Wall clock time and date at job start Tue Mar 31 2020 12:03:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35606 * 117.00153 * 2 1 4 4 C 1.39146 * 119.88394 * 0.25242 * 3 2 1 5 5 C 1.36415 * 120.43538 * 180.25692 * 4 3 2 6 6 C 1.40906 * 120.19135 * 359.76039 * 5 4 3 7 7 C 1.41245 * 120.12091 * 179.97438 * 6 5 4 8 8 H 1.08007 * 119.99488 * 24.62520 * 7 6 5 9 9 C 1.39856 * 120.00495 * 204.62397 * 7 6 5 10 10 N 1.30896 * 119.99981 * 17.95137 * 9 7 6 11 11 Si 1.86798 * 120.00203 * 197.95436 * 9 7 6 12 12 H 1.48495 * 109.47275 * 59.99867 * 11 9 7 13 13 H 1.48504 * 109.47157 * 179.97438 * 11 9 7 14 14 H 1.48501 * 109.47129 * 299.99560 * 11 9 7 15 15 C 1.40617 * 119.76233 * 359.97438 * 6 5 4 16 16 C 1.38597 * 119.57050 * 359.97438 * 15 6 5 17 17 C 1.48325 * 120.09677 * 180.02562 * 16 15 6 18 18 C 1.39491 * 120.13388 * 270.23815 * 17 16 15 19 19 Cl 1.73602 * 120.07516 * 0.02562 * 18 17 16 20 20 C 1.38111 * 119.84909 * 180.23021 * 18 17 16 21 21 C 1.38325 * 120.10807 * 359.78898 * 20 18 17 22 22 C 1.38305 * 120.26664 * 359.97438 * 21 20 18 23 23 C 1.38038 * 120.15113 * 0.02562 * 22 21 20 24 24 C 1.50701 * 120.06249 * 179.97438 * 23 22 21 25 25 O 1.42906 * 109.46554 * 359.97438 * 24 23 22 26 26 H 1.08999 * 109.47079 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47125 * 300.00691 * 1 2 3 28 28 H 1.09008 * 109.46659 * 60.00186 * 1 2 3 29 29 H 1.07999 * 119.77985 * 359.97438 * 4 3 2 30 30 H 1.07998 * 119.90394 * 179.74457 * 5 4 3 31 31 H 0.96999 * 120.00538 * 180.02562 * 10 9 7 32 32 H 1.08000 * 120.21077 * 180.02562 * 15 6 5 33 33 H 1.08002 * 119.94654 * 179.76709 * 20 18 17 34 34 H 1.08004 * 119.86318 * 179.97438 * 21 20 18 35 35 H 1.08000 * 119.93075 * 180.02562 * 22 21 20 36 36 H 1.08996 * 109.47035 * 240.00404 * 24 23 22 37 37 H 1.08993 * 109.47065 * 119.99828 * 24 23 22 38 38 H 0.96701 * 113.99599 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0447 1.2082 0.0000 4 6 1.2846 2.3737 0.0053 5 6 1.8921 3.5951 0.0001 6 6 3.2982 3.6870 -0.0056 7 6 3.9257 4.9524 -0.0116 8 1 3.4054 5.8150 0.3778 9 6 5.2208 5.0884 -0.5217 10 7 5.7186 4.1607 -1.2995 11 14 6.2403 6.5938 -0.0928 12 1 6.4253 6.6635 1.3789 13 1 7.5666 6.4981 -0.7539 14 1 5.5398 7.8161 -0.5623 15 6 4.0744 2.5145 -0.0054 16 6 3.4468 1.2788 0.0010 17 6 4.2542 0.0345 0.0018 18 6 4.6349 -0.5541 -1.2042 19 17 4.1654 0.1684 -2.7113 20 6 5.3826 -1.7152 -1.1965 21 6 5.7572 -2.2914 0.0039 22 6 5.3864 -1.7091 1.2024 23 6 4.6391 -0.5485 1.2074 24 6 4.2357 0.0840 2.5144 25 8 4.7418 -0.6980 3.5981 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8901 29 1 0.2064 2.3109 0.0090 30 1 1.2937 4.4941 0.0001 31 1 6.6170 4.2548 -1.6530 32 1 5.1526 2.5765 -0.0094 33 1 5.6750 -2.1744 -2.1293 34 1 6.3416 -3.1997 0.0053 35 1 5.6822 -2.1633 2.1365 36 1 3.1484 0.1289 2.5760 37 1 4.6450 1.0926 2.5715 38 1 4.5200 -0.3489 4.4722 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243709727.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:03:41 Heat of formation + Delta-G solvation = -53.055112 kcal Electronic energy + Delta-G solvation = -24445.502346 eV Core-core repulsion = 20857.606297 eV Total energy + Delta-G solvation = -3587.896049 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.081 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.51548 -38.33890 -36.48833 -36.32091 -35.59389 -33.45761 -32.16086 -30.70518 -29.13683 -28.41942 -26.84814 -25.70791 -24.64437 -22.63766 -21.08133 -20.75412 -19.94167 -17.48179 -17.08965 -16.86909 -16.20210 -15.36551 -14.99838 -14.95143 -14.67625 -14.56132 -14.45568 -13.75136 -13.67139 -13.12932 -12.93437 -12.70688 -12.41264 -12.04308 -11.92117 -11.61744 -11.30927 -11.09041 -11.00732 -10.90753 -10.88353 -10.79818 -10.66720 -10.18157 -10.06829 -9.97181 -9.87468 -9.44806 -9.03756 -8.19986 -8.07267 -7.60332 -7.06767 -6.72762 -4.28061 1.65072 1.69742 2.66075 2.81390 2.82708 3.07670 3.09061 3.17931 3.93848 4.04538 4.30325 4.42623 4.53884 5.20413 5.22373 5.37962 5.50879 5.62576 5.68050 5.75905 5.80099 5.82449 5.86414 5.88535 6.08539 6.17025 6.26625 6.44956 6.70020 6.74017 6.91462 6.93684 7.04103 7.14156 7.20573 7.35416 7.43835 7.71148 7.79948 7.91037 8.13326 8.40783 8.58321 8.86367 8.91502 10.20810 Molecular weight = 318.08amu Principal moments of inertia in cm(-1) A = 0.010897 B = 0.005714 C = 0.005342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2568.823197 B = 4899.226200 C = 5240.205533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.325 6.325 3 C 0.017 3.983 4 C -0.169 4.169 5 C -0.187 4.187 6 C 0.088 3.912 7 C -0.464 4.464 8 H 0.076 0.924 9 C 0.076 3.924 10 N -0.790 5.790 11 Si 0.904 3.096 12 H -0.265 1.265 13 H -0.279 1.279 14 H -0.267 1.267 15 C -0.107 4.107 16 C -0.068 4.068 17 C 0.014 3.986 18 C -0.018 4.018 19 Cl -0.059 7.059 20 C -0.120 4.120 21 C -0.126 4.126 22 C -0.101 4.101 23 C -0.070 4.070 24 C 0.123 3.877 25 O -0.575 6.575 26 H 0.080 0.920 27 H 0.041 0.959 28 H 0.042 0.958 29 H 0.097 0.903 30 H 0.095 0.905 31 H 0.281 0.719 32 H 0.127 0.873 33 H 0.126 0.874 34 H 0.123 0.877 35 H 0.131 0.869 36 H 0.064 0.936 37 H 0.067 0.933 38 H 0.379 0.621 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.673 -8.461 3.785 9.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.240 6.240 3 C -0.027 4.027 4 C -0.188 4.188 5 C -0.207 4.207 6 C 0.085 3.915 7 C -0.494 4.494 8 H 0.094 0.906 9 C -0.142 4.142 10 N -0.416 5.416 11 Si 0.729 3.271 12 H -0.189 1.189 13 H -0.204 1.204 14 H -0.191 1.191 15 C -0.127 4.127 16 C -0.069 4.069 17 C 0.013 3.987 18 C -0.045 4.045 19 Cl -0.030 7.030 20 C -0.139 4.139 21 C -0.144 4.144 22 C -0.119 4.119 23 C -0.070 4.070 24 C 0.046 3.954 25 O -0.380 6.380 26 H 0.099 0.901 27 H 0.060 0.940 28 H 0.061 0.939 29 H 0.115 0.885 30 H 0.113 0.887 31 H 0.092 0.908 32 H 0.145 0.855 33 H 0.144 0.856 34 H 0.141 0.859 35 H 0.149 0.851 36 H 0.082 0.918 37 H 0.085 0.915 38 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges -1.185 -8.985 2.990 9.543 hybrid contribution -0.082 1.336 0.220 1.357 sum -1.267 -7.649 3.210 8.391 Atomic orbital electron populations 1.22707 0.81114 1.01706 1.00227 1.85879 1.18918 1.28313 1.90875 1.18425 0.90438 0.83050 1.10739 1.20334 0.97383 0.92819 1.08277 1.20611 0.94815 0.95090 1.10173 1.17455 0.90493 0.93217 0.90286 1.19378 0.98683 0.94856 1.36472 0.90582 1.25844 0.97985 0.97622 0.92707 1.69828 1.16464 1.33356 1.21939 0.86438 0.78907 0.81939 0.79865 1.18941 1.20379 1.19132 1.21197 0.99796 0.88916 1.02754 1.17636 0.88720 0.91577 1.08950 1.18409 0.95680 0.94430 0.90171 1.20926 1.00806 0.95433 0.87336 1.98363 1.90997 1.83088 1.30528 1.20909 0.99203 0.94977 0.98792 1.20971 1.01335 1.00280 0.91811 1.20886 0.97654 0.95198 0.98165 1.19632 0.98685 0.95721 0.92997 1.20823 0.97791 0.93201 0.83621 1.86363 1.80047 1.54635 1.17003 0.90103 0.94037 0.93931 0.88483 0.88678 0.90794 0.85504 0.85649 0.85862 0.85108 0.91808 0.91544 0.77424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.59 9.80 101.05 0.99 1.58 16 2 O -0.32 -6.54 9.93 -18.52 -0.18 -6.73 16 3 C 0.02 0.38 6.72 -38.44 -0.26 0.12 16 4 C -0.17 -3.66 8.95 -39.90 -0.36 -4.02 16 5 C -0.19 -4.38 9.72 -39.23 -0.38 -4.77 16 6 C 0.09 2.23 5.57 -106.85 -0.60 1.64 16 7 C -0.46 -11.86 9.03 -37.84 -0.34 -12.20 16 8 H 0.08 1.87 7.91 -52.48 -0.41 1.45 16 9 C 0.08 1.87 5.13 -17.35 -0.09 1.78 16 10 N -0.79 -20.07 10.96 55.54 0.61 -19.46 16 11 Si 0.90 18.43 29.60 -169.99 -5.03 13.40 16 12 H -0.26 -5.35 7.11 56.52 0.40 -4.95 16 13 H -0.28 -5.59 7.11 56.52 0.40 -5.19 16 14 H -0.27 -5.39 7.11 56.52 0.40 -4.98 16 15 C -0.11 -2.65 8.41 -38.55 -0.32 -2.98 16 16 C -0.07 -1.54 3.42 -104.81 -0.36 -1.89 16 17 C 0.01 0.29 4.82 -104.87 -0.51 -0.22 16 18 C -0.02 -0.36 6.34 -39.16 -0.25 -0.61 16 19 Cl -0.06 -1.19 28.03 -51.86 -1.45 -2.64 16 20 C -0.12 -1.99 9.82 -39.60 -0.39 -2.38 16 21 C -0.13 -1.91 10.04 -39.52 -0.40 -2.30 16 22 C -0.10 -1.67 9.37 -39.63 -0.37 -2.04 16 23 C -0.07 -1.31 5.91 -104.29 -0.62 -1.93 16 24 C 0.12 2.07 6.46 36.01 0.23 2.30 16 25 O -0.57 -8.13 12.14 -35.23 -0.43 -8.56 16 26 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 27 H 0.04 0.59 7.64 -51.93 -0.40 0.19 16 28 H 0.04 0.64 7.66 -51.92 -0.40 0.24 16 29 H 0.10 1.83 6.26 -52.49 -0.33 1.50 16 30 H 0.10 2.09 8.06 -52.49 -0.42 1.67 16 31 H 0.28 6.62 8.30 -40.82 -0.34 6.28 16 32 H 0.13 3.34 6.17 -52.49 -0.32 3.01 16 33 H 0.13 1.77 8.06 -52.49 -0.42 1.34 16 34 H 0.12 1.45 8.06 -52.48 -0.42 1.03 16 35 H 0.13 1.98 7.00 -52.49 -0.37 1.61 16 36 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 37 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 38 H 0.38 3.48 9.12 45.56 0.42 3.90 16 LS Contribution 340.13 15.07 5.13 5.13 Total: -1.00 -28.81 340.13 -8.85 -37.66 By element: Atomic # 1 Polarization: 12.61 SS G_CDS: -3.48 Total: 9.13 kcal Atomic # 6 Polarization: -23.91 SS G_CDS: -4.01 Total: -27.92 kcal Atomic # 7 Polarization: -20.07 SS G_CDS: 0.61 Total: -19.46 kcal Atomic # 8 Polarization: -14.68 SS G_CDS: -0.61 Total: -15.29 kcal Atomic # 14 Polarization: 18.43 SS G_CDS: -5.03 Total: 13.40 kcal Atomic # 17 Polarization: -1.19 SS G_CDS: -1.45 Total: -2.64 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -28.81 -8.85 -37.66 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243709727.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.390 kcal (2) G-P(sol) polarization free energy of solvation -28.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.665 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds