Wall clock time and date at job start Tue Mar 31 2020 12:05:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35671 * 116.99802 * 2 1 4 4 C 1.37981 * 120.19831 * 0.28471 * 3 2 1 5 5 C 1.39624 * 119.93518 * 180.25612 * 4 3 2 6 6 C 1.48023 * 119.83955 * 179.73747 * 5 4 3 7 7 C 1.39601 * 120.13432 * 180.02562 * 6 5 4 8 8 C 1.37937 * 119.88200 * 179.97438 * 7 6 5 9 9 C 1.38383 * 120.15608 * 359.97438 * 8 7 6 10 10 C 1.50698 * 119.86314 * 180.02562 * 9 8 7 11 11 O 1.42905 * 109.47105 * 359.97438 * 10 9 8 12 12 C 1.38479 * 120.27434 * 359.97438 * 9 8 7 13 13 Cl 1.73593 * 119.94141 * 180.02562 * 12 9 8 14 14 C 1.38088 * 120.11235 * 359.79293 * 12 9 8 15 15 C 1.40071 * 120.32235 * 359.75765 * 5 4 3 16 16 C 1.36117 * 120.39564 * 359.95629 * 15 5 4 17 17 C 1.40910 * 120.06022 * 0.02562 * 16 15 5 18 18 C 1.40835 * 120.16098 * 180.02562 * 17 16 15 19 19 H 1.07999 * 120.00127 * 154.56101 * 18 17 16 20 20 C 1.39997 * 119.99943 * 334.55342 * 18 17 16 21 21 N 1.30833 * 120.00247 * 334.52456 * 20 18 17 22 22 Si 1.86804 * 119.99974 * 154.52421 * 20 18 17 23 23 H 1.48501 * 109.47344 * 179.97438 * 22 20 18 24 24 H 1.48496 * 109.47106 * 299.99997 * 22 20 18 25 25 H 1.48500 * 109.46885 * 59.99944 * 22 20 18 26 26 H 1.08999 * 109.46967 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47190 * 299.99787 * 1 2 3 28 28 H 1.08994 * 109.47251 * 59.99527 * 1 2 3 29 29 H 1.08007 * 120.03387 * 359.96601 * 4 3 2 30 30 H 1.08000 * 120.06222 * 359.94891 * 7 6 5 31 31 H 1.07996 * 119.92279 * 179.97438 * 8 7 6 32 32 H 1.09001 * 109.47078 * 119.99759 * 10 9 8 33 33 H 1.08996 * 109.46928 * 239.99748 * 10 9 8 34 34 H 0.96700 * 113.99774 * 179.97438 * 11 10 9 35 35 H 1.08004 * 120.07346 * 180.23046 * 14 12 9 36 36 H 1.07999 * 119.80581 * 179.97438 * 15 5 4 37 37 H 1.08001 * 119.96792 * 180.02562 * 16 15 5 38 38 H 0.97001 * 120.00231 * 354.15847 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2089 0.0000 4 6 1.2974 2.3686 0.0059 5 6 1.9369 3.6098 0.0005 6 6 1.1329 4.8526 0.0010 7 6 1.7659 6.0968 -0.0050 8 6 1.0115 7.2517 -0.0050 9 6 -0.3704 7.1793 0.0003 10 6 -1.1881 8.4452 -0.0004 11 8 -0.3148 9.5764 -0.0063 12 6 -1.0050 5.9485 0.0051 13 17 -2.7391 5.8679 0.0111 14 6 -0.2609 4.7853 0.0004 15 6 3.3356 3.6846 -0.0059 16 6 4.0861 2.5490 -0.0059 17 6 3.4577 1.2878 -0.0001 18 6 4.2321 0.1114 0.0004 19 1 3.8250 -0.8029 0.4062 20 6 5.5296 0.1273 -0.5252 21 7 5.8572 1.0115 -1.4321 22 14 6.7930 -1.1141 0.0683 23 1 8.0792 -0.8880 -0.6387 24 1 6.9963 -0.9530 1.5304 25 1 6.3077 -2.4886 -0.2155 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 0.2186 2.3164 0.0100 30 1 2.8443 6.1552 -0.0091 31 1 1.5006 8.2146 -0.0092 32 1 -1.8201 8.4690 -0.8881 33 1 -1.8135 8.4741 0.8918 34 1 -0.7737 10.4275 -0.0074 35 1 -0.7565 3.8258 0.0004 36 1 3.8216 4.6491 -0.0105 37 1 5.1641 2.6147 -0.0104 38 1 5.1810 1.6004 -1.8021 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243821065.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:05:25 Heat of formation + Delta-G solvation = -78.246293 kcal Electronic energy + Delta-G solvation = -23175.844172 eV Core-core repulsion = 19586.855751 eV Total energy + Delta-G solvation = -3588.988420 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.081 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.01403 -40.18015 -38.26618 -37.61503 -37.42370 -35.89174 -33.21675 -32.02028 -30.95330 -30.60123 -28.07517 -27.86888 -25.72586 -24.09346 -23.31838 -22.08512 -21.64560 -20.08052 -18.67035 -18.36632 -17.30134 -16.99039 -16.65469 -16.38233 -16.07204 -16.03952 -15.81855 -15.57781 -15.23102 -14.77968 -14.64210 -14.29186 -14.26696 -13.79772 -13.45642 -13.35929 -12.99587 -12.73506 -12.62000 -12.50742 -12.39330 -12.17923 -11.95895 -11.79932 -11.74111 -11.60328 -11.36665 -11.22441 -10.92044 -10.15605 -9.79570 -9.40501 -9.15488 -8.82501 -6.34228 -0.17698 0.24379 0.91872 1.02634 1.04641 1.51336 1.63865 1.81137 2.31036 2.47045 2.77299 2.85558 3.20853 3.50062 3.75441 3.86907 3.99949 4.18440 4.21155 4.28718 4.37838 4.39611 4.44238 4.50876 4.50977 4.66207 4.76628 4.79979 4.93404 5.04500 5.13702 5.21060 5.36991 5.41845 5.51011 5.64327 5.72641 5.89223 5.97320 6.08762 6.23707 6.41620 6.77846 6.91315 7.04437 7.95739 Molecular weight = 318.08amu Principal moments of inertia in cm(-1) A = 0.020149 B = 0.003252 C = 0.002833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1389.315879 B = 8608.980043 C = 9880.850560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.338 6.338 3 C -0.005 4.005 4 C -0.147 4.147 5 C -0.176 4.176 6 C 0.005 3.995 7 C -0.140 4.140 8 C -0.076 4.076 9 C -0.119 4.119 10 C 0.128 3.872 11 O -0.583 6.583 12 C -0.023 4.023 13 Cl -0.062 7.062 14 C -0.137 4.137 15 C -0.081 4.081 16 C -0.223 4.223 17 C 0.060 3.940 18 C -0.520 4.520 19 H 0.072 0.928 20 C 0.003 3.997 21 N -0.803 5.803 22 Si 1.117 2.883 23 H -0.268 1.268 24 H -0.262 1.262 25 H -0.260 1.260 26 H 0.114 0.886 27 H 0.052 0.948 28 H 0.050 0.950 29 H 0.128 0.872 30 H 0.132 0.868 31 H 0.149 0.851 32 H 0.072 0.928 33 H 0.073 0.927 34 H 0.404 0.596 35 H 0.131 0.869 36 H 0.120 0.880 37 H 0.101 0.899 38 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.432 10.869 2.335 16.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.253 6.253 3 C -0.049 4.049 4 C -0.166 4.166 5 C -0.178 4.178 6 C 0.005 3.995 7 C -0.158 4.158 8 C -0.094 4.094 9 C -0.120 4.120 10 C 0.051 3.949 11 O -0.392 6.392 12 C -0.049 4.049 13 Cl -0.033 7.033 14 C -0.155 4.155 15 C -0.100 4.100 16 C -0.242 4.242 17 C 0.056 3.944 18 C -0.547 4.547 19 H 0.091 0.909 20 C -0.214 4.214 21 N -0.425 5.425 22 Si 0.933 3.067 23 H -0.192 1.192 24 H -0.187 1.187 25 H -0.184 1.184 26 H 0.133 0.867 27 H 0.071 0.929 28 H 0.068 0.932 29 H 0.146 0.854 30 H 0.150 0.850 31 H 0.167 0.833 32 H 0.090 0.910 33 H 0.091 0.909 34 H 0.255 0.745 35 H 0.149 0.851 36 H 0.138 0.862 37 H 0.119 0.881 38 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -10.477 9.809 2.127 14.509 hybrid contribution -2.382 0.776 -0.009 2.506 sum -12.860 10.586 2.119 16.790 Atomic orbital electron populations 1.23113 0.78495 1.04464 1.00938 1.85920 1.21554 1.27541 1.90287 1.19155 0.92023 0.84047 1.09700 1.20981 0.98768 0.91421 1.05435 1.18017 0.92289 0.91143 1.16319 1.18805 0.92121 0.92689 0.95889 1.21496 1.00888 0.91442 1.01960 1.20959 0.92554 0.98680 0.97251 1.19762 0.94625 0.93335 1.04274 1.20778 0.89994 0.82648 1.01521 1.86384 1.37550 1.17439 1.97820 1.20480 0.84562 0.93946 1.05941 1.98335 1.09365 1.98731 1.96904 1.21029 0.92889 0.97553 1.04064 1.20638 0.93018 0.97484 0.98823 1.20571 0.98522 0.91821 1.13295 1.17562 0.89527 0.94338 0.92941 1.20661 1.00848 0.97329 1.35880 0.90942 1.28515 1.00592 1.00165 0.92115 1.70572 1.39330 1.15075 1.17551 0.83010 0.73064 0.73310 0.77296 1.19199 1.18690 1.18410 0.86750 0.92914 0.93172 0.85429 0.84997 0.83339 0.90971 0.90927 0.74536 0.85116 0.86186 0.88140 0.90155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.80 9.81 113.37 1.11 1.91 16 2 O -0.34 -15.53 9.78 -89.88 -0.88 -16.41 16 3 C 0.00 -0.25 6.71 23.01 0.15 -0.09 16 4 C -0.15 -6.42 8.40 22.54 0.19 -6.23 16 5 C -0.18 -7.55 5.89 -19.90 -0.12 -7.67 16 6 C 0.01 0.19 5.88 -20.04 -0.12 0.08 16 7 C -0.14 -4.53 9.43 22.53 0.21 -4.32 16 8 C -0.08 -2.16 9.36 22.23 0.21 -1.95 16 9 C -0.12 -3.13 5.89 -19.77 -0.12 -3.24 16 10 C 0.13 2.40 6.39 71.24 0.46 2.85 16 11 O -0.58 -10.05 12.12 -148.98 -1.81 -11.85 16 12 C -0.02 -0.63 6.31 22.29 0.14 -0.49 16 13 Cl -0.06 -1.42 27.96 -2.72 -0.08 -1.49 16 14 C -0.14 -4.43 9.20 22.55 0.21 -4.22 16 15 C -0.08 -3.66 9.35 22.22 0.21 -3.45 16 16 C -0.22 -11.34 7.87 22.43 0.18 -11.16 16 17 C 0.06 3.21 5.31 -21.19 -0.11 3.09 16 18 C -0.52 -28.31 8.63 23.33 0.20 -28.11 16 19 H 0.07 3.97 7.71 -2.91 -0.02 3.95 16 20 C 0.00 0.17 4.93 85.27 0.42 0.59 16 21 N -0.80 -42.66 12.30 21.84 0.27 -42.39 16 22 Si 1.12 42.72 30.00 68.60 2.06 44.78 16 23 H -0.27 -9.93 7.11 99.48 0.71 -9.22 16 24 H -0.26 -9.50 7.11 99.48 0.71 -8.79 16 25 H -0.26 -9.24 7.11 99.48 0.71 -8.54 16 26 H 0.11 2.93 8.14 -2.39 -0.02 2.91 16 27 H 0.05 1.56 7.65 -2.39 -0.02 1.54 16 28 H 0.05 1.51 7.67 -2.39 -0.02 1.49 16 29 H 0.13 4.77 4.41 -2.91 -0.01 4.76 16 30 H 0.13 4.06 6.18 -2.91 -0.02 4.04 16 31 H 0.15 3.76 6.99 -2.91 -0.02 3.74 16 32 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 33 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 34 H 0.40 2.66 9.12 -74.06 -0.68 1.99 16 35 H 0.13 4.06 6.18 -2.91 -0.02 4.05 16 36 H 0.12 4.70 6.16 -2.91 -0.02 4.69 16 37 H 0.10 5.28 6.47 -2.91 -0.02 5.27 16 38 H 0.29 15.84 6.69 -92.71 -0.62 15.22 16 Total: -1.00 -63.76 332.50 3.39 -60.37 By element: Atomic # 1 Polarization: 28.80 SS G_CDS: 0.60 Total: 29.40 kcal Atomic # 6 Polarization: -65.63 SS G_CDS: 3.22 Total: -62.40 kcal Atomic # 7 Polarization: -42.66 SS G_CDS: 0.27 Total: -42.39 kcal Atomic # 8 Polarization: -25.57 SS G_CDS: -2.69 Total: -28.26 kcal Atomic # 14 Polarization: 42.72 SS G_CDS: 2.06 Total: 44.78 kcal Atomic # 17 Polarization: -1.42 SS G_CDS: -0.08 Total: -1.49 kcal Total: -63.76 3.39 -60.37 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243821065.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.873 kcal (2) G-P(sol) polarization free energy of solvation -63.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.374 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds