Wall clock time and date at job start Tue Mar 31 2020 12:08:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35535 * 117.00028 * 2 1 4 4 C 1.39178 * 120.41559 * 179.97438 * 3 2 1 5 5 C 1.39434 * 118.40155 * 179.97438 * 4 3 2 6 6 C 1.48225 * 120.47499 * 179.97438 * 5 4 3 7 7 C 1.39495 * 120.05205 * 179.97438 * 6 5 4 8 8 C 1.37791 * 119.94189 * 180.02562 * 7 6 5 9 9 C 1.39032 * 120.05751 * 0.28528 * 8 7 6 10 10 O 1.35659 * 119.95077 * 179.71848 * 9 8 7 11 11 C 1.34817 * 116.99736 * 354.45024 * 10 9 8 12 12 H 1.08004 * 119.99921 * 5.06032 * 11 10 9 13 13 C 1.38672 * 120.00193 * 185.05169 * 11 10 9 14 14 N 1.31541 * 119.99524 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 119.99871 * 179.97438 * 13 11 10 16 16 H 1.48492 * 109.47393 * 0.02562 * 15 13 11 17 17 H 1.48504 * 109.46854 * 120.00458 * 15 13 11 18 18 H 1.48497 * 109.46896 * 240.00120 * 15 13 11 19 19 C 1.39038 * 120.10558 * 359.43897 * 9 8 7 20 20 C 1.37795 * 120.05633 * 0.55630 * 19 9 8 21 21 N 1.33309 * 119.04708 * 0.25626 * 5 4 3 22 22 C 1.32388 * 120.74487 * 359.48347 * 21 5 4 23 23 S 1.76201 * 119.12980 * 180.28892 * 22 21 5 24 24 C 1.80995 * 100.00032 * 180.23155 * 23 22 21 25 25 N 1.32577 * 121.74605 * 0.53078 * 22 21 5 26 26 H 1.09001 * 109.47218 * 59.99458 * 1 2 3 27 27 H 1.08998 * 109.47359 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.46926 * 300.00094 * 1 2 3 29 29 H 1.08000 * 120.79747 * 359.97438 * 4 3 2 30 30 H 1.07997 * 120.02625 * 0.04851 * 7 6 5 31 31 H 1.08000 * 119.97530 * 179.97438 * 8 7 6 32 32 H 0.96998 * 119.99461 * 180.02562 * 14 13 11 33 33 H 1.07997 * 119.96905 * 180.25611 * 19 9 8 34 34 H 1.07995 * 120.02716 * 179.74384 * 20 19 9 35 35 H 1.09010 * 109.46900 * 179.97438 * 24 23 22 36 36 H 1.08995 * 109.47400 * 299.99577 * 24 23 22 37 37 H 1.09002 * 109.46725 * 60.00672 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0443 1.2076 0.0000 4 6 3.4336 1.2905 0.0005 5 6 4.0226 2.5544 0.0000 6 6 5.4981 2.6962 0.0011 7 6 6.0779 3.9649 0.0000 8 6 7.4498 4.0940 0.0004 9 6 8.2559 2.9612 -0.0039 10 8 9.6062 3.0909 -0.0092 11 6 10.1007 4.3397 -0.1261 12 1 9.4315 5.1875 -0.1279 13 6 11.4684 4.5358 -0.2439 14 7 12.2833 3.5032 -0.2420 15 14 12.1533 6.2660 -0.4065 16 1 11.0368 7.2447 -0.3821 17 1 13.0769 6.5410 0.7234 18 1 12.8910 6.3877 -1.6896 19 6 7.6803 1.6956 0.0030 20 6 6.3089 1.5612 0.0026 21 7 3.2397 3.6333 0.0041 22 6 1.9213 3.5129 -0.0015 23 16 0.9271 4.9676 -0.0034 24 6 -0.7219 4.2214 -0.0041 25 7 1.3292 2.3267 -0.0010 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 4.0409 0.3974 0.0014 30 1 5.4522 4.8451 -0.0009 31 1 7.8993 5.0760 -0.0008 32 1 13.2400 3.6403 -0.3240 33 1 8.3085 0.8172 0.0037 34 1 5.8623 0.5779 0.0038 35 1 -1.4766 5.0079 -0.0048 36 1 -0.8404 3.6028 -0.8937 37 1 -0.8417 3.6042 0.8863 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243586877.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:08:45 Heat of formation + Delta-G solvation = -9.537783 kcal Electronic energy + Delta-G solvation = -22680.760244 eV Core-core repulsion = 19129.087705 eV Total energy + Delta-G solvation = -3551.672538 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.082 amu Computer time = -1.09 seconds Orbital eigenvalues (eV) -42.19401 -40.82371 -39.57548 -38.27799 -34.81739 -34.18836 -33.16922 -31.88807 -30.58783 -29.63897 -28.32395 -27.48321 -25.84088 -24.89343 -23.40964 -22.54246 -20.20461 -19.80504 -19.04264 -18.81255 -17.62731 -17.33022 -16.82091 -16.55376 -16.17928 -16.12446 -15.72144 -15.54192 -15.48261 -15.28251 -14.95776 -14.56150 -14.34411 -14.20069 -13.59101 -13.54030 -13.36364 -13.01283 -12.80530 -12.75077 -12.63187 -12.54104 -12.10169 -12.04314 -11.57505 -11.48215 -11.23489 -10.79750 -10.58666 -10.54654 -9.91237 -9.01457 -8.78566 -8.52963 -6.19341 -0.58647 -0.10713 0.14415 0.55393 0.83908 1.17016 1.36933 1.44473 1.54879 1.85815 2.15357 2.47009 2.86744 2.87687 3.15897 3.38330 3.49088 3.70874 3.97663 4.08027 4.15048 4.29596 4.31978 4.37573 4.38322 4.39887 4.45250 4.66807 4.69189 4.80798 4.94068 5.01816 5.07486 5.21099 5.47483 5.51219 5.61266 5.77331 5.96383 6.01302 6.04654 6.77847 6.91625 7.66147 8.69099 Molecular weight = 318.08amu Principal moments of inertia in cm(-1) A = 0.021705 B = 0.002719 C = 0.002422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1289.687070 B =10294.071341 C =11556.615934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.303 6.303 3 C 0.374 3.626 4 C -0.262 4.262 5 C 0.274 3.726 6 C -0.160 4.160 7 C -0.015 4.015 8 C -0.250 4.250 9 C 0.142 3.858 10 O -0.214 6.214 11 C -0.416 4.416 12 H 0.106 0.894 13 C -0.017 4.017 14 N -0.912 5.912 15 Si 1.018 2.982 16 H -0.251 1.251 17 H -0.267 1.267 18 H -0.268 1.268 19 C -0.202 4.202 20 C -0.023 4.023 21 N -0.550 5.550 22 C 0.324 3.676 23 S -0.005 6.005 24 C -0.133 4.133 25 N -0.589 5.589 26 H 0.062 0.938 27 H 0.129 0.871 28 H 0.062 0.938 29 H 0.173 0.827 30 H 0.134 0.866 31 H 0.127 0.873 32 H 0.276 0.724 33 H 0.132 0.868 34 H 0.162 0.838 35 H 0.134 0.866 36 H 0.090 0.910 37 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.368 -2.410 0.225 26.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.208 6.208 3 C 0.186 3.814 4 C -0.288 4.288 5 C 0.132 3.868 6 C -0.162 4.162 7 C -0.034 4.034 8 C -0.269 4.269 9 C 0.089 3.911 10 O -0.118 6.118 11 C -0.492 4.492 12 H 0.123 0.877 13 C -0.216 4.216 14 N -0.548 5.548 15 Si 0.837 3.163 16 H -0.175 1.175 17 H -0.192 1.192 18 H -0.193 1.193 19 C -0.221 4.221 20 C -0.042 4.042 21 N -0.273 5.273 22 C -0.052 4.052 23 S 0.228 5.772 24 C -0.302 4.302 25 N -0.325 5.325 26 H 0.081 0.919 27 H 0.147 0.853 28 H 0.081 0.919 29 H 0.190 0.810 30 H 0.152 0.848 31 H 0.144 0.856 32 H 0.085 0.915 33 H 0.150 0.850 34 H 0.179 0.821 35 H 0.152 0.848 36 H 0.109 0.891 37 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -26.219 -0.947 0.234 26.237 hybrid contribution 0.772 -1.342 -0.046 1.549 sum -25.447 -2.289 0.188 25.551 Atomic orbital electron populations 1.23229 0.74941 1.05363 1.02718 1.86269 1.25133 1.22766 1.86597 1.19991 0.89484 0.85022 0.86929 1.21884 0.93037 1.00348 1.13503 1.19884 0.92954 0.87587 0.86374 1.18063 0.88572 0.94191 1.15393 1.21028 0.93011 0.97376 0.92015 1.21190 0.94114 0.98708 1.12863 1.20103 0.84009 0.95246 0.91793 1.83921 1.16748 1.32059 1.79121 1.21944 0.92453 0.82160 1.52614 0.87709 1.26595 0.94908 1.04623 0.95429 1.70164 1.04487 1.32799 1.47384 0.84533 0.78703 0.74432 0.78621 1.17473 1.19225 1.19252 1.20388 0.95265 0.94708 1.11778 1.21054 0.91090 0.98598 0.93500 1.68493 1.04353 1.33454 1.20968 1.24985 0.91425 0.95707 0.93060 1.85956 0.99971 1.01251 1.90039 1.23637 0.93647 1.05847 1.07055 1.68341 1.40362 0.97871 1.25974 0.91929 0.85319 0.91938 0.81010 0.84775 0.85555 0.91521 0.85043 0.82070 0.84784 0.89116 0.89120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 10.41 113.37 1.18 1.59 16 2 O -0.30 -6.34 10.49 -88.39 -0.93 -7.26 16 3 C 0.37 9.52 7.52 84.77 0.64 10.16 16 4 C -0.26 -7.08 9.48 22.78 0.22 -6.86 16 5 C 0.27 8.76 6.75 41.86 0.28 9.04 16 6 C -0.16 -5.59 5.88 -20.02 -0.12 -5.70 16 7 C -0.02 -0.58 9.58 22.47 0.22 -0.37 16 8 C -0.25 -10.92 9.15 22.35 0.20 -10.71 16 9 C 0.14 6.80 6.65 22.65 0.15 6.96 16 10 O -0.21 -12.38 9.75 -21.61 -0.21 -12.59 16 11 C -0.42 -23.48 9.48 67.92 0.64 -22.84 16 12 H 0.11 5.46 5.19 -2.91 -0.02 5.44 16 13 C -0.02 -0.91 5.49 84.84 0.47 -0.44 16 14 N -0.91 -54.18 13.67 21.62 0.30 -53.88 16 15 Si 1.02 41.75 29.55 68.60 2.03 43.77 16 16 H -0.25 -9.60 7.11 99.48 0.71 -8.89 16 17 H -0.27 -10.52 7.11 99.48 0.71 -9.81 16 18 H -0.27 -10.54 7.11 99.48 0.71 -9.84 16 19 C -0.20 -8.11 9.98 22.36 0.22 -7.89 16 20 C -0.02 -0.77 9.43 22.47 0.21 -0.56 16 21 N -0.55 -18.00 9.54 -185.71 -1.77 -19.77 16 22 C 0.32 9.11 7.85 180.47 1.42 10.53 16 23 S -0.01 -0.11 22.89 -56.49 -1.29 -1.40 16 24 C -0.13 -1.62 9.61 113.37 1.09 -0.53 16 25 N -0.59 -14.88 8.05 -309.50 -2.49 -17.37 16 26 H 0.06 0.78 8.12 -2.39 -0.02 0.76 16 27 H 0.13 0.88 8.14 -2.39 -0.02 0.86 16 28 H 0.06 0.78 8.12 -2.39 -0.02 0.76 16 29 H 0.17 3.80 6.30 -2.91 -0.02 3.78 16 30 H 0.13 4.80 7.57 -2.91 -0.02 4.77 16 31 H 0.13 5.58 5.62 -2.91 -0.02 5.56 16 32 H 0.28 14.93 8.31 -92.71 -0.77 14.16 16 33 H 0.13 5.00 8.06 -2.91 -0.02 4.98 16 34 H 0.16 3.91 6.25 -2.91 -0.02 3.89 16 35 H 0.13 0.88 8.14 -2.39 -0.02 0.86 16 36 H 0.09 1.12 8.11 -2.40 -0.02 1.10 16 37 H 0.09 1.12 8.11 -2.39 -0.02 1.10 16 Total: -1.00 -70.22 338.57 3.57 -66.65 By element: Atomic # 1 Polarization: 18.38 SS G_CDS: 1.12 Total: 19.50 kcal Atomic # 6 Polarization: -24.46 SS G_CDS: 6.82 Total: -17.64 kcal Atomic # 7 Polarization: -87.06 SS G_CDS: -3.97 Total: -91.03 kcal Atomic # 8 Polarization: -18.72 SS G_CDS: -1.14 Total: -19.85 kcal Atomic # 14 Polarization: 41.75 SS G_CDS: 2.03 Total: 43.77 kcal Atomic # 16 Polarization: -0.11 SS G_CDS: -1.29 Total: -1.40 kcal Total: -70.22 3.57 -66.65 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243586877.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.116 kcal (2) G-P(sol) polarization free energy of solvation -70.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.654 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = -1.09 seconds