Wall clock time and date at job start Tue Mar 31 2020 12:05:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35671 * 116.99802 * 2 1 4 4 C 1.37981 * 120.19831 * 0.28471 * 3 2 1 5 5 C 1.39624 * 119.93518 * 180.25612 * 4 3 2 6 6 C 1.48023 * 119.83955 * 179.73747 * 5 4 3 7 7 C 1.39601 * 120.13432 * 180.02562 * 6 5 4 8 8 C 1.37937 * 119.88200 * 179.97438 * 7 6 5 9 9 C 1.38383 * 120.15608 * 359.97438 * 8 7 6 10 10 C 1.50698 * 119.86314 * 180.02562 * 9 8 7 11 11 O 1.42905 * 109.47105 * 359.97438 * 10 9 8 12 12 C 1.38479 * 120.27434 * 359.97438 * 9 8 7 13 13 Cl 1.73593 * 119.94141 * 180.02562 * 12 9 8 14 14 C 1.38088 * 120.11235 * 359.79293 * 12 9 8 15 15 C 1.40071 * 120.32235 * 359.75765 * 5 4 3 16 16 C 1.36117 * 120.39564 * 359.95629 * 15 5 4 17 17 C 1.40910 * 120.06022 * 0.02562 * 16 15 5 18 18 C 1.40835 * 120.16098 * 180.02562 * 17 16 15 19 19 H 1.07999 * 120.00127 * 154.56101 * 18 17 16 20 20 C 1.39997 * 119.99943 * 334.55342 * 18 17 16 21 21 N 1.30833 * 120.00247 * 334.52456 * 20 18 17 22 22 Si 1.86804 * 119.99974 * 154.52421 * 20 18 17 23 23 H 1.48501 * 109.47344 * 179.97438 * 22 20 18 24 24 H 1.48496 * 109.47106 * 299.99997 * 22 20 18 25 25 H 1.48500 * 109.46885 * 59.99944 * 22 20 18 26 26 H 1.08999 * 109.46967 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47190 * 299.99787 * 1 2 3 28 28 H 1.08994 * 109.47251 * 59.99527 * 1 2 3 29 29 H 1.08007 * 120.03387 * 359.96601 * 4 3 2 30 30 H 1.08000 * 120.06222 * 359.94891 * 7 6 5 31 31 H 1.07996 * 119.92279 * 179.97438 * 8 7 6 32 32 H 1.09001 * 109.47078 * 119.99759 * 10 9 8 33 33 H 1.08996 * 109.46928 * 239.99748 * 10 9 8 34 34 H 0.96700 * 113.99774 * 179.97438 * 11 10 9 35 35 H 1.08004 * 120.07346 * 180.23046 * 14 12 9 36 36 H 1.07999 * 119.80581 * 179.97438 * 15 5 4 37 37 H 1.08001 * 119.96792 * 180.02562 * 16 15 5 38 38 H 0.97001 * 120.00231 * 354.15847 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2089 0.0000 4 6 1.2974 2.3686 0.0059 5 6 1.9369 3.6098 0.0005 6 6 1.1329 4.8526 0.0010 7 6 1.7659 6.0968 -0.0050 8 6 1.0115 7.2517 -0.0050 9 6 -0.3704 7.1793 0.0003 10 6 -1.1881 8.4452 -0.0004 11 8 -0.3148 9.5764 -0.0063 12 6 -1.0050 5.9485 0.0051 13 17 -2.7391 5.8679 0.0111 14 6 -0.2609 4.7853 0.0004 15 6 3.3356 3.6846 -0.0059 16 6 4.0861 2.5490 -0.0059 17 6 3.4577 1.2878 -0.0001 18 6 4.2321 0.1114 0.0004 19 1 3.8250 -0.8029 0.4062 20 6 5.5296 0.1273 -0.5252 21 7 5.8572 1.0115 -1.4321 22 14 6.7930 -1.1141 0.0683 23 1 8.0792 -0.8880 -0.6387 24 1 6.9963 -0.9530 1.5304 25 1 6.3077 -2.4886 -0.2155 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 0.2186 2.3164 0.0100 30 1 2.8443 6.1552 -0.0091 31 1 1.5006 8.2146 -0.0092 32 1 -1.8201 8.4690 -0.8881 33 1 -1.8135 8.4741 0.8918 34 1 -0.7737 10.4275 -0.0074 35 1 -0.7565 3.8258 0.0004 36 1 3.8216 4.6491 -0.0105 37 1 5.1641 2.6147 -0.0104 38 1 5.1810 1.6004 -1.8021 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243821065.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:05:26 Heat of formation + Delta-G solvation = -62.544583 kcal Electronic energy + Delta-G solvation = -23175.163294 eV Core-core repulsion = 19586.855751 eV Total energy + Delta-G solvation = -3588.307543 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.081 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -39.52113 -38.69333 -36.90510 -36.51818 -36.08132 -34.25630 -31.77476 -30.65233 -29.39509 -28.93861 -26.66458 -26.41076 -24.24371 -22.69981 -21.82001 -20.46496 -20.15498 -18.32404 -17.49580 -17.11583 -15.92195 -15.43594 -15.13549 -15.12851 -14.83156 -14.58907 -14.43963 -14.11102 -13.74017 -13.45920 -13.08355 -12.99890 -12.70584 -12.22105 -12.17941 -11.83616 -11.50370 -11.38211 -11.17561 -11.15273 -11.02224 -10.77329 -10.51120 -10.50696 -10.43645 -10.12427 -9.96929 -9.67137 -9.22220 -8.65335 -8.49641 -7.61276 -7.47109 -7.11248 -4.48373 1.23927 1.56682 2.24584 2.62408 2.76129 3.07261 3.15298 3.27866 3.87164 3.97625 4.06432 4.31457 4.49353 4.94242 5.14599 5.20893 5.28587 5.37060 5.44161 5.59116 5.64697 5.69783 5.75396 5.83257 5.91557 5.97386 6.21135 6.27118 6.47822 6.53677 6.63749 6.79349 6.89023 7.02871 7.14029 7.25829 7.46502 7.50092 7.56527 7.75323 7.86419 8.01692 8.16897 8.56391 8.76497 9.79623 Molecular weight = 318.08amu Principal moments of inertia in cm(-1) A = 0.020149 B = 0.003252 C = 0.002833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1389.315879 B = 8608.980043 C = 9880.850560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.312 6.312 3 C 0.008 3.992 4 C -0.140 4.140 5 C -0.195 4.195 6 C 0.040 3.960 7 C -0.144 4.144 8 C -0.071 4.071 9 C -0.133 4.133 10 C 0.127 3.873 11 O -0.569 6.569 12 C -0.014 4.014 13 Cl -0.088 7.088 14 C -0.140 4.140 15 C -0.067 4.067 16 C -0.215 4.215 17 C 0.092 3.908 18 C -0.473 4.473 19 H 0.087 0.913 20 C 0.033 3.967 21 N -0.776 5.776 22 Si 1.068 2.932 23 H -0.271 1.271 24 H -0.272 1.272 25 H -0.273 1.273 26 H 0.084 0.916 27 H 0.041 0.959 28 H 0.041 0.959 29 H 0.103 0.897 30 H 0.127 0.873 31 H 0.133 0.867 32 H 0.056 0.944 33 H 0.056 0.944 34 H 0.379 0.621 35 H 0.128 0.872 36 H 0.098 0.902 37 H 0.114 0.886 38 H 0.303 0.697 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.880 8.514 1.875 13.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.226 6.226 3 C -0.036 4.036 4 C -0.159 4.159 5 C -0.196 4.196 6 C 0.039 3.961 7 C -0.162 4.162 8 C -0.089 4.089 9 C -0.134 4.134 10 C 0.050 3.950 11 O -0.374 6.374 12 C -0.040 4.040 13 Cl -0.060 7.060 14 C -0.159 4.159 15 C -0.085 4.085 16 C -0.234 4.234 17 C 0.089 3.911 18 C -0.499 4.499 19 H 0.105 0.895 20 C -0.191 4.191 21 N -0.397 5.397 22 Si 0.890 3.110 23 H -0.196 1.196 24 H -0.197 1.197 25 H -0.198 1.198 26 H 0.102 0.898 27 H 0.059 0.941 28 H 0.060 0.940 29 H 0.121 0.879 30 H 0.145 0.855 31 H 0.151 0.849 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.226 0.774 35 H 0.145 0.855 36 H 0.116 0.884 37 H 0.132 0.868 38 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -7.877 7.421 1.664 10.949 hybrid contribution -2.695 1.077 0.107 2.904 sum -10.571 8.498 1.771 13.679 Atomic orbital electron populations 1.22769 0.81397 1.02039 1.00067 1.85965 1.18471 1.27887 1.90311 1.18956 0.92057 0.82818 1.09806 1.20700 0.97501 0.91966 1.05752 1.17610 0.92166 0.89859 1.19996 1.18863 0.91415 0.93283 0.92490 1.21337 1.00290 0.91469 1.03118 1.20754 0.92080 0.98657 0.97437 1.19229 0.94417 0.91822 1.07978 1.20758 0.90471 0.83771 1.00025 1.86449 1.36836 1.16319 1.97780 1.20437 0.83040 0.94302 1.06215 1.98323 1.11822 1.98766 1.97061 1.20935 0.93380 0.96512 1.05049 1.20396 0.92464 0.97177 0.98462 1.20585 0.98914 0.91192 1.12750 1.17210 0.88209 0.93793 0.91918 1.20684 0.99227 0.97542 1.32435 0.89486 1.27255 0.99221 0.99378 0.93212 1.70461 1.40102 1.13360 1.15803 0.83591 0.75210 0.74855 0.77340 1.19601 1.19684 1.19809 0.89758 0.94080 0.94027 0.87932 0.85515 0.84910 0.92587 0.92601 0.77374 0.85450 0.88408 0.86774 0.88275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.55 9.81 101.05 0.99 1.55 16 2 O -0.31 -6.98 9.78 -18.72 -0.18 -7.16 16 3 C 0.01 0.18 6.71 -38.43 -0.26 -0.08 16 4 C -0.14 -3.05 8.40 -39.16 -0.33 -3.38 16 5 C -0.19 -4.19 5.89 -104.68 -0.62 -4.80 16 6 C 0.04 0.76 5.88 -104.89 -0.62 0.14 16 7 C -0.14 -2.48 9.43 -39.18 -0.37 -2.85 16 8 C -0.07 -1.12 9.36 -39.64 -0.37 -1.49 16 9 C -0.13 -2.01 5.89 -104.48 -0.62 -2.62 16 10 C 0.13 1.49 6.39 36.00 0.23 1.72 16 11 O -0.57 -6.17 12.12 -35.23 -0.43 -6.60 16 12 C -0.01 -0.21 6.31 -39.55 -0.25 -0.46 16 13 Cl -0.09 -1.17 27.96 -51.86 -1.45 -2.62 16 14 C -0.14 -2.44 9.20 -39.15 -0.36 -2.80 16 15 C -0.07 -1.46 9.35 -39.66 -0.37 -1.83 16 16 C -0.22 -5.18 7.87 -39.33 -0.31 -5.49 16 17 C 0.09 2.35 5.31 -106.66 -0.57 1.78 16 18 C -0.47 -12.03 8.63 -37.94 -0.33 -12.36 16 19 H 0.09 2.21 7.71 -52.49 -0.40 1.81 16 20 C 0.03 0.79 4.93 -17.32 -0.09 0.71 16 21 N -0.78 -19.37 12.30 55.55 0.68 -18.69 16 22 Si 1.07 20.32 30.00 -169.99 -5.10 15.22 16 23 H -0.27 -5.12 7.11 56.52 0.40 -4.72 16 24 H -0.27 -5.00 7.11 56.52 0.40 -4.59 16 25 H -0.27 -4.96 7.11 56.52 0.40 -4.56 16 26 H 0.08 1.15 8.14 -51.93 -0.42 0.72 16 27 H 0.04 0.64 7.65 -51.93 -0.40 0.24 16 28 H 0.04 0.65 7.67 -51.93 -0.40 0.25 16 29 H 0.10 1.98 4.41 -52.48 -0.23 1.75 16 30 H 0.13 2.05 6.18 -52.49 -0.32 1.73 16 31 H 0.13 1.92 6.99 -52.49 -0.37 1.55 16 32 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 34 H 0.38 2.12 9.12 45.56 0.42 2.53 16 35 H 0.13 2.14 6.18 -52.48 -0.32 1.81 16 36 H 0.10 1.90 6.16 -52.49 -0.32 1.58 16 37 H 0.11 2.79 6.47 -52.49 -0.34 2.45 16 38 H 0.30 7.79 6.69 -40.82 -0.27 7.51 16 LS Contribution 332.50 15.07 5.01 5.01 Total: -1.00 -27.96 332.50 -8.72 -36.69 By element: Atomic # 1 Polarization: 13.45 SS G_CDS: -3.03 Total: 10.42 kcal Atomic # 6 Polarization: -28.04 SS G_CDS: -4.22 Total: -32.26 kcal Atomic # 7 Polarization: -19.37 SS G_CDS: 0.68 Total: -18.69 kcal Atomic # 8 Polarization: -13.15 SS G_CDS: -0.61 Total: -13.76 kcal Atomic # 14 Polarization: 20.32 SS G_CDS: -5.10 Total: 15.22 kcal Atomic # 17 Polarization: -1.17 SS G_CDS: -1.45 Total: -2.62 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -27.96 -8.72 -36.69 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243821065.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.859 kcal (2) G-P(sol) polarization free energy of solvation -27.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.686 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds