Wall clock time and date at job start Tue Mar 31 2020 12:08:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35597 * 116.99766 * 2 1 4 4 N 1.32259 * 119.73572 * 359.97438 * 3 2 1 5 5 C 1.32106 * 121.99005 * 180.02562 * 4 3 2 6 6 C 1.37813 * 121.22837 * 0.02562 * 5 4 3 7 7 C 1.39506 * 119.31464 * 359.73921 * 6 5 4 8 8 S 1.76202 * 120.90764 * 180.25583 * 7 6 5 9 9 C 1.81404 * 102.99632 * 0.27461 * 8 7 6 10 10 C 1.39817 * 119.73355 * 180.02562 * 3 2 1 11 11 C 1.48035 * 120.62719 * 359.97438 * 10 3 2 12 12 C 1.39559 * 119.66647 * 310.31670 * 11 10 3 13 13 C 1.38152 * 119.13619 * 179.97438 * 12 11 10 14 14 C 1.39475 * 118.47594 * 359.97438 * 13 12 11 15 15 O 1.35728 * 120.37586 * 180.02562 * 14 13 12 16 16 C 1.34812 * 116.99973 * 5.64725 * 15 14 13 17 17 H 1.08006 * 119.99698 * 5.39473 * 16 15 14 18 18 C 1.38634 * 120.00269 * 185.40059 * 16 15 14 19 19 N 1.31570 * 119.99615 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 120.00162 * 180.02562 * 18 16 15 21 21 H 1.48504 * 109.47014 * 359.97438 * 20 18 16 22 22 H 1.48498 * 109.47231 * 119.99401 * 20 18 16 23 23 H 1.48495 * 109.47129 * 239.99885 * 20 18 16 24 24 C 1.38895 * 119.25108 * 0.02562 * 14 13 12 25 25 N 1.31715 * 120.80335 * 0.02562 * 24 14 13 26 26 H 1.08997 * 109.47193 * 299.99959 * 1 2 3 27 27 H 1.08998 * 109.47411 * 60.00215 * 1 2 3 28 28 H 1.08998 * 109.47041 * 180.02562 * 1 2 3 29 29 H 1.08007 * 119.38854 * 180.02562 * 5 4 3 30 30 H 1.08000 * 120.34781 * 179.97438 * 6 5 4 31 31 H 1.08995 * 109.46906 * 299.99378 * 9 8 7 32 32 H 1.08996 * 109.47435 * 60.00001 * 9 8 7 33 33 H 1.08998 * 109.46682 * 179.97438 * 9 8 7 34 34 H 1.08000 * 120.43305 * 359.97438 * 12 11 10 35 35 H 1.08006 * 120.75959 * 179.97438 * 13 12 11 36 36 H 0.96997 * 119.99867 * 179.97438 * 19 18 16 37 37 H 1.08003 * 119.59871 * 180.28010 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0446 1.2082 0.0000 4 7 1.3191 2.3141 -0.0005 5 6 1.8720 3.5138 -0.0010 6 6 3.2413 3.6695 -0.0016 7 6 4.0574 2.5380 0.0039 8 16 5.8130 2.6883 0.0102 9 6 6.0687 4.4842 0.0157 10 6 3.4411 1.2749 -0.0005 11 6 4.2552 0.0386 -0.0005 12 6 3.9802 -0.9696 0.9244 13 6 4.7464 -2.1191 0.9143 14 6 5.7707 -2.2273 -0.0262 15 8 6.5468 -3.3399 -0.0708 16 6 6.2046 -4.3579 0.7440 17 1 5.2981 -4.3006 1.3283 18 6 7.0163 -5.4783 0.8320 19 7 8.1204 -5.5483 0.1198 20 14 6.5417 -6.8893 1.9604 21 1 5.2643 -6.5668 2.6457 22 1 6.3753 -8.1289 1.1599 23 1 7.6083 -7.0934 2.9732 24 6 5.9874 -1.1836 -0.9167 25 7 5.2397 -0.0999 -0.8806 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.2392 4.3891 -0.0010 30 1 3.6782 4.6572 -0.0024 31 1 5.6143 4.9186 -0.8747 32 1 5.6082 4.9141 0.9052 33 1 7.1373 4.6990 0.0203 34 1 3.1787 -0.8528 1.6388 35 1 4.5567 -2.9157 1.6186 36 1 8.6885 -6.3320 0.1816 37 1 6.7761 -1.2634 -1.6502 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243714881.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:08:12 Heat of formation + Delta-G solvation = 13.514836 kcal Electronic energy + Delta-G solvation = -23403.892747 eV Core-core repulsion = 19853.219845 eV Total energy + Delta-G solvation = -3550.672902 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.082 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.58451 -39.34125 -37.76746 -37.13735 -33.00488 -32.35749 -31.57201 -31.15772 -28.92929 -28.47555 -27.20713 -25.67551 -23.77167 -23.21808 -22.42043 -21.27761 -18.74096 -18.14200 -17.26426 -17.13711 -16.24007 -16.11721 -15.90629 -15.31779 -14.86814 -14.54572 -14.28304 -13.97809 -13.88174 -13.62997 -13.50668 -13.39251 -13.27341 -12.71389 -12.55581 -12.36621 -12.08547 -11.80945 -11.75982 -11.29473 -11.19294 -11.12615 -10.54646 -10.45508 -10.31263 -9.80025 -9.58128 -9.07338 -8.90027 -8.75827 -8.45894 -7.59487 -7.14800 -6.59452 -4.16055 0.96686 1.18381 1.46479 2.08865 2.24640 2.47816 3.06286 3.07340 3.13188 3.20926 3.71999 3.85637 4.28720 4.53689 4.75251 4.93944 4.94500 4.95715 5.02314 5.06613 5.14780 5.28714 5.32444 5.42968 5.54022 5.58597 5.60999 5.74043 5.80836 5.92781 6.05960 6.21732 6.26459 6.62874 6.85215 7.04463 7.20473 7.30766 7.48432 7.83511 7.88104 8.77425 8.85669 9.50632 10.57137 Molecular weight = 318.08amu Principal moments of inertia in cm(-1) A = 0.016355 B = 0.003702 C = 0.003136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1711.590539 B = 7562.253855 C = 8926.942413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.293 6.293 3 C 0.341 3.659 4 N -0.548 5.548 5 C 0.146 3.854 6 C -0.228 4.228 7 C -0.009 4.009 8 S -0.024 6.024 9 C -0.174 4.174 10 C -0.056 4.056 11 C 0.046 3.954 12 C -0.077 4.077 13 C -0.203 4.203 14 C 0.112 3.888 15 O -0.161 6.161 16 C -0.392 4.392 17 H 0.094 0.906 18 C 0.042 3.958 19 N -0.853 5.853 20 Si 0.943 3.057 21 H -0.265 1.265 22 H -0.274 1.274 23 H -0.274 1.274 24 C 0.032 3.968 25 N -0.417 5.417 26 H 0.057 0.943 27 H 0.057 0.943 28 H 0.095 0.905 29 H 0.158 0.842 30 H 0.135 0.865 31 H 0.083 0.917 32 H 0.080 0.920 33 H 0.107 0.893 34 H 0.117 0.883 35 H 0.137 0.863 36 H 0.273 0.727 37 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.028 16.267 1.647 19.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.199 6.199 3 C 0.160 3.840 4 N -0.273 5.273 5 C -0.011 4.011 6 C -0.255 4.255 7 C -0.130 4.130 8 S 0.220 5.780 9 C -0.342 4.342 10 C -0.066 4.066 11 C -0.090 4.090 12 C -0.098 4.098 13 C -0.229 4.229 14 C 0.055 3.945 15 O -0.061 6.061 16 C -0.468 4.468 17 H 0.112 0.888 18 C -0.164 4.164 19 N -0.486 5.486 20 Si 0.768 3.232 21 H -0.189 1.189 22 H -0.199 1.199 23 H -0.200 1.200 24 C -0.132 4.132 25 N -0.127 5.127 26 H 0.075 0.925 27 H 0.075 0.925 28 H 0.113 0.887 29 H 0.175 0.825 30 H 0.153 0.847 31 H 0.102 0.898 32 H 0.099 0.901 33 H 0.126 0.874 34 H 0.135 0.865 35 H 0.155 0.845 36 H 0.083 0.917 37 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -9.296 15.539 0.903 18.130 hybrid contribution -0.872 -0.175 1.225 1.514 sum -10.168 15.364 2.128 18.546 Atomic orbital electron populations 1.22855 0.77658 1.02903 1.02127 1.86359 1.22337 1.23912 1.87268 1.19636 0.88014 0.84753 0.91565 1.67314 1.40372 0.98555 1.21068 1.22125 0.92178 0.93538 0.93251 1.21815 0.95047 0.97983 1.10696 1.22256 0.98735 0.94401 0.97632 1.86495 0.97475 1.04260 1.89723 1.23881 1.06680 0.98397 1.05282 1.17844 0.89464 0.91704 1.07626 1.18513 0.98111 0.93922 0.98477 1.21550 0.97943 0.92738 0.97535 1.21428 0.99320 0.99608 1.02564 1.20564 0.91188 0.88813 0.93983 1.83981 1.46582 1.19606 1.55950 1.21437 1.08570 0.93730 1.23081 0.88826 1.25349 0.94977 0.98393 0.97661 1.70049 1.11743 1.29472 1.37321 0.85607 0.78875 0.79673 0.79088 1.18946 1.19941 1.19959 1.21705 1.01723 0.89015 1.00729 1.67401 1.03104 1.22125 1.20026 0.92453 0.92467 0.88676 0.82492 0.84736 0.89847 0.90104 0.87407 0.86483 0.84519 0.91728 0.83004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.46 10.38 101.05 1.05 1.51 16 2 O -0.29 -4.69 8.79 -18.49 -0.16 -4.85 16 3 C 0.34 5.60 7.41 -16.78 -0.12 5.48 16 4 N -0.55 -7.84 9.20 -13.14 -0.12 -7.96 16 5 C 0.15 1.71 11.15 -17.59 -0.20 1.51 16 6 C -0.23 -2.73 9.42 -39.26 -0.37 -3.10 16 7 C -0.01 -0.13 6.18 -38.24 -0.24 -0.37 16 8 S -0.02 -0.34 20.67 -107.50 -2.22 -2.57 16 9 C -0.17 -1.56 9.19 101.05 0.93 -0.63 16 10 C -0.06 -0.99 5.63 -104.42 -0.59 -1.57 16 11 C 0.05 0.91 5.62 -82.95 -0.47 0.44 16 12 C -0.08 -1.54 8.81 -39.12 -0.34 -1.88 16 13 C -0.20 -4.43 9.21 -39.15 -0.36 -4.79 16 14 C 0.11 2.68 6.67 -38.88 -0.26 2.43 16 15 O -0.16 -4.43 9.76 0.17 0.00 -4.43 16 16 C -0.39 -10.57 9.46 30.88 0.29 -10.28 16 17 H 0.09 2.34 5.33 -52.48 -0.28 2.06 16 18 C 0.04 1.12 5.49 -17.52 -0.10 1.02 16 19 N -0.85 -24.12 13.67 55.48 0.76 -23.36 16 20 Si 0.94 19.80 29.55 -169.99 -5.02 14.78 16 21 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16 22 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 23 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 24 C 0.03 0.70 11.14 -17.36 -0.19 0.51 16 25 N -0.42 -8.79 8.93 -9.64 -0.09 -8.87 16 26 H 0.06 0.61 8.10 -51.93 -0.42 0.19 16 27 H 0.06 0.63 8.10 -51.93 -0.42 0.21 16 28 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 29 H 0.16 1.23 8.06 -52.48 -0.42 0.81 16 30 H 0.13 1.19 6.07 -52.49 -0.32 0.88 16 31 H 0.08 0.66 7.78 -51.93 -0.40 0.25 16 32 H 0.08 0.62 7.81 -51.93 -0.41 0.22 16 33 H 0.11 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.12 2.08 7.66 -52.49 -0.40 1.67 16 35 H 0.14 2.89 5.83 -52.48 -0.31 2.59 16 36 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 37 H 0.15 3.14 8.06 -52.48 -0.42 2.71 16 LS Contribution 335.07 15.07 5.05 5.05 Total: -1.00 -31.65 335.07 -6.55 -38.21 By element: Atomic # 1 Polarization: 7.52 SS G_CDS: -3.78 Total: 3.74 kcal Atomic # 6 Polarization: -8.77 SS G_CDS: -0.97 Total: -9.73 kcal Atomic # 7 Polarization: -40.74 SS G_CDS: 0.55 Total: -40.19 kcal Atomic # 8 Polarization: -9.12 SS G_CDS: -0.16 Total: -9.28 kcal Atomic # 14 Polarization: 19.80 SS G_CDS: -5.02 Total: 14.78 kcal Atomic # 16 Polarization: -0.34 SS G_CDS: -2.22 Total: -2.57 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -31.65 -6.55 -38.21 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243714881.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.720 kcal (2) G-P(sol) polarization free energy of solvation -31.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.206 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds