Wall clock time and date at job start Tue Mar 31 2020 12:08:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35535 * 117.00028 * 2 1 4 4 C 1.39178 * 120.41559 * 179.97438 * 3 2 1 5 5 C 1.39434 * 118.40155 * 179.97438 * 4 3 2 6 6 C 1.48225 * 120.47499 * 179.97438 * 5 4 3 7 7 C 1.39495 * 120.05205 * 179.97438 * 6 5 4 8 8 C 1.37791 * 119.94189 * 180.02562 * 7 6 5 9 9 C 1.39032 * 120.05751 * 0.28528 * 8 7 6 10 10 O 1.35659 * 119.95077 * 179.71848 * 9 8 7 11 11 C 1.34817 * 116.99736 * 354.45024 * 10 9 8 12 12 H 1.08004 * 119.99921 * 5.06032 * 11 10 9 13 13 C 1.38672 * 120.00193 * 185.05169 * 11 10 9 14 14 N 1.31541 * 119.99524 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 119.99871 * 179.97438 * 13 11 10 16 16 H 1.48492 * 109.47393 * 0.02562 * 15 13 11 17 17 H 1.48504 * 109.46854 * 120.00458 * 15 13 11 18 18 H 1.48497 * 109.46896 * 240.00120 * 15 13 11 19 19 C 1.39038 * 120.10558 * 359.43897 * 9 8 7 20 20 C 1.37795 * 120.05633 * 0.55630 * 19 9 8 21 21 N 1.33309 * 119.04708 * 0.25626 * 5 4 3 22 22 C 1.32388 * 120.74487 * 359.48347 * 21 5 4 23 23 S 1.76201 * 119.12980 * 180.28892 * 22 21 5 24 24 C 1.80995 * 100.00032 * 180.23155 * 23 22 21 25 25 N 1.32577 * 121.74605 * 0.53078 * 22 21 5 26 26 H 1.09001 * 109.47218 * 59.99458 * 1 2 3 27 27 H 1.08998 * 109.47359 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.46926 * 300.00094 * 1 2 3 29 29 H 1.08000 * 120.79747 * 359.97438 * 4 3 2 30 30 H 1.07997 * 120.02625 * 0.04851 * 7 6 5 31 31 H 1.08000 * 119.97530 * 179.97438 * 8 7 6 32 32 H 0.96998 * 119.99461 * 180.02562 * 14 13 11 33 33 H 1.07997 * 119.96905 * 180.25611 * 19 9 8 34 34 H 1.07995 * 120.02716 * 179.74384 * 20 19 9 35 35 H 1.09010 * 109.46900 * 179.97438 * 24 23 22 36 36 H 1.08995 * 109.47400 * 299.99577 * 24 23 22 37 37 H 1.09002 * 109.46725 * 60.00672 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0443 1.2076 0.0000 4 6 3.4336 1.2905 0.0005 5 6 4.0226 2.5544 0.0000 6 6 5.4981 2.6962 0.0011 7 6 6.0779 3.9649 0.0000 8 6 7.4498 4.0940 0.0004 9 6 8.2559 2.9612 -0.0039 10 8 9.6062 3.0909 -0.0092 11 6 10.1007 4.3397 -0.1261 12 1 9.4315 5.1875 -0.1279 13 6 11.4684 4.5358 -0.2439 14 7 12.2833 3.5032 -0.2420 15 14 12.1533 6.2660 -0.4065 16 1 11.0368 7.2447 -0.3821 17 1 13.0769 6.5410 0.7234 18 1 12.8910 6.3877 -1.6896 19 6 7.6803 1.6956 0.0030 20 6 6.3089 1.5612 0.0026 21 7 3.2397 3.6333 0.0041 22 6 1.9213 3.5129 -0.0015 23 16 0.9271 4.9676 -0.0034 24 6 -0.7219 4.2214 -0.0041 25 7 1.3292 2.3267 -0.0010 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 4.0409 0.3974 0.0014 30 1 5.4522 4.8451 -0.0009 31 1 7.8993 5.0760 -0.0008 32 1 13.2400 3.6403 -0.3240 33 1 8.3085 0.8172 0.0037 34 1 5.8623 0.5779 0.0038 35 1 -1.4766 5.0079 -0.0048 36 1 -0.8404 3.6028 -0.8937 37 1 -0.8417 3.6042 0.8863 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243586877.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:08:46 Heat of formation + Delta-G solvation = 9.618242 kcal Electronic energy + Delta-G solvation = -22679.929576 eV Core-core repulsion = 19129.087705 eV Total energy + Delta-G solvation = -3550.841871 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.082 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.02497 -39.19554 -38.47062 -36.67473 -33.44822 -32.44255 -31.94176 -30.31788 -29.43661 -28.69825 -27.39795 -25.68646 -24.61508 -23.58275 -21.83511 -21.10014 -18.92950 -18.19421 -17.86780 -17.07272 -16.57530 -16.35621 -15.51505 -15.20570 -14.68352 -14.61483 -14.58793 -14.34153 -14.24612 -13.83277 -13.59323 -13.47688 -12.99528 -12.86932 -12.50515 -12.28938 -12.02098 -11.83613 -11.66210 -11.25245 -11.17794 -11.15626 -10.78663 -10.53145 -10.39767 -10.20006 -9.53973 -9.51517 -9.32839 -8.96098 -8.34646 -7.88288 -7.27831 -6.64880 -4.19549 0.69716 1.09131 1.13541 1.96677 2.15508 2.32808 2.81495 3.04723 3.06452 3.12383 3.77221 3.83431 4.06591 4.52884 4.68947 4.85344 4.92095 4.93094 4.94286 4.98622 5.01546 5.04339 5.28230 5.35618 5.36657 5.54529 5.63332 5.69469 6.01380 6.15851 6.26844 6.50899 6.72985 6.80592 6.91540 7.03639 7.11691 7.25420 7.28780 7.62512 7.81124 7.99066 8.80152 9.46115 10.51685 Molecular weight = 318.08amu Principal moments of inertia in cm(-1) A = 0.021705 B = 0.002719 C = 0.002422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1289.687070 B =10294.071341 C =11556.615934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.301 6.301 3 C 0.375 3.625 4 C -0.265 4.265 5 C 0.294 3.706 6 C -0.179 4.179 7 C -0.010 4.010 8 C -0.246 4.246 9 C 0.172 3.828 10 O -0.161 6.161 11 C -0.391 4.391 12 H 0.099 0.901 13 C 0.041 3.959 14 N -0.851 5.851 15 Si 0.945 3.055 16 H -0.264 1.264 17 H -0.274 1.274 18 H -0.274 1.274 19 C -0.198 4.198 20 C -0.036 4.036 21 N -0.527 5.527 22 C 0.339 3.661 23 S 0.001 5.999 24 C -0.143 4.143 25 N -0.603 5.603 26 H 0.058 0.942 27 H 0.097 0.903 28 H 0.058 0.942 29 H 0.152 0.848 30 H 0.124 0.876 31 H 0.133 0.867 32 H 0.274 0.726 33 H 0.124 0.876 34 H 0.119 0.881 35 H 0.103 0.897 36 H 0.087 0.913 37 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.109 -2.045 0.268 22.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.206 6.206 3 C 0.188 3.812 4 C -0.291 4.291 5 C 0.153 3.847 6 C -0.182 4.182 7 C -0.029 4.029 8 C -0.265 4.265 9 C 0.114 3.886 10 O -0.061 6.061 11 C -0.466 4.466 12 H 0.116 0.884 13 C -0.165 4.165 14 N -0.484 5.484 15 Si 0.769 3.231 16 H -0.188 1.188 17 H -0.199 1.199 18 H -0.199 1.199 19 C -0.217 4.217 20 C -0.055 4.055 21 N -0.249 5.249 22 C -0.038 4.038 23 S 0.234 5.766 24 C -0.313 4.313 25 N -0.339 5.339 26 H 0.077 0.923 27 H 0.116 0.884 28 H 0.077 0.923 29 H 0.170 0.830 30 H 0.142 0.858 31 H 0.151 0.849 32 H 0.084 0.916 33 H 0.142 0.858 34 H 0.137 0.863 35 H 0.122 0.878 36 H 0.106 0.894 37 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -21.865 -0.574 0.273 21.875 hybrid contribution 0.202 -1.271 -0.075 1.289 sum -21.663 -1.845 0.198 21.743 Atomic orbital electron populations 1.22887 0.77206 1.03091 1.02396 1.86254 1.22949 1.24118 1.87231 1.19819 0.89369 0.84265 0.87784 1.21710 0.92169 1.00568 1.14625 1.20001 0.93718 0.86425 0.84589 1.17744 0.87224 0.94446 1.18780 1.20911 0.93918 0.96157 0.91921 1.21144 0.93301 0.99274 1.12787 1.19579 0.84599 0.93473 0.90900 1.83932 1.14998 1.31811 1.75400 1.21553 0.91721 0.81696 1.51678 0.88364 1.25405 0.94913 1.00201 0.95981 1.70039 1.04187 1.30284 1.43891 0.85575 0.79322 0.79729 0.78468 1.18765 1.19920 1.19906 1.20103 0.93935 0.95475 1.12233 1.20687 0.92433 0.96850 0.95564 1.68525 1.03158 1.32991 1.20242 1.24394 0.91630 0.94283 0.93494 1.85869 0.97794 1.01984 1.90916 1.23510 0.95951 1.04972 1.06840 1.68237 1.40757 0.98100 1.26844 0.92284 0.88426 0.92299 0.83036 0.85823 0.84940 0.91635 0.85805 0.86269 0.87820 0.89406 0.89415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.33 10.41 101.05 1.05 1.38 16 2 O -0.30 -3.71 10.49 -18.30 -0.19 -3.91 16 3 C 0.37 5.39 7.52 -16.78 -0.13 5.27 16 4 C -0.27 -4.01 9.48 -38.79 -0.37 -4.38 16 5 C 0.29 5.03 6.75 -82.68 -0.56 4.47 16 6 C -0.18 -3.27 5.88 -104.86 -0.62 -3.89 16 7 C -0.01 -0.19 9.58 -39.28 -0.38 -0.56 16 8 C -0.25 -5.21 9.15 -39.45 -0.36 -5.57 16 9 C 0.17 3.95 6.65 -38.99 -0.26 3.69 16 10 O -0.16 -4.36 9.75 0.36 0.00 -4.36 16 11 C -0.39 -10.39 9.48 30.89 0.29 -10.10 16 12 H 0.10 2.42 5.19 -52.48 -0.27 2.14 16 13 C 0.04 1.08 5.49 -17.52 -0.10 0.98 16 14 N -0.85 -23.82 13.67 55.48 0.76 -23.06 16 15 Si 0.95 19.60 29.55 -169.99 -5.02 14.58 16 16 H -0.26 -5.25 7.11 56.52 0.40 -4.85 16 17 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 18 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 19 C -0.20 -3.96 9.98 -39.45 -0.39 -4.35 16 20 C -0.04 -0.62 9.43 -39.28 -0.37 -0.99 16 21 N -0.53 -9.10 9.54 -10.05 -0.10 -9.20 16 22 C 0.34 5.16 7.85 -90.97 -0.71 4.45 16 23 S 0.00 0.02 22.89 -107.50 -2.46 -2.44 16 24 C -0.14 -1.14 9.61 101.05 0.97 -0.17 16 25 N -0.60 -8.55 8.05 -13.57 -0.11 -8.66 16 26 H 0.06 0.48 8.12 -51.93 -0.42 0.06 16 27 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.06 0.48 8.12 -51.93 -0.42 0.06 16 29 H 0.15 2.00 6.30 -52.49 -0.33 1.67 16 30 H 0.12 2.23 7.57 -52.49 -0.40 1.83 16 31 H 0.13 2.78 5.62 -52.49 -0.30 2.48 16 32 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 33 H 0.12 2.33 8.06 -52.49 -0.42 1.91 16 34 H 0.12 1.68 6.25 -52.49 -0.33 1.35 16 35 H 0.10 0.57 8.14 -51.91 -0.42 0.14 16 36 H 0.09 0.71 8.11 -51.92 -0.42 0.29 16 37 H 0.09 0.71 8.11 -51.91 -0.42 0.28 16 LS Contribution 338.57 15.07 5.10 5.10 Total: -1.00 -30.24 338.57 -7.65 -37.89 By element: Atomic # 1 Polarization: 7.52 SS G_CDS: -3.71 Total: 3.81 kcal Atomic # 6 Polarization: -7.83 SS G_CDS: -1.92 Total: -9.75 kcal Atomic # 7 Polarization: -41.47 SS G_CDS: 0.55 Total: -40.92 kcal Atomic # 8 Polarization: -8.08 SS G_CDS: -0.19 Total: -8.26 kcal Atomic # 14 Polarization: 19.60 SS G_CDS: -5.02 Total: 14.58 kcal Atomic # 16 Polarization: 0.02 SS G_CDS: -2.46 Total: -2.44 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -30.24 -7.65 -37.89 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243586877.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.509 kcal (2) G-P(sol) polarization free energy of solvation -30.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.891 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds