Wall clock time and date at job start Tue Mar 31 2020 12:03:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35606 * 117.00153 * 2 1 4 4 C 1.39146 * 119.88394 * 0.25242 * 3 2 1 5 5 C 1.36415 * 120.43538 * 180.25692 * 4 3 2 6 6 C 1.40906 * 120.19135 * 359.76039 * 5 4 3 7 7 C 1.41245 * 120.12091 * 179.97438 * 6 5 4 8 8 H 1.08007 * 119.99488 * 24.62520 * 7 6 5 9 9 C 1.39856 * 120.00495 * 204.62397 * 7 6 5 10 10 N 1.30896 * 119.99981 * 17.95137 * 9 7 6 11 11 Si 1.86798 * 120.00203 * 197.95436 * 9 7 6 12 12 H 1.48495 * 109.47275 * 59.99867 * 11 9 7 13 13 H 1.48504 * 109.47157 * 179.97438 * 11 9 7 14 14 H 1.48501 * 109.47129 * 299.99560 * 11 9 7 15 15 C 1.40617 * 119.76233 * 359.97438 * 6 5 4 16 16 C 1.38597 * 119.57050 * 359.97438 * 15 6 5 17 17 C 1.48325 * 120.09677 * 180.02562 * 16 15 6 18 18 C 1.39491 * 120.13388 * 270.23815 * 17 16 15 19 19 Cl 1.73602 * 120.07516 * 0.02562 * 18 17 16 20 20 C 1.38111 * 119.84909 * 180.23021 * 18 17 16 21 21 C 1.38325 * 120.10807 * 359.78898 * 20 18 17 22 22 C 1.38305 * 120.26664 * 359.97438 * 21 20 18 23 23 C 1.38038 * 120.15113 * 0.02562 * 22 21 20 24 24 C 1.50701 * 120.06249 * 179.97438 * 23 22 21 25 25 O 1.42906 * 109.46554 * 359.97438 * 24 23 22 26 26 H 1.08999 * 109.47079 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47125 * 300.00691 * 1 2 3 28 28 H 1.09008 * 109.46659 * 60.00186 * 1 2 3 29 29 H 1.07999 * 119.77985 * 359.97438 * 4 3 2 30 30 H 1.07998 * 119.90394 * 179.74457 * 5 4 3 31 31 H 0.96999 * 120.00538 * 180.02562 * 10 9 7 32 32 H 1.08000 * 120.21077 * 180.02562 * 15 6 5 33 33 H 1.08002 * 119.94654 * 179.76709 * 20 18 17 34 34 H 1.08004 * 119.86318 * 179.97438 * 21 20 18 35 35 H 1.08000 * 119.93075 * 180.02562 * 22 21 20 36 36 H 1.08996 * 109.47035 * 240.00404 * 24 23 22 37 37 H 1.08993 * 109.47065 * 119.99828 * 24 23 22 38 38 H 0.96701 * 113.99599 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0447 1.2082 0.0000 4 6 1.2846 2.3737 0.0053 5 6 1.8921 3.5951 0.0001 6 6 3.2982 3.6870 -0.0056 7 6 3.9257 4.9524 -0.0116 8 1 3.4054 5.8150 0.3778 9 6 5.2208 5.0884 -0.5217 10 7 5.7186 4.1607 -1.2995 11 14 6.2403 6.5938 -0.0928 12 1 6.4253 6.6635 1.3789 13 1 7.5666 6.4981 -0.7539 14 1 5.5398 7.8161 -0.5623 15 6 4.0744 2.5145 -0.0054 16 6 3.4468 1.2788 0.0010 17 6 4.2542 0.0345 0.0018 18 6 4.6349 -0.5541 -1.2042 19 17 4.1654 0.1684 -2.7113 20 6 5.3826 -1.7152 -1.1965 21 6 5.7572 -2.2914 0.0039 22 6 5.3864 -1.7091 1.2024 23 6 4.6391 -0.5485 1.2074 24 6 4.2357 0.0840 2.5144 25 8 4.7418 -0.6980 3.5981 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8901 29 1 0.2064 2.3109 0.0090 30 1 1.2937 4.4941 0.0001 31 1 6.6170 4.2548 -1.6530 32 1 5.1526 2.5765 -0.0094 33 1 5.6750 -2.1744 -2.1293 34 1 6.3416 -3.1997 0.0053 35 1 5.6822 -2.1633 2.1365 36 1 3.1484 0.1289 2.5760 37 1 4.6450 1.0926 2.5715 38 1 4.5200 -0.3489 4.4722 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243709727.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:03:40 Heat of formation + Delta-G solvation = -69.309164 kcal Electronic energy + Delta-G solvation = -24446.207174 eV Core-core repulsion = 20857.606297 eV Total energy + Delta-G solvation = -3588.600877 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.081 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.02304 -39.83079 -38.02994 -37.74663 -37.01825 -35.23229 -33.68845 -32.07406 -30.93481 -29.94752 -28.28587 -27.04940 -26.39266 -24.13761 -22.55035 -22.42611 -21.51062 -19.18473 -18.52214 -18.32493 -17.62036 -17.06010 -16.52886 -16.37925 -16.17173 -15.92640 -15.82493 -15.27931 -14.98302 -14.83842 -14.43878 -14.17697 -13.94101 -13.74623 -13.29885 -13.21724 -12.85048 -12.75180 -12.44487 -12.35252 -12.33797 -12.29696 -12.21942 -11.75964 -11.69576 -11.55765 -11.23322 -11.12658 -10.83400 -9.56598 -9.49618 -9.37578 -8.86304 -8.53741 -6.18242 0.29101 0.32148 0.89085 1.04921 1.34736 1.39482 1.49259 1.53242 2.23397 2.69277 2.71415 2.84784 3.24828 3.67124 3.82063 3.95292 4.11338 4.31630 4.39569 4.43398 4.48327 4.50452 4.51892 4.54819 4.65694 4.75577 4.88272 4.99962 5.09749 5.23963 5.29021 5.33698 5.43884 5.55616 5.57238 5.67749 5.87766 5.95721 6.07160 6.29527 6.60069 6.83863 6.84720 6.99396 7.11982 8.40165 Molecular weight = 318.08amu Principal moments of inertia in cm(-1) A = 0.010897 B = 0.005714 C = 0.005342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2568.823197 B = 4899.226200 C = 5240.205533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.337 6.337 3 C 0.023 3.977 4 C -0.171 4.171 5 C -0.200 4.200 6 C 0.057 3.943 7 C -0.499 4.499 8 H 0.074 0.926 9 C 0.037 3.963 10 N -0.823 5.823 11 Si 0.972 3.028 12 H -0.261 1.261 13 H -0.272 1.272 14 H -0.261 1.261 15 C -0.121 4.121 16 C -0.062 4.062 17 C -0.018 4.018 18 C -0.040 4.040 19 Cl -0.077 7.077 20 C -0.119 4.119 21 C -0.110 4.110 22 C -0.100 4.100 23 C -0.087 4.087 24 C 0.134 3.866 25 O -0.574 6.574 26 H 0.112 0.888 27 H 0.054 0.946 28 H 0.046 0.954 29 H 0.127 0.873 30 H 0.103 0.897 31 H 0.284 0.716 32 H 0.103 0.897 33 H 0.152 0.848 34 H 0.168 0.832 35 H 0.149 0.851 36 H 0.056 0.944 37 H 0.049 0.951 38 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.565 -10.352 4.558 11.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.253 6.253 3 C -0.021 4.021 4 C -0.189 4.189 5 C -0.219 4.219 6 C 0.055 3.945 7 C -0.528 4.528 8 H 0.092 0.908 9 C -0.177 4.177 10 N -0.449 5.449 11 Si 0.794 3.206 12 H -0.186 1.186 13 H -0.197 1.197 14 H -0.186 1.186 15 C -0.140 4.140 16 C -0.063 4.063 17 C -0.019 4.019 18 C -0.067 4.067 19 Cl -0.048 7.048 20 C -0.137 4.137 21 C -0.127 4.127 22 C -0.118 4.118 23 C -0.088 4.088 24 C 0.057 3.943 25 O -0.382 6.382 26 H 0.130 0.870 27 H 0.073 0.927 28 H 0.065 0.935 29 H 0.145 0.855 30 H 0.121 0.879 31 H 0.094 0.906 32 H 0.121 0.879 33 H 0.169 0.831 34 H 0.185 0.815 35 H 0.167 0.833 36 H 0.074 0.926 37 H 0.067 0.933 38 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges -1.106 -10.884 3.786 11.577 hybrid contribution -0.225 1.700 0.037 1.715 sum -1.331 -9.185 3.823 10.037 Atomic orbital electron populations 1.23056 0.78464 1.04142 1.01005 1.85867 1.21637 1.27208 1.90565 1.18580 0.90582 0.83902 1.09019 1.20621 0.98980 0.92053 1.07284 1.20786 0.94323 0.96290 1.10527 1.17784 0.91662 0.93682 0.91350 1.19603 1.00050 0.95076 1.38121 0.90765 1.26601 0.98574 1.00486 0.92044 1.69913 1.16850 1.35239 1.22924 0.85399 0.77336 0.78303 0.79579 1.18560 1.19683 1.18563 1.20973 0.98619 0.89913 1.04531 1.17746 0.89519 0.91774 1.07263 1.18474 0.97331 0.94515 0.91586 1.21182 1.02327 0.96791 0.86359 1.98347 1.91314 1.83632 1.31499 1.21269 0.97981 0.93746 1.00721 1.21460 0.99902 1.00929 0.90442 1.21181 0.96672 0.94281 0.99656 1.19875 0.99323 0.96716 0.92840 1.20523 0.97132 0.92534 0.84157 1.86303 1.79872 1.54255 1.17792 0.87003 0.92746 0.93509 0.85509 0.87927 0.90557 0.87909 0.83071 0.81453 0.83305 0.92586 0.93260 0.74871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.80 9.80 113.37 1.11 1.91 16 2 O -0.34 -13.22 9.93 -89.17 -0.89 -14.11 16 3 C 0.02 1.03 6.72 23.01 0.15 1.18 16 4 C -0.17 -7.36 8.95 22.06 0.20 -7.16 16 5 C -0.20 -9.59 9.72 22.50 0.22 -9.37 16 6 C 0.06 3.04 5.57 -21.31 -0.12 2.93 16 7 C -0.50 -26.62 9.03 23.40 0.21 -26.41 16 8 H 0.07 3.81 7.91 -2.91 -0.02 3.79 16 9 C 0.04 1.90 5.13 85.22 0.44 2.33 16 10 N -0.82 -43.60 10.96 21.81 0.24 -43.36 16 11 Si 0.97 38.72 29.60 68.60 2.03 40.75 16 12 H -0.26 -10.14 7.11 99.48 0.71 -9.43 16 13 H -0.27 -10.42 7.11 99.48 0.71 -9.71 16 14 H -0.26 -10.08 7.11 99.48 0.71 -9.37 16 15 C -0.12 -6.27 8.41 22.94 0.19 -6.08 16 16 C -0.06 -2.88 3.42 -19.98 -0.07 -2.95 16 17 C -0.02 -0.76 4.82 -20.03 -0.10 -0.86 16 18 C -0.04 -1.57 6.34 22.54 0.14 -1.42 16 19 Cl -0.08 -3.15 28.03 -2.72 -0.08 -3.23 16 20 C -0.12 -3.67 9.82 22.26 0.22 -3.45 16 21 C -0.11 -2.93 10.04 22.31 0.22 -2.70 16 22 C -0.10 -3.05 9.37 22.24 0.21 -2.85 16 23 C -0.09 -3.20 5.91 -19.65 -0.12 -3.32 16 24 C 0.13 4.50 6.46 71.24 0.46 4.96 16 25 O -0.57 -15.22 12.14 -148.98 -1.81 -17.02 16 26 H 0.11 2.47 8.14 -2.39 -0.02 2.45 16 27 H 0.05 1.41 7.64 -2.39 -0.02 1.39 16 28 H 0.05 1.29 7.66 -2.38 -0.02 1.27 16 29 H 0.13 4.58 6.26 -2.91 -0.02 4.56 16 30 H 0.10 4.62 8.06 -2.91 -0.02 4.60 16 31 H 0.28 13.91 8.30 -92.71 -0.77 13.14 16 32 H 0.10 5.76 6.17 -2.91 -0.02 5.75 16 33 H 0.15 3.81 8.06 -2.91 -0.02 3.78 16 34 H 0.17 3.00 8.06 -2.91 -0.02 2.98 16 35 H 0.15 3.99 7.00 -2.91 -0.02 3.97 16 36 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 37 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 38 H 0.40 6.61 9.12 -74.06 -0.68 5.93 16 Total: -1.00 -64.76 340.13 3.31 -61.45 By element: Atomic # 1 Polarization: 28.35 SS G_CDS: 0.43 Total: 28.78 kcal Atomic # 6 Polarization: -56.63 SS G_CDS: 3.38 Total: -53.25 kcal Atomic # 7 Polarization: -43.60 SS G_CDS: 0.24 Total: -43.36 kcal Atomic # 8 Polarization: -28.44 SS G_CDS: -2.69 Total: -31.13 kcal Atomic # 14 Polarization: 38.72 SS G_CDS: 2.03 Total: 40.75 kcal Atomic # 17 Polarization: -3.15 SS G_CDS: -0.08 Total: -3.23 kcal Total: -64.76 3.31 -61.45 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243709727.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.862 kcal (2) G-P(sol) polarization free energy of solvation -64.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.447 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds