.48 0.71 -13.23 16 20 H -0.22 -11.51 6.18 99.48 0.62 -10.89 16 21 N -0.53 -23.96 8.27 -185.74 -1.54 -25.50 16 22 C 0.33 12.92 7.85 180.47 1.42 14.34 16 23 S -0.05 -1.87 19.52 -56.49 -1.10 -2.97 16 24 C -0.13 -2.91 9.61 113.37 1.09 -1.82 16 25 N -0.59 -19.33 8.05 -309.50 -2.49 -21.82 16 26 H 0.06 0.98 8.12 -2.39 -0.02 0.96 16 27 H 0.06 0.98 8.12 -2.39 -0.02 0.96 16 28 H 0.13 1.21 8.14 -2.39 -0.02 1.19 16 29 H 0.18 4.13 6.31 -2.91 -0.02 4.11 16 30 H 0.16 3.22 6.26 -2.91 -0.02 3.20 16 31 H 0.16 2.77 8.06 -2.91 -0.02 2.75 16 32 H 0.15 3.59 8.06 -2.91 -0.02 3.57 16 33 H 0.11 5.29 5.73 -2.91 -0.02 5.28 16 34 H 0.28 16.14 8.31 -92.70 -0.77 15.37 16 35 H 0.09 1.94 8.11 -2.40 -0.02 1.92 16 36 H 0.09 1.93 8.11 -2.39 -0.02 1.91 16 37 H 0.13 2.12 8.14 -2.40 -0.02 2.10 16 Total: -1.00 -75.51 328.66 3.79 -71.72 By element: Atomic # 1 Polarization: 10.87 SS G_CDS: 1.03 Total: 11.89 kcal Atomic # 6 Polarization: -15.23 SS G_CDS: 6.86 Total: -8.37 kcal Atomic # 7 Polarization: -99.79 SS G_CDS: -3.73 Total: -103.52 kcal Atomic # 8 Polarization: -17.58 SS G_CDS: -1.06 Total: -18.64 kcal Atomic # 14 Polarization: 48.09 SS G_CDS: 1.80 Total: 49.90 kcal Atomic # 16 Polarization: -1.87 SS G_CDS: -1.10 Total: -2.97 kcal Total: -75.51 3.79 -71.72 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243584850.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.912 kcal (2) G-P(sol) polarization free energy of solvation -75.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.715 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds