Wall clock time and date at job start Tue Mar 31 2020 12:08:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35461 * 117.00251 * 2 1 4 4 N 1.32599 * 120.53732 * 0.20879 * 3 2 1 5 5 C 1.32562 * 120.76750 * 180.26838 * 4 3 2 6 6 S 1.76200 * 119.04006 * 179.75716 * 5 4 3 7 7 C 1.80999 * 99.99932 * 180.02562 * 6 5 4 8 8 N 1.32601 * 121.91654 * 359.77610 * 5 4 3 9 9 C 1.32243 * 121.00542 * 359.97438 * 8 5 4 10 10 C 1.39467 * 119.11917 * 359.97438 * 9 8 5 11 11 C 1.48235 * 120.86776 * 179.97438 * 10 9 8 12 12 C 1.39483 * 120.05543 * 130.23328 * 11 10 9 13 13 C 1.37838 * 119.94066 * 180.27962 * 12 11 10 14 14 C 1.38992 * 120.05714 * 359.47114 * 13 12 11 15 15 O 1.35711 * 119.94387 * 180.27988 * 14 13 12 16 16 C 1.34814 * 116.99648 * 354.44778 * 15 14 13 17 17 H 1.08001 * 120.00404 * 5.05983 * 16 15 14 18 18 C 1.38629 * 119.99935 * 185.05761 * 16 15 14 19 19 N 1.31575 * 120.00127 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 119.99939 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.47539 * 0.02562 * 20 18 16 22 22 H 1.48494 * 109.47239 * 120.00253 * 20 18 16 23 23 H 1.48507 * 109.47017 * 239.99700 * 20 18 16 24 24 C 1.39002 * 120.11438 * 0.29597 * 14 13 12 25 25 C 1.37829 * 120.05757 * 359.96097 * 24 14 13 26 26 H 1.08994 * 109.47712 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.46851 * 300.00975 * 1 2 3 28 28 H 1.09005 * 109.46882 * 60.00052 * 1 2 3 29 29 H 1.09001 * 109.47259 * 59.99487 * 7 6 5 30 30 H 1.09000 * 109.47159 * 179.97438 * 7 6 5 31 31 H 1.08996 * 109.47136 * 299.99913 * 7 6 5 32 32 H 1.08001 * 120.43984 * 180.02562 * 9 8 5 33 33 H 1.07999 * 120.02578 * 0.04615 * 12 11 10 34 34 H 1.08000 * 119.96523 * 179.75215 * 13 12 11 35 35 H 0.96993 * 120.00255 * 179.97438 * 19 18 16 36 36 H 1.08005 * 119.96656 * 179.97438 * 24 14 13 37 37 H 1.08007 * 120.03050 * 179.97438 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0440 1.2069 0.0000 4 7 1.3323 2.3258 0.0042 5 6 1.9294 3.5093 -0.0012 6 16 0.9393 4.9668 -0.0018 7 6 2.2372 6.2284 -0.0105 8 7 3.2501 3.6282 -0.0064 9 6 4.0302 2.5604 -0.0060 10 6 3.4468 1.2936 0.0006 11 6 4.2843 0.0705 0.0007 12 6 4.0397 -0.9435 0.9267 13 6 4.8236 -2.0773 0.9284 14 6 5.8500 -2.2154 0.0015 15 8 6.6168 -3.3351 0.0016 16 6 6.4065 -4.2207 0.9961 17 1 5.6012 -4.0631 1.6983 18 6 7.2241 -5.3337 1.1175 19 7 8.2055 -5.5255 0.2624 20 14 6.9323 -6.5611 2.4951 21 1 5.7750 -6.1199 3.3143 22 1 6.6465 -7.8977 1.9148 23 1 8.1433 -6.6417 3.3509 24 6 6.0928 -1.2084 -0.9255 25 6 5.3152 -0.0704 -0.9281 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5140 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 2.8526 6.1104 -0.9025 30 1 1.7814 7.2185 -0.0123 31 1 2.8592 6.1159 0.8774 32 1 5.1048 2.6678 -0.0098 33 1 3.2392 -0.8388 1.6440 34 1 4.6371 -2.8609 1.6478 35 1 8.7777 -6.3040 0.3475 36 1 6.8913 -1.3180 -1.6444 37 1 5.5044 0.7119 -1.6482 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243592245.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:08:48 Heat of formation + Delta-G solvation = 9.686507 kcal Electronic energy + Delta-G solvation = -22981.022444 eV Core-core repulsion = 19430.183533 eV Total energy + Delta-G solvation = -3550.838911 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.082 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.12661 -38.99703 -38.42332 -36.64672 -33.37129 -32.73656 -32.03610 -30.30487 -29.23940 -28.26885 -27.48936 -25.59181 -24.18107 -23.79408 -21.89181 -20.92299 -19.22324 -18.26506 -17.98515 -17.18474 -16.52667 -16.26035 -15.63144 -14.88837 -14.72599 -14.64561 -14.57279 -14.41947 -13.72568 -13.67896 -13.65937 -13.50870 -12.91498 -12.86923 -12.69518 -12.16362 -11.86763 -11.74326 -11.71916 -11.49354 -11.05478 -10.98664 -10.75826 -10.50439 -10.49341 -10.42932 -9.55988 -9.51683 -9.27890 -8.88343 -8.28568 -7.99145 -7.10238 -6.54564 -4.11749 0.65538 1.06529 1.11940 1.95051 2.16226 2.22579 2.91689 3.07628 3.09330 3.14934 3.61935 3.89575 4.05628 4.46231 4.60925 4.78507 4.91973 4.99195 4.99306 5.10298 5.16118 5.19644 5.20431 5.37818 5.51300 5.58965 5.62900 5.72590 6.05263 6.14774 6.30712 6.53327 6.74193 6.82380 6.93209 7.08971 7.15588 7.27827 7.34873 7.70271 7.79359 7.90719 8.90929 9.59113 10.62896 Molecular weight = 318.08amu Principal moments of inertia in cm(-1) A = 0.026640 B = 0.002700 C = 0.002554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1050.804787 B =10366.513906 C =10960.588374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.282 6.282 3 C 0.371 3.629 4 N -0.555 5.555 5 C 0.312 3.688 6 S -0.011 6.011 7 C -0.140 4.140 8 N -0.541 5.541 9 C 0.176 3.824 10 C -0.123 4.123 11 C -0.151 4.151 12 C -0.035 4.035 13 C -0.234 4.234 14 C 0.162 3.838 15 O -0.171 6.171 16 C -0.391 4.391 17 H 0.095 0.905 18 C 0.040 3.960 19 N -0.858 5.858 20 Si 0.942 3.058 21 H -0.266 1.266 22 H -0.275 1.275 23 H -0.275 1.275 24 C -0.193 4.193 25 C -0.054 4.054 26 H 0.100 0.900 27 H 0.060 0.940 28 H 0.060 0.940 29 H 0.090 0.910 30 H 0.103 0.897 31 H 0.090 0.910 32 H 0.178 0.822 33 H 0.107 0.893 34 H 0.130 0.870 35 H 0.271 0.729 36 H 0.120 0.880 37 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.355 17.148 0.144 21.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.185 6.185 3 C 0.181 3.819 4 N -0.288 5.288 5 C -0.063 4.063 6 S 0.222 5.778 7 C -0.309 4.309 8 N -0.263 5.263 9 C 0.012 3.988 10 C -0.131 4.131 11 C -0.154 4.154 12 C -0.053 4.053 13 C -0.254 4.254 14 C 0.107 3.893 15 O -0.073 6.073 16 C -0.467 4.467 17 H 0.112 0.888 18 C -0.165 4.165 19 N -0.492 5.492 20 Si 0.767 3.233 21 H -0.190 1.190 22 H -0.201 1.201 23 H -0.200 1.200 24 C -0.212 4.212 25 C -0.072 4.072 26 H 0.118 0.882 27 H 0.078 0.922 28 H 0.078 0.922 29 H 0.109 0.891 30 H 0.122 0.878 31 H 0.109 0.891 32 H 0.195 0.805 33 H 0.125 0.875 34 H 0.147 0.853 35 H 0.081 0.919 36 H 0.138 0.862 37 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -13.673 17.581 -0.042 22.272 hybrid contribution 1.397 -1.593 0.699 2.231 sum -12.277 15.988 0.658 20.168 Atomic orbital electron populations 1.22969 0.77163 1.03421 1.02466 1.86390 1.22755 1.23113 1.86262 1.20213 0.89048 0.84472 0.88196 1.67976 1.40564 0.97598 1.22661 1.24385 0.90763 0.95328 0.95833 1.85678 1.08970 0.92056 1.91135 1.23528 1.01095 0.98948 1.07371 1.68644 1.03992 1.34024 1.19615 1.23225 1.00332 0.85592 0.89659 1.19643 0.90369 0.96186 1.06917 1.17690 1.00678 0.94340 1.02645 1.20682 0.96600 0.92011 0.96022 1.21074 0.99975 1.00158 1.04161 1.19480 0.89967 0.87044 0.92835 1.83960 1.52535 1.24676 1.46152 1.21428 1.16369 1.01837 1.07081 0.88776 1.25328 0.94991 0.97682 0.98511 1.70050 1.16375 1.28110 1.34693 0.85624 0.78720 0.79506 0.79474 1.18999 1.20057 1.20038 1.20104 1.04088 0.94022 1.02976 1.20601 0.93570 0.96458 0.96577 0.88152 0.92161 0.92158 0.89064 0.87838 0.89055 0.80526 0.87507 0.85279 0.91895 0.86160 0.86916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.39 10.41 101.05 1.05 1.44 16 2 O -0.28 -4.27 9.02 -18.07 -0.16 -4.43 16 3 C 0.37 5.81 7.46 -16.35 -0.12 5.69 16 4 N -0.56 -8.33 9.33 -13.23 -0.12 -8.45 16 5 C 0.31 4.35 7.85 -90.80 -0.71 3.64 16 6 S -0.01 -0.12 22.89 -107.50 -2.46 -2.58 16 7 C -0.14 -1.07 9.61 101.05 0.97 -0.09 16 8 N -0.54 -7.35 9.10 -13.22 -0.12 -7.47 16 9 C 0.18 2.40 10.82 -16.92 -0.18 2.21 16 10 C -0.12 -1.91 5.50 -104.46 -0.57 -2.49 16 11 C -0.15 -2.62 5.34 -104.86 -0.56 -3.18 16 12 C -0.03 -0.64 8.85 -39.26 -0.35 -0.99 16 13 C -0.23 -4.98 9.15 -39.45 -0.36 -5.34 16 14 C 0.16 3.78 6.65 -39.02 -0.26 3.52 16 15 O -0.17 -4.73 9.75 0.21 0.00 -4.73 16 16 C -0.39 -10.62 9.48 30.88 0.29 -10.33 16 17 H 0.09 2.37 5.19 -52.49 -0.27 2.09 16 18 C 0.04 1.07 5.49 -17.52 -0.10 0.97 16 19 N -0.86 -24.56 13.67 55.48 0.76 -23.80 16 20 Si 0.94 20.01 29.55 -169.99 -5.02 14.99 16 21 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 22 H -0.28 -5.73 7.11 56.52 0.40 -5.33 16 23 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 24 C -0.19 -3.90 9.98 -39.45 -0.39 -4.29 16 25 C -0.05 -0.92 9.54 -39.27 -0.37 -1.30 16 26 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 27 H 0.06 0.64 8.12 -51.93 -0.42 0.22 16 28 H 0.06 0.65 8.12 -51.93 -0.42 0.22 16 29 H 0.09 0.72 8.11 -51.92 -0.42 0.30 16 30 H 0.10 0.52 8.14 -51.92 -0.42 0.10 16 31 H 0.09 0.73 8.11 -51.92 -0.42 0.31 16 32 H 0.18 1.96 8.06 -52.49 -0.42 1.54 16 33 H 0.11 1.82 7.75 -52.49 -0.41 1.42 16 34 H 0.13 2.75 5.62 -52.49 -0.30 2.45 16 35 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 36 H 0.12 2.33 8.06 -52.48 -0.42 1.90 16 37 H 0.11 1.61 8.05 -52.48 -0.42 1.18 16 LS Contribution 340.54 15.07 5.13 5.13 Total: -1.00 -31.02 340.54 -7.57 -38.59 By element: Atomic # 1 Polarization: 7.19 SS G_CDS: -3.91 Total: 3.28 kcal Atomic # 6 Polarization: -8.87 SS G_CDS: -1.67 Total: -10.54 kcal Atomic # 7 Polarization: -40.24 SS G_CDS: 0.51 Total: -39.73 kcal Atomic # 8 Polarization: -9.00 SS G_CDS: -0.16 Total: -9.16 kcal Atomic # 14 Polarization: 20.01 SS G_CDS: -5.02 Total: 14.99 kcal Atomic # 16 Polarization: -0.12 SS G_CDS: -2.46 Total: -2.58 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -31.02 -7.57 -38.59 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243592245.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.281 kcal (2) G-P(sol) polarization free energy of solvation -31.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.595 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds