Wall clock time and date at job start Tue Mar 31 2020 12:05:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35872 * 116.99813 * 2 1 4 4 C 1.39484 * 119.78129 * 0.28746 * 3 2 1 5 5 C 1.37934 * 120.62219 * 180.26273 * 4 3 2 6 6 C 1.39187 * 120.16089 * 359.45032 * 5 4 3 7 7 C 1.47816 * 120.21696 * 180.25239 * 6 5 4 8 8 C 1.39805 * 120.15744 * 269.71813 * 7 6 5 9 9 Cl 1.73605 * 120.09394 * 0.02664 * 8 7 6 10 10 C 1.38043 * 119.81750 * 179.79281 * 8 7 6 11 11 C 1.38388 * 120.13480 * 0.46395 * 10 8 7 12 12 C 1.38400 * 120.32001 * 359.79235 * 11 10 8 13 13 C 1.37929 * 120.18349 * 359.97286 * 12 11 10 14 14 C 1.50697 * 120.07196 * 180.02562 * 13 12 11 15 15 O 1.42895 * 109.46998 * 359.97438 * 14 13 12 16 16 C 1.41899 * 119.56060 * 0.27114 * 6 5 4 17 17 C 1.40885 * 120.30268 * 180.02562 * 16 6 5 18 18 H 1.07999 * 120.00344 * 24.96460 * 17 16 6 19 19 C 1.40047 * 120.00098 * 204.96954 * 17 16 6 20 20 N 1.30786 * 119.99940 * 17.49968 * 19 17 16 21 21 Si 1.86803 * 119.99971 * 197.49703 * 19 17 16 22 22 H 1.48501 * 109.47225 * 0.02562 * 21 19 17 23 23 H 1.48505 * 109.46864 * 119.99937 * 21 19 17 24 24 H 1.48495 * 109.47204 * 239.99912 * 21 19 17 25 25 C 1.37922 * 119.78146 * 179.97438 * 3 2 1 26 26 H 1.08999 * 109.47509 * 60.00541 * 1 2 3 27 27 H 1.09003 * 109.46750 * 180.02562 * 1 2 3 28 28 H 1.09008 * 109.47645 * 300.00334 * 1 2 3 29 29 H 1.08002 * 119.68650 * 359.97438 * 4 3 2 30 30 H 1.08000 * 119.91645 * 179.72027 * 5 4 3 31 31 H 1.08000 * 119.93289 * 180.21661 * 10 8 7 32 32 H 1.07995 * 119.83890 * 179.76353 * 11 10 8 33 33 H 1.08000 * 119.90790 * 179.97438 * 12 11 10 34 34 H 1.09009 * 109.47121 * 119.97847 * 14 13 12 35 35 H 1.08997 * 109.47227 * 239.97851 * 14 13 12 36 36 H 0.96706 * 114.00294 * 180.02562 * 15 14 13 37 37 H 0.96999 * 120.00125 * 179.97438 * 20 19 17 38 38 H 1.07996 * 120.08732 * 0.04238 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0458 1.2106 0.0000 4 6 1.2816 2.3775 0.0061 5 6 1.8896 3.6156 0.0007 6 6 3.2781 3.7128 0.0007 7 6 3.9310 5.0390 0.0006 8 6 4.2465 5.6664 -1.2082 9 17 3.8721 4.8905 -2.7154 10 6 4.8523 6.9068 -1.2002 11 6 5.1556 7.5241 0.0007 12 6 4.8505 6.9057 1.2008 13 6 4.2408 5.6685 1.2081 14 6 3.9093 4.9977 2.5162 15 8 4.3216 5.8347 3.5985 16 6 4.0626 2.5305 0.0004 17 6 5.4692 2.6106 0.0009 18 1 5.9600 3.4877 0.3963 19 6 6.2311 1.5531 -0.5113 20 7 5.6727 0.6610 -1.2878 21 14 8.0448 1.4167 -0.0856 22 1 8.4307 2.5420 0.8032 23 1 8.2944 0.1288 0.6104 24 1 8.8511 1.4704 -1.3315 25 6 3.4233 1.2776 0.0005 26 1 -0.3634 0.5137 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3635 0.5139 0.8900 29 1 0.2036 2.3109 0.0103 30 1 1.2868 4.5117 0.0010 31 1 5.0937 7.3947 -2.1329 32 1 5.6330 8.4928 0.0015 33 1 5.0905 7.3933 2.1341 34 1 2.8339 4.8296 2.5760 35 1 4.4304 4.0423 2.5769 36 1 4.1392 5.4649 4.4733 37 1 6.2005 -0.0713 -1.6429 38 1 4.0095 0.3706 0.0003 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243712749.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:05:20 Heat of formation + Delta-G solvation = -72.728216 kcal Electronic energy + Delta-G solvation = -24380.942649 eV Core-core repulsion = 20792.193511 eV Total energy + Delta-G solvation = -3588.749139 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.081 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.82792 -40.03742 -37.93672 -37.64802 -36.92156 -35.41613 -33.10197 -31.88160 -31.54811 -29.81402 -27.86436 -27.02928 -26.74501 -23.82982 -22.82288 -22.28945 -21.26407 -19.48450 -18.30630 -17.93785 -17.75952 -16.90945 -16.51400 -16.39792 -16.32935 -15.91719 -15.77953 -15.20354 -14.90794 -14.79496 -14.56448 -14.20306 -13.77299 -13.50244 -13.45859 -13.05939 -12.83973 -12.77211 -12.66789 -12.38245 -12.25775 -12.20051 -12.03251 -11.76809 -11.52339 -11.37071 -11.29414 -11.15722 -10.95833 -9.46843 -9.36968 -9.33046 -8.76551 -8.51206 -6.33609 0.38408 0.43845 0.96521 1.09188 1.36297 1.46217 1.48785 1.50678 2.18837 2.70699 2.78963 2.80929 3.33707 3.67010 4.04503 4.06711 4.19646 4.33070 4.47013 4.48895 4.52117 4.56113 4.61131 4.62591 4.65817 4.75656 4.96376 5.07964 5.11309 5.17446 5.35501 5.43616 5.52438 5.56621 5.71484 5.89349 5.95304 6.04079 6.13656 6.19839 6.51098 6.90812 6.93204 6.96911 7.08269 8.31610 Molecular weight = 318.08amu Principal moments of inertia in cm(-1) A = 0.009069 B = 0.006806 C = 0.005600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3086.553220 B = 4113.115924 C = 4998.434166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.352 6.352 3 C 0.130 3.870 4 C -0.314 4.314 5 C -0.042 4.042 6 C -0.198 4.198 7 C 0.012 3.988 8 C -0.043 4.043 9 Cl -0.081 7.081 10 C -0.120 4.120 11 C -0.118 4.118 12 C -0.102 4.102 13 C -0.093 4.093 14 C 0.134 3.866 15 O -0.577 6.577 16 C 0.147 3.853 17 C -0.464 4.464 18 H 0.072 0.928 19 C 0.043 3.957 20 N -0.809 5.809 21 Si 0.963 3.037 22 H -0.258 1.258 23 H -0.264 1.264 24 H -0.268 1.268 25 C -0.230 4.230 26 H 0.051 0.949 27 H 0.114 0.886 28 H 0.058 0.942 29 H 0.123 0.877 30 H 0.110 0.890 31 H 0.147 0.853 32 H 0.162 0.838 33 H 0.145 0.855 34 H 0.060 0.940 35 H 0.048 0.952 36 H 0.399 0.601 37 H 0.287 0.713 38 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.173 7.892 4.393 9.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.267 6.267 3 C 0.086 3.914 4 C -0.334 4.334 5 C -0.060 4.060 6 C -0.200 4.200 7 C 0.011 3.989 8 C -0.070 4.070 9 Cl -0.052 7.052 10 C -0.139 4.139 11 C -0.135 4.135 12 C -0.120 4.120 13 C -0.093 4.093 14 C 0.057 3.943 15 O -0.385 6.385 16 C 0.145 3.855 17 C -0.493 4.493 18 H 0.090 0.910 19 C -0.174 4.174 20 N -0.434 5.434 21 Si 0.784 3.216 22 H -0.181 1.181 23 H -0.188 1.188 24 H -0.193 1.193 25 C -0.250 4.250 26 H 0.070 0.930 27 H 0.132 0.868 28 H 0.077 0.923 29 H 0.141 0.859 30 H 0.128 0.872 31 H 0.165 0.835 32 H 0.180 0.820 33 H 0.162 0.838 34 H 0.078 0.922 35 H 0.066 0.934 36 H 0.249 0.751 37 H 0.097 0.903 38 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -2.901 7.796 3.621 9.072 hybrid contribution 0.238 -0.994 0.026 1.022 sum -2.663 6.802 3.647 8.165 Atomic orbital electron populations 1.23120 0.77720 1.04403 1.01432 1.85968 1.22692 1.28531 1.89546 1.19085 0.92154 0.83756 0.96437 1.20577 0.98567 0.91681 1.22568 1.20494 0.93021 0.95996 0.96520 1.18416 0.92368 0.90655 1.18555 1.18366 0.96663 0.93117 0.90750 1.21294 1.04013 0.95178 0.86494 1.98332 1.93310 1.81879 1.31671 1.21227 0.99182 0.93066 1.00410 1.21407 1.00353 1.01190 0.90598 1.21145 0.97397 0.94100 0.99341 1.19979 1.00355 0.95860 0.93139 1.20542 0.98239 0.91513 0.84016 1.86304 1.85986 1.48393 1.17845 1.17283 0.92912 0.89181 0.86163 1.19518 0.91470 1.02531 1.35770 0.91008 1.26647 1.04861 0.93881 0.92051 1.69898 1.40067 1.11470 1.21938 0.85432 0.77318 0.79509 0.79296 1.18105 1.18830 1.19290 1.20460 0.90473 0.98580 1.15531 0.93016 0.86763 0.92326 0.85901 0.87220 0.83515 0.82020 0.83772 0.92177 0.93377 0.75052 0.90261 0.88212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.84 9.80 113.37 1.11 1.95 16 2 O -0.35 -15.32 10.48 -92.11 -0.97 -16.28 16 3 C 0.13 6.23 6.67 22.50 0.15 6.38 16 4 C -0.31 -13.41 9.02 22.50 0.20 -13.21 16 5 C -0.04 -1.80 9.75 22.43 0.22 -1.58 16 6 C -0.20 -9.06 3.48 -19.61 -0.07 -9.13 16 7 C 0.01 0.49 4.02 -20.02 -0.08 0.41 16 8 C -0.04 -1.69 6.35 22.60 0.14 -1.55 16 9 Cl -0.08 -3.31 28.04 -2.72 -0.08 -3.38 16 10 C -0.12 -3.80 9.82 22.26 0.22 -3.58 16 11 C -0.12 -3.26 10.04 22.34 0.22 -3.04 16 12 C -0.10 -3.19 9.37 22.24 0.21 -2.98 16 13 C -0.09 -3.42 5.91 -19.60 -0.12 -3.54 16 14 C 0.13 4.51 6.46 71.23 0.46 4.97 16 15 O -0.58 -15.66 12.14 -148.98 -1.81 -17.47 16 16 C 0.15 7.61 5.59 -21.14 -0.12 7.49 16 17 C -0.46 -24.19 8.49 23.36 0.20 -24.00 16 18 H 0.07 3.75 7.26 -2.91 -0.02 3.73 16 19 C 0.04 2.14 5.14 85.29 0.44 2.58 16 20 N -0.81 -42.70 10.97 21.84 0.24 -42.46 16 21 Si 0.96 38.77 29.59 68.60 2.03 40.80 16 22 H -0.26 -10.21 7.11 99.48 0.71 -9.50 16 23 H -0.26 -10.20 7.11 99.48 0.71 -9.50 16 24 H -0.27 -10.47 7.11 99.48 0.71 -9.76 16 25 C -0.23 -12.32 8.61 22.78 0.20 -12.12 16 26 H 0.05 1.48 7.66 -2.39 -0.02 1.46 16 27 H 0.11 2.66 8.14 -2.39 -0.02 2.64 16 28 H 0.06 1.59 7.63 -2.38 -0.02 1.57 16 29 H 0.12 4.45 6.25 -2.91 -0.02 4.44 16 30 H 0.11 4.18 8.06 -2.91 -0.02 4.16 16 31 H 0.15 3.84 8.06 -2.91 -0.02 3.81 16 32 H 0.16 3.15 8.06 -2.91 -0.02 3.13 16 33 H 0.14 4.03 7.00 -2.91 -0.02 4.01 16 34 H 0.06 1.97 8.14 -2.38 -0.02 1.95 16 35 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 36 H 0.40 6.84 9.12 -74.05 -0.68 6.16 16 37 H 0.29 13.81 8.30 -92.71 -0.77 13.04 16 38 H 0.10 5.77 6.18 -2.91 -0.02 5.75 16 Total: -1.00 -64.08 339.08 3.24 -60.84 By element: Atomic # 1 Polarization: 28.46 SS G_CDS: 0.43 Total: 28.89 kcal Atomic # 6 Polarization: -54.33 SS G_CDS: 3.39 Total: -50.94 kcal Atomic # 7 Polarization: -42.70 SS G_CDS: 0.24 Total: -42.46 kcal Atomic # 8 Polarization: -30.97 SS G_CDS: -2.77 Total: -33.75 kcal Atomic # 14 Polarization: 38.77 SS G_CDS: 2.03 Total: 40.80 kcal Atomic # 17 Polarization: -3.31 SS G_CDS: -0.08 Total: -3.38 kcal Total: -64.08 3.24 -60.84 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243712749.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.892 kcal (2) G-P(sol) polarization free energy of solvation -64.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.836 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds