Wall clock time and date at job start Tue Mar 31 2020 12:03:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42909 * 1 3 3 C 1.35607 * 116.99206 * 2 1 4 4 C 1.39143 * 119.89032 * 0.02562 * 3 2 1 5 5 C 1.36412 * 120.43890 * 179.97438 * 4 3 2 6 6 C 1.40908 * 120.19051 * 0.02562 * 5 4 3 7 7 C 1.41242 * 120.11900 * 180.02562 * 6 5 4 8 8 H 1.08002 * 119.99969 * 24.48653 * 7 6 5 9 9 C 1.39863 * 119.99797 * 204.49405 * 7 6 5 10 10 N 1.30893 * 120.00163 * 17.79799 * 9 7 6 11 11 Si 1.86801 * 119.99931 * 197.79997 * 9 7 6 12 12 H 1.48505 * 109.47110 * 89.99498 * 11 9 7 13 13 H 1.48501 * 109.47411 * 209.99456 * 11 9 7 14 14 H 1.48502 * 109.47119 * 330.00231 * 11 9 7 15 15 C 1.40616 * 119.76127 * 359.70758 * 6 5 4 16 16 C 1.38595 * 119.56923 * 0.53850 * 15 6 5 17 17 C 1.48334 * 120.09932 * 179.75655 * 16 15 6 18 18 C 1.39394 * 120.11921 * 130.01689 * 17 16 15 19 19 C 1.37999 * 119.89931 * 180.29864 * 18 17 16 20 20 C 1.38327 * 120.13790 * 359.68942 * 19 18 17 21 21 C 1.50703 * 119.88117 * 179.97438 * 20 19 18 22 22 O 1.42898 * 109.46906 * 0.02562 * 21 20 19 23 23 C 1.38419 * 120.23599 * 0.02562 * 20 19 18 24 24 Cl 1.73600 * 119.94997 * 179.97438 * 23 20 19 25 25 C 1.38149 * 120.09814 * 0.02562 * 23 20 19 26 26 H 1.09006 * 109.46595 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.46770 * 299.99525 * 1 2 3 28 28 H 1.08991 * 109.47226 * 59.99772 * 1 2 3 29 29 H 1.07997 * 119.77983 * 0.02562 * 4 3 2 30 30 H 1.07999 * 119.90243 * 180.02562 * 5 4 3 31 31 H 0.97004 * 120.00203 * 180.02562 * 10 9 7 32 32 H 1.07995 * 120.21507 * 180.27322 * 15 6 5 33 33 H 1.07991 * 120.04991 * 359.97438 * 18 17 16 34 34 H 1.07994 * 119.93107 * 179.70311 * 19 18 17 35 35 H 1.09001 * 109.46982 * 120.01905 * 21 20 19 36 36 H 1.08996 * 109.47097 * 240.01869 * 21 20 19 37 37 H 0.96706 * 113.99593 * 180.02562 * 22 21 20 38 38 H 1.08000 * 120.06578 * 180.02562 * 25 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0446 1.2084 0.0000 4 6 1.2843 2.3737 0.0005 5 6 1.8918 3.5951 0.0011 6 6 3.2979 3.6872 0.0005 7 6 3.9253 4.9527 0.0016 8 1 3.4027 5.8141 0.3905 9 6 5.2232 5.0901 -0.5010 10 7 5.7264 4.1632 -1.2763 11 14 6.2387 6.5964 -0.0659 12 1 7.0132 6.3303 1.1730 13 1 7.1739 6.9013 -1.1784 14 1 5.3363 7.7551 0.1540 15 6 4.0742 2.5148 0.0057 16 6 3.4467 1.2790 -0.0001 17 6 4.2541 0.0347 -0.0002 18 6 3.9809 -0.9765 0.9194 19 6 4.7389 -2.1297 0.9193 20 6 5.7646 -2.2865 0.0046 21 6 6.5892 -3.5479 0.0100 22 8 6.1207 -4.4187 1.0416 23 6 6.0371 -1.2884 -0.9150 24 17 7.3266 -1.4927 -2.0592 25 6 5.2851 -0.1296 -0.9229 26 1 -0.3633 -1.0278 -0.0005 27 1 -0.3633 0.5137 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 0.2062 2.3109 0.0014 30 1 1.2933 4.4941 0.0019 31 1 6.6267 4.2584 -1.6246 32 1 5.1523 2.5768 0.0098 33 1 3.1806 -0.8556 1.6343 34 1 4.5307 -2.9115 1.6347 35 1 6.4975 -4.0460 -0.9552 36 1 7.6343 -3.2980 0.1921 37 1 6.6071 -5.2522 1.1037 38 1 5.4978 0.6486 -1.6409 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243821140.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:03:43 Heat of formation + Delta-G solvation = -72.367809 kcal Electronic energy + Delta-G solvation = -23578.582926 eV Core-core repulsion = 19989.849416 eV Total energy + Delta-G solvation = -3588.733510 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.081 amu Computer time = 1.80 seconds Orbital eigenvalues (eV) -40.99052 -39.98783 -38.13166 -37.58426 -37.39533 -35.22854 -33.70285 -31.74346 -30.97395 -30.67210 -28.31245 -26.88300 -26.29802 -23.78015 -23.21159 -22.38029 -21.50470 -19.26077 -18.56446 -18.34672 -17.46679 -17.04300 -16.62272 -16.32687 -16.24769 -16.00927 -15.81765 -15.42756 -14.88726 -14.68658 -14.39912 -14.38016 -14.01657 -13.78592 -13.39370 -13.20835 -12.90760 -12.80414 -12.66154 -12.50263 -12.33782 -12.29300 -12.11734 -11.84340 -11.70943 -11.58026 -11.21209 -11.18391 -10.87140 -9.95552 -9.73183 -9.16059 -8.81947 -8.54153 -6.22189 0.03275 0.29075 0.95990 1.01211 1.12355 1.39467 1.51579 1.51763 2.22554 2.59544 2.74946 2.86490 3.21293 3.65378 3.75558 3.98421 4.06215 4.27319 4.30033 4.40006 4.46540 4.51246 4.52590 4.58448 4.64403 4.77919 4.82111 4.97965 5.05928 5.17092 5.25029 5.28302 5.38861 5.47496 5.57441 5.69707 5.82547 5.91285 6.06526 6.25376 6.56480 6.80288 6.94323 6.95829 7.07936 8.37483 Molecular weight = 318.08amu Principal moments of inertia in cm(-1) A = 0.010798 B = 0.004843 C = 0.003599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2592.398631 B = 5780.646502 C = 7777.799432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.333 6.333 3 C 0.020 3.980 4 C -0.169 4.169 5 C -0.198 4.198 6 C 0.054 3.946 7 C -0.499 4.499 8 H 0.076 0.924 9 C 0.037 3.963 10 N -0.827 5.827 11 Si 0.976 3.024 12 H -0.265 1.265 13 H -0.270 1.270 14 H -0.258 1.258 15 C -0.134 4.134 16 C -0.079 4.079 17 C -0.017 4.017 18 C -0.097 4.097 19 C -0.086 4.086 20 C -0.099 4.099 21 C 0.128 3.872 22 O -0.580 6.580 23 C -0.034 4.034 24 Cl -0.064 7.064 25 C -0.112 4.112 26 H 0.115 0.885 27 H 0.054 0.946 28 H 0.048 0.952 29 H 0.132 0.868 30 H 0.106 0.894 31 H 0.286 0.714 32 H 0.110 0.890 33 H 0.129 0.871 34 H 0.155 0.845 35 H 0.075 0.925 36 H 0.073 0.927 37 H 0.404 0.596 38 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.728 -13.867 2.010 14.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.249 6.249 3 C -0.024 4.024 4 C -0.187 4.187 5 C -0.217 4.217 6 C 0.052 3.948 7 C -0.529 4.529 8 H 0.094 0.906 9 C -0.177 4.177 10 N -0.454 5.454 11 Si 0.797 3.203 12 H -0.190 1.190 13 H -0.195 1.195 14 H -0.182 1.182 15 C -0.153 4.153 16 C -0.080 4.080 17 C -0.017 4.017 18 C -0.115 4.115 19 C -0.104 4.104 20 C -0.100 4.100 21 C 0.051 3.949 22 O -0.389 6.389 23 C -0.061 4.061 24 Cl -0.035 7.035 25 C -0.131 4.131 26 H 0.133 0.867 27 H 0.073 0.927 28 H 0.066 0.934 29 H 0.150 0.850 30 H 0.124 0.876 31 H 0.096 0.904 32 H 0.128 0.872 33 H 0.147 0.853 34 H 0.172 0.828 35 H 0.093 0.907 36 H 0.091 0.909 37 H 0.255 0.745 38 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 0.712 -13.651 1.847 13.794 hybrid contribution 0.638 0.909 -0.406 1.182 sum 1.349 -12.742 1.441 12.895 Atomic orbital electron populations 1.23102 0.78293 1.04390 1.01114 1.85875 1.21766 1.26744 1.90477 1.18630 0.90618 0.84268 1.08933 1.20666 0.99212 0.91923 1.06947 1.20859 0.94315 0.96514 1.10040 1.17840 0.91825 0.93737 0.91358 1.19674 0.99928 0.95125 1.38132 0.90619 1.26630 0.98499 1.00675 0.91903 1.69876 1.16755 1.35455 1.23336 0.85290 0.78044 0.78111 0.78816 1.18997 1.19489 1.18163 1.21208 0.99185 0.90173 1.04746 1.18105 0.89991 0.92413 1.07503 1.18807 0.94184 0.93744 0.95007 1.21375 0.99336 0.92792 0.97964 1.20986 0.93820 0.97179 0.98382 1.19796 0.98664 0.95802 0.95755 1.20773 0.95447 0.87198 0.91506 1.86379 1.63040 1.33900 1.55594 1.20467 0.94076 0.96126 0.95429 1.98326 1.48564 1.97230 1.59418 1.21071 0.95707 0.96613 0.99723 0.86670 0.92711 0.93377 0.85021 0.87572 0.90360 0.87172 0.85295 0.82763 0.90711 0.90870 0.74472 0.86536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.70 9.80 113.37 1.11 1.81 16 2 O -0.33 -12.70 8.79 -89.18 -0.78 -13.48 16 3 C 0.02 0.88 6.62 23.01 0.15 1.03 16 4 C -0.17 -7.28 8.95 22.06 0.20 -7.08 16 5 C -0.20 -9.55 9.72 22.50 0.22 -9.33 16 6 C 0.05 2.94 5.57 -21.31 -0.12 2.82 16 7 C -0.50 -26.86 9.04 23.40 0.21 -26.65 16 8 H 0.08 3.93 7.91 -2.91 -0.02 3.90 16 9 C 0.04 1.88 5.13 85.23 0.44 2.32 16 10 N -0.83 -43.61 10.97 21.81 0.24 -43.37 16 11 Si 0.98 38.79 29.59 68.60 2.03 40.82 16 12 H -0.27 -10.32 7.11 99.48 0.71 -9.61 16 13 H -0.27 -10.27 7.11 99.48 0.71 -9.57 16 14 H -0.26 -9.93 7.11 99.48 0.71 -9.22 16 15 C -0.13 -7.09 8.14 22.94 0.19 -6.91 16 16 C -0.08 -3.80 5.48 -19.98 -0.11 -3.91 16 17 C -0.02 -0.72 5.27 -20.05 -0.11 -0.83 16 18 C -0.10 -3.52 8.77 22.49 0.20 -3.32 16 19 C -0.09 -2.67 9.36 22.23 0.21 -2.46 16 20 C -0.10 -2.96 5.89 -19.80 -0.12 -3.08 16 21 C 0.13 2.71 6.40 71.24 0.46 3.17 16 22 O -0.58 -10.75 12.13 -148.98 -1.81 -12.56 16 23 C -0.03 -1.16 6.31 22.29 0.14 -1.02 16 24 Cl -0.06 -1.85 27.97 -2.72 -0.08 -1.93 16 25 C -0.11 -4.57 9.29 22.51 0.21 -4.36 16 26 H 0.12 2.37 8.14 -2.38 -0.02 2.36 16 27 H 0.05 1.37 7.64 -2.39 -0.02 1.35 16 28 H 0.05 1.26 7.65 -2.39 -0.02 1.25 16 29 H 0.13 4.67 6.26 -2.91 -0.02 4.66 16 30 H 0.11 4.77 8.06 -2.91 -0.02 4.74 16 31 H 0.29 13.78 8.30 -92.71 -0.77 13.01 16 32 H 0.11 6.18 6.15 -2.91 -0.02 6.16 16 33 H 0.13 4.55 7.66 -2.92 -0.02 4.53 16 34 H 0.15 4.17 6.99 -2.91 -0.02 4.15 16 35 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 36 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 37 H 0.40 3.09 9.12 -74.05 -0.68 2.41 16 38 H 0.12 5.19 8.04 -2.91 -0.02 5.16 16 Total: -1.00 -63.61 338.70 3.31 -60.30 By element: Atomic # 1 Polarization: 27.58 SS G_CDS: 0.43 Total: 28.02 kcal Atomic # 6 Polarization: -61.08 SS G_CDS: 3.28 Total: -57.80 kcal Atomic # 7 Polarization: -43.61 SS G_CDS: 0.24 Total: -43.37 kcal Atomic # 8 Polarization: -23.45 SS G_CDS: -2.59 Total: -26.04 kcal Atomic # 14 Polarization: 38.79 SS G_CDS: 2.03 Total: 40.82 kcal Atomic # 17 Polarization: -1.85 SS G_CDS: -0.08 Total: -1.93 kcal Total: -63.61 3.31 -60.30 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243821140.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.070 kcal (2) G-P(sol) polarization free energy of solvation -63.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.297 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.80 seconds