Wall clock time and date at job start Tue Mar 31 2020 12:05:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35872 * 116.99813 * 2 1 4 4 C 1.39484 * 119.78129 * 0.28746 * 3 2 1 5 5 C 1.37934 * 120.62219 * 180.26273 * 4 3 2 6 6 C 1.39187 * 120.16089 * 359.45032 * 5 4 3 7 7 C 1.47816 * 120.21696 * 180.25239 * 6 5 4 8 8 C 1.39805 * 120.15744 * 269.71813 * 7 6 5 9 9 Cl 1.73605 * 120.09394 * 0.02664 * 8 7 6 10 10 C 1.38043 * 119.81750 * 179.79281 * 8 7 6 11 11 C 1.38388 * 120.13480 * 0.46395 * 10 8 7 12 12 C 1.38400 * 120.32001 * 359.79235 * 11 10 8 13 13 C 1.37929 * 120.18349 * 359.97286 * 12 11 10 14 14 C 1.50697 * 120.07196 * 180.02562 * 13 12 11 15 15 O 1.42895 * 109.46998 * 359.97438 * 14 13 12 16 16 C 1.41899 * 119.56060 * 0.27114 * 6 5 4 17 17 C 1.40885 * 120.30268 * 180.02562 * 16 6 5 18 18 H 1.07999 * 120.00344 * 24.96460 * 17 16 6 19 19 C 1.40047 * 120.00098 * 204.96954 * 17 16 6 20 20 N 1.30786 * 119.99940 * 17.49968 * 19 17 16 21 21 Si 1.86803 * 119.99971 * 197.49703 * 19 17 16 22 22 H 1.48501 * 109.47225 * 0.02562 * 21 19 17 23 23 H 1.48505 * 109.46864 * 119.99937 * 21 19 17 24 24 H 1.48495 * 109.47204 * 239.99912 * 21 19 17 25 25 C 1.37922 * 119.78146 * 179.97438 * 3 2 1 26 26 H 1.08999 * 109.47509 * 60.00541 * 1 2 3 27 27 H 1.09003 * 109.46750 * 180.02562 * 1 2 3 28 28 H 1.09008 * 109.47645 * 300.00334 * 1 2 3 29 29 H 1.08002 * 119.68650 * 359.97438 * 4 3 2 30 30 H 1.08000 * 119.91645 * 179.72027 * 5 4 3 31 31 H 1.08000 * 119.93289 * 180.21661 * 10 8 7 32 32 H 1.07995 * 119.83890 * 179.76353 * 11 10 8 33 33 H 1.08000 * 119.90790 * 179.97438 * 12 11 10 34 34 H 1.09009 * 109.47121 * 119.97847 * 14 13 12 35 35 H 1.08997 * 109.47227 * 239.97851 * 14 13 12 36 36 H 0.96706 * 114.00294 * 180.02562 * 15 14 13 37 37 H 0.96999 * 120.00125 * 179.97438 * 20 19 17 38 38 H 1.07996 * 120.08732 * 0.04238 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0458 1.2106 0.0000 4 6 1.2816 2.3775 0.0061 5 6 1.8896 3.6156 0.0007 6 6 3.2781 3.7128 0.0007 7 6 3.9310 5.0390 0.0006 8 6 4.2465 5.6664 -1.2082 9 17 3.8721 4.8905 -2.7154 10 6 4.8523 6.9068 -1.2002 11 6 5.1556 7.5241 0.0007 12 6 4.8505 6.9057 1.2008 13 6 4.2408 5.6685 1.2081 14 6 3.9093 4.9977 2.5162 15 8 4.3216 5.8347 3.5985 16 6 4.0626 2.5305 0.0004 17 6 5.4692 2.6106 0.0009 18 1 5.9600 3.4877 0.3963 19 6 6.2311 1.5531 -0.5113 20 7 5.6727 0.6610 -1.2878 21 14 8.0448 1.4167 -0.0856 22 1 8.4307 2.5420 0.8032 23 1 8.2944 0.1288 0.6104 24 1 8.8511 1.4704 -1.3315 25 6 3.4233 1.2776 0.0005 26 1 -0.3634 0.5137 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3635 0.5139 0.8900 29 1 0.2036 2.3109 0.0103 30 1 1.2868 4.5117 0.0010 31 1 5.0937 7.3947 -2.1329 32 1 5.6330 8.4928 0.0015 33 1 5.0905 7.3933 2.1341 34 1 2.8339 4.8296 2.5760 35 1 4.4304 4.0423 2.5769 36 1 4.1392 5.4649 4.4733 37 1 6.2005 -0.0713 -1.6429 38 1 4.0095 0.3706 0.0003 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243712749.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:05:21 Heat of formation + Delta-G solvation = -56.591083 kcal Electronic energy + Delta-G solvation = -24380.242891 eV Core-core repulsion = 20792.193511 eV Total energy + Delta-G solvation = -3588.049380 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.081 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -39.29703 -38.48183 -36.42442 -36.20981 -35.47730 -33.62605 -31.63975 -30.47299 -29.75466 -28.26137 -26.40498 -25.52741 -25.13194 -22.31868 -21.08427 -20.84831 -19.69207 -17.73803 -17.06155 -16.37889 -16.14969 -15.26569 -15.03731 -14.85180 -14.73681 -14.54064 -14.44133 -13.69891 -13.56974 -13.16531 -12.98161 -12.56432 -12.26176 -12.11496 -11.78195 -11.44699 -11.34153 -11.22806 -11.09426 -10.93458 -10.80621 -10.66975 -10.47611 -10.12340 -9.91892 -9.89642 -9.75738 -9.61100 -9.17614 -8.07618 -7.89435 -7.53663 -6.98398 -6.74509 -4.46741 1.76792 1.83689 2.70316 2.87460 2.94970 3.05715 3.11069 3.17541 3.89164 4.16860 4.29394 4.52477 4.54670 5.30321 5.35878 5.48771 5.56122 5.65023 5.71255 5.84869 5.88812 5.93165 5.94718 6.02143 6.09594 6.33324 6.38393 6.43152 6.80453 6.82625 6.86343 6.99484 7.10099 7.19814 7.34204 7.37861 7.66136 7.74376 7.88422 7.93380 7.99393 8.33164 8.70963 8.79506 8.87291 10.09107 Molecular weight = 318.08amu Principal moments of inertia in cm(-1) A = 0.009069 B = 0.006806 C = 0.005600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3086.553220 B = 4113.115924 C = 4998.434166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.330 6.330 3 C 0.135 3.865 4 C -0.319 4.319 5 C -0.034 4.034 6 C -0.211 4.211 7 C 0.042 3.958 8 C -0.023 4.023 9 Cl -0.064 7.064 10 C -0.121 4.121 11 C -0.133 4.133 12 C -0.101 4.101 13 C -0.079 4.079 14 C 0.124 3.876 15 O -0.577 6.577 16 C 0.165 3.835 17 C -0.444 4.444 18 H 0.081 0.919 19 C 0.080 3.920 20 N -0.773 5.773 21 Si 0.900 3.100 22 H -0.258 1.258 23 H -0.271 1.271 24 H -0.273 1.273 25 C -0.196 4.196 26 H 0.045 0.955 27 H 0.082 0.918 28 H 0.044 0.956 29 H 0.095 0.905 30 H 0.089 0.911 31 H 0.122 0.878 32 H 0.120 0.880 33 H 0.128 0.872 34 H 0.059 0.941 35 H 0.071 0.929 36 H 0.378 0.622 37 H 0.282 0.718 38 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.015 5.871 3.645 7.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.244 6.244 3 C 0.091 3.909 4 C -0.339 4.339 5 C -0.053 4.053 6 C -0.213 4.213 7 C 0.041 3.959 8 C -0.050 4.050 9 Cl -0.035 7.035 10 C -0.140 4.140 11 C -0.151 4.151 12 C -0.119 4.119 13 C -0.079 4.079 14 C 0.047 3.953 15 O -0.382 6.382 16 C 0.162 3.838 17 C -0.472 4.472 18 H 0.099 0.901 19 C -0.140 4.140 20 N -0.397 5.397 21 Si 0.725 3.275 22 H -0.181 1.181 23 H -0.196 1.196 24 H -0.198 1.198 25 C -0.216 4.216 26 H 0.063 0.937 27 H 0.100 0.900 28 H 0.063 0.937 29 H 0.113 0.887 30 H 0.107 0.893 31 H 0.140 0.860 32 H 0.138 0.862 33 H 0.146 0.854 34 H 0.077 0.923 35 H 0.089 0.911 36 H 0.224 0.776 37 H 0.093 0.907 38 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -2.719 5.778 2.850 6.993 hybrid contribution 0.339 -0.442 0.200 0.592 sum -2.380 5.337 3.050 6.591 Atomic orbital electron populations 1.22749 0.80800 1.01811 1.00501 1.86004 1.19482 1.29192 1.89759 1.18994 0.92443 0.82420 0.97003 1.20284 0.97226 0.92378 1.24026 1.20181 0.92951 0.95167 0.96958 1.18251 0.92020 0.90273 1.20722 1.18333 0.94703 0.93384 0.89470 1.21071 1.02600 0.93939 0.87400 1.98346 1.93071 1.81338 1.30736 1.20895 1.00277 0.94182 0.98603 1.20947 1.02176 1.00109 0.91859 1.20873 0.98251 0.94854 0.97971 1.19767 0.99983 0.94909 0.93241 1.20817 0.98559 0.92354 0.83563 1.86365 1.86062 1.48771 1.17007 1.17067 0.92458 0.88515 0.85770 1.19491 0.90980 1.02213 1.34523 0.90119 1.25934 1.01084 0.94429 0.92571 1.69831 1.38485 1.10628 1.20716 0.86364 0.82139 0.79497 0.79546 1.18148 1.19555 1.19813 1.20511 0.89322 0.99060 1.12747 0.93662 0.89980 0.93743 0.88692 0.89266 0.85958 0.86162 0.85394 0.92289 0.91119 0.77596 0.90660 0.85586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.59 9.80 101.05 0.99 1.58 16 2 O -0.33 -7.13 10.48 -19.34 -0.20 -7.33 16 3 C 0.14 3.18 6.67 -39.23 -0.26 2.92 16 4 C -0.32 -6.91 9.02 -39.23 -0.35 -7.26 16 5 C -0.03 -0.74 9.75 -39.34 -0.38 -1.12 16 6 C -0.21 -4.75 3.48 -104.23 -0.36 -5.11 16 7 C 0.04 0.87 4.02 -104.87 -0.42 0.45 16 8 C -0.02 -0.47 6.35 -39.07 -0.25 -0.71 16 9 Cl -0.06 -1.30 28.04 -51.86 -1.45 -2.76 16 10 C -0.12 -2.05 9.82 -39.60 -0.39 -2.44 16 11 C -0.13 -2.08 10.04 -39.47 -0.40 -2.48 16 12 C -0.10 -1.72 9.37 -39.63 -0.37 -2.10 16 13 C -0.08 -1.49 5.91 -104.21 -0.62 -2.10 16 14 C 0.12 2.12 6.46 36.00 0.23 2.35 16 15 O -0.58 -8.38 12.14 -35.23 -0.43 -8.81 16 16 C 0.16 4.10 5.59 -106.58 -0.60 3.51 16 17 C -0.44 -11.13 8.49 -37.90 -0.32 -11.45 16 18 H 0.08 2.03 7.26 -52.49 -0.38 1.65 16 19 C 0.08 1.95 5.14 -17.32 -0.09 1.86 16 20 N -0.77 -19.50 10.97 55.55 0.61 -18.89 16 21 Si 0.90 18.46 29.59 -169.99 -5.03 13.43 16 22 H -0.26 -5.29 7.11 56.52 0.40 -4.89 16 23 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 24 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 25 C -0.20 -5.02 8.61 -38.79 -0.33 -5.35 16 26 H 0.04 0.69 7.66 -51.93 -0.40 0.29 16 27 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 28 H 0.04 0.65 7.63 -51.92 -0.40 0.25 16 29 H 0.10 1.82 6.25 -52.49 -0.33 1.49 16 30 H 0.09 1.76 8.06 -52.49 -0.42 1.34 16 31 H 0.12 1.79 8.06 -52.49 -0.42 1.36 16 32 H 0.12 1.50 8.06 -52.49 -0.42 1.08 16 33 H 0.13 2.01 7.00 -52.49 -0.37 1.64 16 34 H 0.06 0.98 8.14 -51.92 -0.42 0.56 16 35 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 36 H 0.38 3.62 9.12 45.56 0.42 4.03 16 37 H 0.28 6.51 8.30 -40.82 -0.34 6.17 16 38 H 0.13 3.41 6.18 -52.49 -0.32 3.08 16 LS Contribution 339.08 15.07 5.11 5.11 Total: -1.00 -28.55 339.08 -8.77 -37.32 By element: Atomic # 1 Polarization: 12.84 SS G_CDS: -3.45 Total: 9.39 kcal Atomic # 6 Polarization: -23.54 SS G_CDS: -3.92 Total: -27.46 kcal Atomic # 7 Polarization: -19.50 SS G_CDS: 0.61 Total: -18.89 kcal Atomic # 8 Polarization: -15.51 SS G_CDS: -0.63 Total: -16.14 kcal Atomic # 14 Polarization: 18.46 SS G_CDS: -5.03 Total: 13.43 kcal Atomic # 17 Polarization: -1.30 SS G_CDS: -1.45 Total: -2.76 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -28.55 -8.77 -37.32 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243712749.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.270 kcal (2) G-P(sol) polarization free energy of solvation -28.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.321 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds