Wall clock time and date at job start Tue Mar 31 2020 12:08:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35461 * 117.00251 * 2 1 4 4 N 1.32599 * 120.53732 * 0.20879 * 3 2 1 5 5 C 1.32562 * 120.76750 * 180.26838 * 4 3 2 6 6 S 1.76200 * 119.04006 * 179.75716 * 5 4 3 7 7 C 1.80999 * 99.99932 * 180.02562 * 6 5 4 8 8 N 1.32601 * 121.91654 * 359.77610 * 5 4 3 9 9 C 1.32243 * 121.00542 * 359.97438 * 8 5 4 10 10 C 1.39467 * 119.11917 * 359.97438 * 9 8 5 11 11 C 1.48235 * 120.86776 * 179.97438 * 10 9 8 12 12 C 1.39483 * 120.05543 * 130.23328 * 11 10 9 13 13 C 1.37838 * 119.94066 * 180.27962 * 12 11 10 14 14 C 1.38992 * 120.05714 * 359.47114 * 13 12 11 15 15 O 1.35711 * 119.94387 * 180.27988 * 14 13 12 16 16 C 1.34814 * 116.99648 * 354.44778 * 15 14 13 17 17 H 1.08001 * 120.00404 * 5.05983 * 16 15 14 18 18 C 1.38629 * 119.99935 * 185.05761 * 16 15 14 19 19 N 1.31575 * 120.00127 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 119.99939 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.47539 * 0.02562 * 20 18 16 22 22 H 1.48494 * 109.47239 * 120.00253 * 20 18 16 23 23 H 1.48507 * 109.47017 * 239.99700 * 20 18 16 24 24 C 1.39002 * 120.11438 * 0.29597 * 14 13 12 25 25 C 1.37829 * 120.05757 * 359.96097 * 24 14 13 26 26 H 1.08994 * 109.47712 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.46851 * 300.00975 * 1 2 3 28 28 H 1.09005 * 109.46882 * 60.00052 * 1 2 3 29 29 H 1.09001 * 109.47259 * 59.99487 * 7 6 5 30 30 H 1.09000 * 109.47159 * 179.97438 * 7 6 5 31 31 H 1.08996 * 109.47136 * 299.99913 * 7 6 5 32 32 H 1.08001 * 120.43984 * 180.02562 * 9 8 5 33 33 H 1.07999 * 120.02578 * 0.04615 * 12 11 10 34 34 H 1.08000 * 119.96523 * 179.75215 * 13 12 11 35 35 H 0.96993 * 120.00255 * 179.97438 * 19 18 16 36 36 H 1.08005 * 119.96656 * 179.97438 * 24 14 13 37 37 H 1.08007 * 120.03050 * 179.97438 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0440 1.2069 0.0000 4 7 1.3323 2.3258 0.0042 5 6 1.9294 3.5093 -0.0012 6 16 0.9393 4.9668 -0.0018 7 6 2.2372 6.2284 -0.0105 8 7 3.2501 3.6282 -0.0064 9 6 4.0302 2.5604 -0.0060 10 6 3.4468 1.2936 0.0006 11 6 4.2843 0.0705 0.0007 12 6 4.0397 -0.9435 0.9267 13 6 4.8236 -2.0773 0.9284 14 6 5.8500 -2.2154 0.0015 15 8 6.6168 -3.3351 0.0016 16 6 6.4065 -4.2207 0.9961 17 1 5.6012 -4.0631 1.6983 18 6 7.2241 -5.3337 1.1175 19 7 8.2055 -5.5255 0.2624 20 14 6.9323 -6.5611 2.4951 21 1 5.7750 -6.1199 3.3143 22 1 6.6465 -7.8977 1.9148 23 1 8.1433 -6.6417 3.3509 24 6 6.0928 -1.2084 -0.9255 25 6 5.3152 -0.0704 -0.9281 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5140 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 2.8526 6.1104 -0.9025 30 1 1.7814 7.2185 -0.0123 31 1 2.8592 6.1159 0.8774 32 1 5.1048 2.6678 -0.0098 33 1 3.2392 -0.8388 1.6440 34 1 4.6371 -2.8609 1.6478 35 1 8.7777 -6.3040 0.3475 36 1 6.8913 -1.3180 -1.6444 37 1 5.5044 0.7119 -1.6482 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243592245.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:08:47 Heat of formation + Delta-G solvation = -10.183597 kcal Electronic energy + Delta-G solvation = -22981.884076 eV Core-core repulsion = 19430.183533 eV Total energy + Delta-G solvation = -3551.700543 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.082 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.24999 -40.68551 -39.50386 -38.30064 -34.61024 -34.30906 -33.53060 -31.88053 -30.05008 -29.53909 -28.45220 -27.43892 -25.48495 -24.89741 -23.46337 -22.47063 -20.25748 -19.89333 -19.24269 -18.91526 -17.61061 -17.35591 -17.07135 -16.31936 -16.16131 -15.84762 -15.60464 -15.59487 -15.52421 -15.18297 -14.68890 -14.56926 -14.26026 -14.16928 -13.59289 -13.53010 -13.37164 -13.12646 -12.89782 -12.74115 -12.62184 -12.40530 -12.11058 -11.98769 -11.66791 -11.50928 -11.23284 -10.90048 -10.60284 -10.41029 -9.83933 -9.12688 -8.54517 -8.48406 -6.15580 -0.50234 0.01991 0.14992 0.58443 0.68700 1.20994 1.35959 1.43468 1.53773 1.87934 2.16951 2.47444 2.81032 3.01392 3.14618 3.46293 3.51197 3.64803 3.89563 4.07213 4.12140 4.28695 4.33948 4.37862 4.39851 4.42098 4.52803 4.66887 4.73263 4.93181 4.99775 5.05709 5.12622 5.23771 5.51138 5.64691 5.67863 5.69014 5.99005 6.01326 6.14647 6.69958 6.96362 7.74930 8.74300 Molecular weight = 318.08amu Principal moments of inertia in cm(-1) A = 0.026640 B = 0.002700 C = 0.002554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1050.804787 B =10366.513906 C =10960.588374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.302 6.302 3 C 0.368 3.632 4 N -0.567 5.567 5 C 0.305 3.695 6 S -0.003 6.003 7 C -0.135 4.135 8 N -0.542 5.542 9 C 0.194 3.806 10 C -0.154 4.154 11 C -0.119 4.119 12 C -0.038 4.038 13 C -0.239 4.239 14 C 0.125 3.875 15 O -0.225 6.225 16 C -0.412 4.412 17 H 0.102 0.898 18 C -0.021 4.021 19 N -0.917 5.917 20 Si 1.017 2.983 21 H -0.252 1.252 22 H -0.269 1.269 23 H -0.268 1.268 24 C -0.197 4.197 25 C -0.044 4.044 26 H 0.122 0.878 27 H 0.064 0.936 28 H 0.062 0.938 29 H 0.091 0.909 30 H 0.134 0.866 31 H 0.090 0.910 32 H 0.204 0.796 33 H 0.123 0.877 34 H 0.121 0.879 35 H 0.273 0.727 36 H 0.123 0.877 37 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.278 20.202 0.661 24.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.205 6.205 3 C 0.178 3.822 4 N -0.300 5.300 5 C -0.069 4.069 6 S 0.230 5.770 7 C -0.304 4.304 8 N -0.264 5.264 9 C 0.029 3.971 10 C -0.163 4.163 11 C -0.121 4.121 12 C -0.056 4.056 13 C -0.258 4.258 14 C 0.074 3.926 15 O -0.131 6.131 16 C -0.488 4.488 17 H 0.120 0.880 18 C -0.219 4.219 19 N -0.555 5.555 20 Si 0.837 3.163 21 H -0.175 1.175 22 H -0.194 1.194 23 H -0.193 1.193 24 C -0.217 4.217 25 C -0.062 4.062 26 H 0.140 0.860 27 H 0.083 0.917 28 H 0.081 0.919 29 H 0.110 0.890 30 H 0.152 0.848 31 H 0.109 0.891 32 H 0.221 0.779 33 H 0.141 0.859 34 H 0.139 0.861 35 H 0.082 0.918 36 H 0.141 0.859 37 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -15.662 20.703 0.473 25.964 hybrid contribution 1.681 -1.982 0.450 2.637 sum -13.981 18.721 0.923 23.384 Atomic orbital electron populations 1.23197 0.75289 1.05019 1.02778 1.86363 1.24762 1.23284 1.86072 1.20352 0.89255 0.84916 0.87693 1.68088 1.40550 0.97781 1.23602 1.25151 0.91467 0.96244 0.94053 1.85755 1.09825 0.91444 1.89931 1.23665 1.00281 0.99078 1.07332 1.68789 1.03852 1.33598 1.20161 1.23642 1.01557 0.84762 0.87130 1.19533 0.90271 0.95955 1.10522 1.17938 0.99405 0.94237 1.00516 1.20856 0.96531 0.91465 0.96771 1.21112 0.99992 1.01023 1.03693 1.20000 0.90721 0.87258 0.94668 1.83934 1.55010 1.26563 1.47582 1.21859 1.16949 1.02445 1.07578 0.88025 1.26559 0.94541 0.99546 1.01206 1.70184 1.18353 1.29480 1.37511 0.84547 0.79115 0.76586 0.76098 1.17538 1.19363 1.19304 1.20368 1.04705 0.94261 1.02320 1.20970 0.92426 0.96028 0.96770 0.85998 0.91738 0.91894 0.88997 0.84817 0.89088 0.77920 0.85883 0.86132 0.91755 0.85924 0.82949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.64 10.41 113.37 1.18 1.82 16 2 O -0.30 -8.60 9.02 -87.59 -0.79 -9.39 16 3 C 0.37 10.71 7.46 85.14 0.63 11.34 16 4 N -0.57 -15.67 9.33 -308.59 -2.88 -18.55 16 5 C 0.31 7.63 7.85 180.41 1.42 9.05 16 6 S 0.00 -0.05 22.89 -56.49 -1.29 -1.34 16 7 C -0.13 -1.54 9.61 113.37 1.09 -0.45 16 8 N -0.54 -12.90 9.10 -195.74 -1.78 -14.68 16 9 C 0.19 4.59 10.82 84.93 0.92 5.51 16 10 C -0.15 -4.37 5.50 -19.76 -0.11 -4.48 16 11 C -0.12 -3.87 5.34 -20.02 -0.11 -3.98 16 12 C -0.04 -1.37 8.85 22.48 0.20 -1.18 16 13 C -0.24 -10.38 9.15 22.36 0.20 -10.18 16 14 C 0.12 6.05 6.65 22.63 0.15 6.21 16 15 O -0.22 -13.24 9.75 -22.15 -0.22 -13.46 16 16 C -0.41 -23.61 9.48 67.91 0.64 -22.97 16 17 H 0.10 5.37 5.19 -2.91 -0.02 5.35 16 18 C -0.02 -1.15 5.49 84.82 0.47 -0.69 16 19 N -0.92 -55.47 13.67 21.61 0.30 -55.18 16 20 Si 1.02 42.32 29.55 68.60 2.03 44.34 16 21 H -0.25 -9.72 7.11 99.48 0.71 -9.01 16 22 H -0.27 -10.74 7.11 99.48 0.71 -10.03 16 23 H -0.27 -10.70 7.11 99.48 0.71 -9.99 16 24 C -0.20 -8.03 9.98 22.36 0.22 -7.81 16 25 C -0.04 -1.42 9.54 22.47 0.21 -1.21 16 26 H 0.12 1.90 8.14 -2.39 -0.02 1.88 16 27 H 0.06 1.25 8.12 -2.39 -0.02 1.23 16 28 H 0.06 1.24 8.12 -2.38 -0.02 1.22 16 29 H 0.09 1.11 8.11 -2.39 -0.02 1.09 16 30 H 0.13 0.76 8.14 -2.39 -0.02 0.74 16 31 H 0.09 1.12 8.11 -2.40 -0.02 1.10 16 32 H 0.20 3.60 8.06 -2.91 -0.02 3.58 16 33 H 0.12 4.04 7.75 -2.91 -0.02 4.02 16 34 H 0.12 5.34 5.62 -2.91 -0.02 5.32 16 35 H 0.27 15.09 8.31 -92.71 -0.77 14.32 16 36 H 0.12 4.84 8.06 -2.91 -0.02 4.82 16 37 H 0.15 3.74 8.05 -2.91 -0.02 3.71 16 Total: -1.00 -71.50 340.54 3.60 -67.90 By element: Atomic # 1 Polarization: 18.24 SS G_CDS: 1.11 Total: 19.35 kcal Atomic # 6 Polarization: -26.12 SS G_CDS: 7.13 Total: -19.00 kcal Atomic # 7 Polarization: -84.04 SS G_CDS: -4.36 Total: -88.40 kcal Atomic # 8 Polarization: -21.84 SS G_CDS: -1.01 Total: -22.85 kcal Atomic # 14 Polarization: 42.32 SS G_CDS: 2.03 Total: 44.34 kcal Atomic # 16 Polarization: -0.05 SS G_CDS: -1.29 Total: -1.34 kcal Total: -71.50 3.60 -67.90 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243592245.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.716 kcal (2) G-P(sol) polarization free energy of solvation -71.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.900 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds