Wall clock time and date at job start Tue Mar 31 2020 12:08:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35597 * 116.99766 * 2 1 4 4 N 1.32259 * 119.73572 * 359.97438 * 3 2 1 5 5 C 1.32106 * 121.99005 * 180.02562 * 4 3 2 6 6 C 1.37813 * 121.22837 * 0.02562 * 5 4 3 7 7 C 1.39506 * 119.31464 * 359.73921 * 6 5 4 8 8 S 1.76202 * 120.90764 * 180.25583 * 7 6 5 9 9 C 1.81404 * 102.99632 * 0.27461 * 8 7 6 10 10 C 1.39817 * 119.73355 * 180.02562 * 3 2 1 11 11 C 1.48035 * 120.62719 * 359.97438 * 10 3 2 12 12 C 1.39559 * 119.66647 * 310.31670 * 11 10 3 13 13 C 1.38152 * 119.13619 * 179.97438 * 12 11 10 14 14 C 1.39475 * 118.47594 * 359.97438 * 13 12 11 15 15 O 1.35728 * 120.37586 * 180.02562 * 14 13 12 16 16 C 1.34812 * 116.99973 * 5.64725 * 15 14 13 17 17 H 1.08006 * 119.99698 * 5.39473 * 16 15 14 18 18 C 1.38634 * 120.00269 * 185.40059 * 16 15 14 19 19 N 1.31570 * 119.99615 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 120.00162 * 180.02562 * 18 16 15 21 21 H 1.48504 * 109.47014 * 359.97438 * 20 18 16 22 22 H 1.48498 * 109.47231 * 119.99401 * 20 18 16 23 23 H 1.48495 * 109.47129 * 239.99885 * 20 18 16 24 24 C 1.38895 * 119.25108 * 0.02562 * 14 13 12 25 25 N 1.31715 * 120.80335 * 0.02562 * 24 14 13 26 26 H 1.08997 * 109.47193 * 299.99959 * 1 2 3 27 27 H 1.08998 * 109.47411 * 60.00215 * 1 2 3 28 28 H 1.08998 * 109.47041 * 180.02562 * 1 2 3 29 29 H 1.08007 * 119.38854 * 180.02562 * 5 4 3 30 30 H 1.08000 * 120.34781 * 179.97438 * 6 5 4 31 31 H 1.08995 * 109.46906 * 299.99378 * 9 8 7 32 32 H 1.08996 * 109.47435 * 60.00001 * 9 8 7 33 33 H 1.08998 * 109.46682 * 179.97438 * 9 8 7 34 34 H 1.08000 * 120.43305 * 359.97438 * 12 11 10 35 35 H 1.08006 * 120.75959 * 179.97438 * 13 12 11 36 36 H 0.96997 * 119.99867 * 179.97438 * 19 18 16 37 37 H 1.08003 * 119.59871 * 180.28010 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0446 1.2082 0.0000 4 7 1.3191 2.3141 -0.0005 5 6 1.8720 3.5138 -0.0010 6 6 3.2413 3.6695 -0.0016 7 6 4.0574 2.5380 0.0039 8 16 5.8130 2.6883 0.0102 9 6 6.0687 4.4842 0.0157 10 6 3.4411 1.2749 -0.0005 11 6 4.2552 0.0386 -0.0005 12 6 3.9802 -0.9696 0.9244 13 6 4.7464 -2.1191 0.9143 14 6 5.7707 -2.2273 -0.0262 15 8 6.5468 -3.3399 -0.0708 16 6 6.2046 -4.3579 0.7440 17 1 5.2981 -4.3006 1.3283 18 6 7.0163 -5.4783 0.8320 19 7 8.1204 -5.5483 0.1198 20 14 6.5417 -6.8893 1.9604 21 1 5.2643 -6.5668 2.6457 22 1 6.3753 -8.1289 1.1599 23 1 7.6083 -7.0934 2.9732 24 6 5.9874 -1.1836 -0.9167 25 7 5.2397 -0.0999 -0.8806 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.2392 4.3891 -0.0010 30 1 3.6782 4.6572 -0.0024 31 1 5.6143 4.9186 -0.8747 32 1 5.6082 4.9141 0.9052 33 1 7.1373 4.6990 0.0203 34 1 3.1787 -0.8528 1.6388 35 1 4.5567 -2.9157 1.6186 36 1 8.6885 -6.3320 0.1816 37 1 6.7761 -1.2634 -1.6502 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243714881.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:08:11 Heat of formation + Delta-G solvation = -8.241453 kcal Electronic energy + Delta-G solvation = -23404.836170 eV Core-core repulsion = 19853.219845 eV Total energy + Delta-G solvation = -3551.616325 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.082 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.81226 -40.99318 -39.00204 -38.77269 -34.57600 -33.95118 -33.05470 -32.52807 -30.02620 -29.67608 -28.18093 -27.52940 -25.15133 -24.58060 -23.86864 -22.80947 -20.04961 -19.78221 -19.01380 -18.34477 -17.55926 -17.33479 -17.13538 -16.81690 -16.28480 -15.97782 -15.82008 -15.39528 -15.11193 -14.96012 -14.75984 -14.42321 -14.24484 -14.17556 -13.99411 -13.77108 -13.60474 -13.32745 -12.94351 -12.76869 -12.57247 -12.22974 -12.11607 -11.71664 -11.56914 -11.30376 -10.95861 -10.67888 -10.54760 -10.42000 -9.76247 -9.03504 -8.53023 -8.50612 -6.20310 -0.24697 0.10737 0.33719 0.49527 0.62104 1.36053 1.44101 1.53653 1.54480 2.13861 2.15448 2.59749 2.80716 3.08688 3.17184 3.36638 3.55255 3.80783 3.98995 4.05621 4.13950 4.25996 4.32489 4.33303 4.37105 4.44220 4.45998 4.52450 4.70325 4.77306 4.82845 4.90390 4.98042 5.02147 5.25418 5.33596 5.40881 5.74894 5.92315 6.24481 6.80798 6.89984 7.07327 7.63229 8.69012 Molecular weight = 318.08amu Principal moments of inertia in cm(-1) A = 0.016355 B = 0.003702 C = 0.003136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1711.590539 B = 7562.253855 C = 8926.942413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.318 6.318 3 C 0.336 3.664 4 N -0.553 5.553 5 C 0.160 3.840 6 C -0.220 4.220 7 C -0.004 4.004 8 S -0.104 6.104 9 C -0.151 4.151 10 C -0.108 4.108 11 C 0.073 3.927 12 C -0.081 4.081 13 C -0.197 4.197 14 C 0.084 3.916 15 O -0.209 6.209 16 C -0.417 4.417 17 H 0.104 0.896 18 C -0.015 4.015 19 N -0.911 5.911 20 Si 1.019 2.981 21 H -0.250 1.250 22 H -0.268 1.268 23 H -0.267 1.267 24 C 0.026 3.974 25 N -0.422 5.422 26 H 0.066 0.934 27 H 0.060 0.940 28 H 0.113 0.887 29 H 0.206 0.794 30 H 0.173 0.827 31 H 0.101 0.899 32 H 0.101 0.899 33 H 0.122 0.878 34 H 0.141 0.859 35 H 0.141 0.859 36 H 0.276 0.724 37 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.697 19.570 2.706 23.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.225 6.225 3 C 0.156 3.844 4 N -0.278 5.278 5 C 0.003 3.997 6 C -0.247 4.247 7 C -0.126 4.126 8 S 0.140 5.860 9 C -0.319 4.319 10 C -0.118 4.118 11 C -0.065 4.065 12 C -0.101 4.101 13 C -0.223 4.223 14 C 0.030 3.970 15 O -0.113 6.113 16 C -0.493 4.493 17 H 0.121 0.879 18 C -0.214 4.214 19 N -0.547 5.547 20 Si 0.838 3.162 21 H -0.174 1.174 22 H -0.192 1.192 23 H -0.192 1.192 24 C -0.136 4.136 25 N -0.132 5.132 26 H 0.085 0.915 27 H 0.079 0.921 28 H 0.132 0.868 29 H 0.223 0.777 30 H 0.191 0.809 31 H 0.120 0.880 32 H 0.120 0.880 33 H 0.140 0.860 34 H 0.159 0.841 35 H 0.158 0.842 36 H 0.085 0.915 37 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -11.986 18.877 1.946 22.445 hybrid contribution -0.281 -0.636 0.838 1.089 sum -12.267 18.241 2.784 22.158 Atomic orbital electron populations 1.23089 0.75584 1.04413 1.02714 1.86311 1.24551 1.24381 1.87228 1.19673 0.87658 0.85548 0.91504 1.67459 1.40098 0.98854 1.21438 1.23022 0.92836 0.93967 0.89855 1.22262 0.94938 0.98492 1.08960 1.22388 0.98727 0.94626 0.96811 1.86752 0.98510 1.10997 1.89740 1.23949 1.08068 0.92747 1.07120 1.17894 0.90074 0.91499 1.12328 1.19105 0.96423 0.94658 0.96267 1.21802 0.98223 0.92037 0.98071 1.21586 0.98602 1.00350 1.01803 1.20897 0.91944 0.88871 0.95326 1.83963 1.48508 1.20916 1.57886 1.21898 1.09454 0.94430 1.23529 0.87854 1.26600 0.94694 1.00999 0.99155 1.70181 1.13602 1.30834 1.40121 0.84521 0.79140 0.75659 0.76861 1.17364 1.19246 1.19221 1.21860 1.02123 0.89013 1.00555 1.67548 1.03628 1.21340 1.20636 0.91505 0.92116 0.86840 0.77733 0.80942 0.88042 0.88025 0.85965 0.84096 0.84179 0.91494 0.82692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.77 10.38 113.37 1.18 1.95 16 2 O -0.32 -9.77 8.79 -89.07 -0.78 -10.55 16 3 C 0.34 10.41 7.41 85.01 0.63 11.04 16 4 N -0.55 -13.93 9.20 -308.40 -2.84 -16.77 16 5 C 0.16 2.94 11.15 84.55 0.94 3.88 16 6 C -0.22 -4.26 9.42 22.48 0.21 -4.04 16 7 C 0.00 -0.11 6.18 23.14 0.14 0.03 16 8 S -0.10 -2.90 20.67 -56.49 -1.17 -4.06 16 9 C -0.15 -2.12 9.19 113.37 1.04 -1.08 16 10 C -0.11 -3.67 5.63 -19.74 -0.11 -3.78 16 11 C 0.07 2.93 5.62 41.92 0.24 3.16 16 12 C -0.08 -3.25 8.81 22.57 0.20 -3.05 16 13 C -0.20 -8.87 9.21 22.55 0.21 -8.67 16 14 C 0.08 4.25 6.67 22.73 0.15 4.40 16 15 O -0.21 -12.32 9.76 -22.32 -0.22 -12.54 16 16 C -0.42 -23.67 9.46 67.91 0.64 -23.03 16 17 H 0.10 5.37 5.33 -2.91 -0.02 5.35 16 18 C -0.02 -0.85 5.49 84.83 0.47 -0.38 16 19 N -0.91 -54.41 13.67 21.61 0.30 -54.11 16 20 Si 1.02 41.61 29.55 68.60 2.03 43.64 16 21 H -0.25 -9.44 7.11 99.48 0.71 -8.73 16 22 H -0.27 -10.50 7.11 99.48 0.71 -9.80 16 23 H -0.27 -10.47 7.11 99.48 0.71 -9.77 16 24 C 0.03 1.20 11.14 84.87 0.95 2.14 16 25 N -0.42 -18.24 8.93 -184.42 -1.65 -19.89 16 26 H 0.07 1.27 8.10 -2.39 -0.02 1.25 16 27 H 0.06 1.22 8.10 -2.39 -0.02 1.20 16 28 H 0.11 1.91 8.14 -2.39 -0.02 1.89 16 29 H 0.21 1.78 8.06 -2.91 -0.02 1.76 16 30 H 0.17 1.98 6.07 -2.91 -0.02 1.96 16 31 H 0.10 1.11 7.78 -2.39 -0.02 1.09 16 32 H 0.10 1.06 7.81 -2.39 -0.02 1.04 16 33 H 0.12 1.43 8.14 -2.39 -0.02 1.41 16 34 H 0.14 4.89 7.66 -2.91 -0.02 4.87 16 35 H 0.14 6.11 5.83 -2.91 -0.02 6.09 16 36 H 0.28 15.01 8.31 -92.71 -0.77 14.24 16 37 H 0.16 6.90 8.06 -2.91 -0.02 6.87 16 Total: -1.00 -74.62 335.07 3.67 -70.95 By element: Atomic # 1 Polarization: 19.63 SS G_CDS: 1.12 Total: 20.74 kcal Atomic # 6 Polarization: -24.29 SS G_CDS: 6.88 Total: -17.41 kcal Atomic # 7 Polarization: -86.58 SS G_CDS: -4.19 Total: -90.77 kcal Atomic # 8 Polarization: -22.09 SS G_CDS: -1.00 Total: -23.09 kcal Atomic # 14 Polarization: 41.61 SS G_CDS: 2.03 Total: 43.64 kcal Atomic # 16 Polarization: -2.90 SS G_CDS: -1.17 Total: -4.06 kcal Total: -74.62 3.67 -70.95 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243714881.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.710 kcal (2) G-P(sol) polarization free energy of solvation -74.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.952 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds