Wall clock time and date at job start Tue Mar 31 2020 12:05:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35600 * 116.99817 * 2 1 4 4 C 1.38524 * 120.08519 * 359.97438 * 3 2 1 5 5 C 1.38028 * 120.30592 * 180.02562 * 4 3 2 6 6 C 1.39927 * 120.47382 * 359.72457 * 5 4 3 7 7 C 1.48373 * 119.92167 * 180.30107 * 6 5 4 8 8 C 1.39375 * 120.11453 * 129.97349 * 7 6 5 9 9 C 1.38002 * 119.89947 * 179.74722 * 8 7 6 10 10 C 1.38319 * 120.13689 * 0.55856 * 9 8 7 11 11 C 1.38419 * 120.23648 * 359.69450 * 10 9 8 12 12 Cl 1.73603 * 119.95470 * 180.02562 * 11 10 9 13 13 C 1.38155 * 120.09321 * 0.02562 * 11 10 9 14 14 C 1.50703 * 120.06780 * 180.02562 * 13 11 10 15 15 O 1.42898 * 109.47409 * 269.98121 * 14 13 11 16 16 C 1.38616 * 120.16034 * 0.55427 * 6 5 4 17 17 C 1.40526 * 119.69001 * 359.45251 * 16 6 5 18 18 C 1.41173 * 120.23350 * 180.25404 * 17 16 6 19 19 H 1.08004 * 119.99972 * 154.48894 * 18 17 16 20 20 C 1.39902 * 120.00029 * 334.48914 * 18 17 16 21 21 N 1.30885 * 120.00287 * 343.12407 * 20 18 17 22 22 Si 1.86801 * 120.00148 * 163.12493 * 20 18 17 23 23 H 1.48501 * 109.47188 * 89.99818 * 22 20 18 24 24 H 1.48502 * 109.47473 * 209.99931 * 22 20 18 25 25 H 1.48501 * 109.47138 * 329.99800 * 22 20 18 26 26 H 1.09000 * 109.46873 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47320 * 300.00140 * 1 2 3 28 28 H 1.08999 * 109.46858 * 60.00106 * 1 2 3 29 29 H 1.07996 * 119.84263 * 0.04133 * 4 3 2 30 30 H 1.08002 * 119.75796 * 180.02562 * 5 4 3 31 31 H 1.07998 * 120.05063 * 359.97438 * 8 7 6 32 32 H 1.08006 * 119.92870 * 180.25246 * 9 8 7 33 33 H 1.08012 * 119.88602 * 179.72529 * 10 9 8 34 34 H 1.08994 * 109.46776 * 29.98677 * 14 13 11 35 35 H 1.09005 * 109.46669 * 149.98031 * 14 13 11 36 36 H 0.96696 * 114.00086 * 179.97438 * 15 14 13 37 37 H 1.08003 * 120.15640 * 179.71709 * 16 6 5 38 38 H 0.96992 * 120.00102 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0446 1.2082 0.0000 4 6 1.2919 2.3711 -0.0005 5 6 1.9137 3.6033 -0.0011 6 6 3.3101 3.6936 0.0047 7 6 3.9657 5.0246 0.0108 8 6 4.9658 5.3072 0.9395 9 6 5.5763 6.5448 0.9378 10 6 5.1896 7.5087 0.0242 11 6 4.1933 7.2359 -0.8972 12 17 3.7141 8.4508 -2.0409 13 6 3.5797 5.9981 -0.9079 14 6 2.4954 5.7016 -1.9116 15 8 1.2260 6.0593 -1.3614 16 6 4.0823 2.5425 -0.0005 17 6 3.4564 1.2843 0.0000 18 6 4.2318 0.1046 0.0000 19 1 3.8231 -0.8102 0.4032 20 6 5.5296 0.1205 -0.5221 21 7 5.9113 1.1038 -1.2971 22 14 6.7179 -1.2616 -0.1133 23 1 6.5903 -2.3400 -1.1263 24 1 8.1075 -0.7380 -0.1201 25 1 6.4006 -1.8057 1.2315 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 0.2135 2.3132 -0.0003 30 1 1.3182 4.5043 -0.0011 31 1 5.2652 4.5575 1.6569 32 1 6.3542 6.7629 1.6546 33 1 5.6671 8.4775 0.0294 34 1 2.6734 6.2778 -2.8195 35 1 2.5016 4.6378 -2.1495 36 1 0.4801 5.8955 -1.9545 37 1 5.1601 2.6122 -0.0007 38 1 6.8112 1.1149 -1.6588 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244574961.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:05:53 Heat of formation + Delta-G solvation = -51.868292 kcal Electronic energy + Delta-G solvation = -24001.367675 eV Core-core repulsion = 20413.523090 eV Total energy + Delta-G solvation = -3587.844585 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.081 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -39.55121 -38.48909 -36.48658 -36.27182 -35.84471 -33.73756 -31.68119 -30.91546 -29.81695 -27.94475 -26.54532 -25.57886 -25.15863 -22.49475 -21.40372 -20.74051 -19.77400 -17.51889 -17.13235 -16.65188 -16.31463 -15.67461 -15.31248 -15.02600 -14.70968 -14.50654 -13.90648 -13.70172 -13.66096 -13.16847 -12.99592 -12.72471 -12.43595 -12.12749 -11.76150 -11.74292 -11.43717 -11.21092 -11.16014 -11.13317 -10.91308 -10.84614 -10.51498 -10.47489 -9.96428 -9.89512 -9.65899 -9.37068 -9.18530 -8.53423 -8.37790 -7.53296 -6.93024 -6.68702 -4.26789 1.45256 1.46098 2.32471 2.73509 2.85510 3.08965 3.12339 3.19155 3.91907 3.96012 4.45007 4.57112 4.72922 5.06827 5.17313 5.39562 5.41029 5.52131 5.65743 5.72280 5.76695 5.79941 5.91614 5.94267 6.10372 6.13271 6.22490 6.42009 6.48365 6.65752 6.84252 6.85247 7.07827 7.09764 7.27135 7.31534 7.66476 7.68151 7.89475 7.94921 8.13661 8.33633 8.65250 8.81953 9.01427 10.20856 Molecular weight = 318.08amu Principal moments of inertia in cm(-1) A = 0.013033 B = 0.004719 C = 0.003768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2147.920085 B = 5932.598997 C = 7429.804147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.312 6.312 3 C 0.024 3.976 4 C -0.185 4.185 5 C -0.183 4.183 6 C -0.085 4.085 7 C 0.029 3.971 8 C -0.113 4.113 9 C -0.102 4.102 10 C -0.136 4.136 11 C -0.015 4.015 12 Cl -0.081 7.081 13 C -0.082 4.082 14 C 0.117 3.883 15 O -0.558 6.558 16 C -0.118 4.118 17 C 0.091 3.909 18 C -0.447 4.447 19 H 0.082 0.918 20 C 0.074 3.926 21 N -0.799 5.799 22 Si 0.907 3.093 23 H -0.270 1.270 24 H -0.277 1.277 25 H -0.261 1.261 26 H 0.081 0.919 27 H 0.040 0.960 28 H 0.040 0.960 29 H 0.098 0.902 30 H 0.118 0.882 31 H 0.131 0.869 32 H 0.128 0.872 33 H 0.127 0.873 34 H 0.050 0.950 35 H 0.071 0.929 36 H 0.374 0.626 37 H 0.128 0.872 38 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.964 8.260 0.033 8.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.226 6.226 3 C -0.021 4.021 4 C -0.204 4.204 5 C -0.202 4.202 6 C -0.086 4.086 7 C 0.029 3.971 8 C -0.131 4.131 9 C -0.121 4.121 10 C -0.154 4.154 11 C -0.041 4.041 12 Cl -0.052 7.052 13 C -0.083 4.083 14 C 0.040 3.960 15 O -0.363 6.363 16 C -0.138 4.138 17 C 0.089 3.911 18 C -0.477 4.477 19 H 0.100 0.900 20 C -0.143 4.143 21 N -0.425 5.425 22 Si 0.732 3.268 23 H -0.196 1.196 24 H -0.202 1.202 25 H -0.185 1.185 26 H 0.100 0.900 27 H 0.058 0.942 28 H 0.059 0.941 29 H 0.116 0.884 30 H 0.135 0.865 31 H 0.149 0.851 32 H 0.146 0.854 33 H 0.145 0.855 34 H 0.068 0.932 35 H 0.089 0.911 36 H 0.220 0.780 37 H 0.146 0.854 38 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -2.331 8.417 0.288 8.739 hybrid contribution 0.004 -0.455 -0.559 0.720 sum -2.328 7.963 -0.271 8.300 Atomic orbital electron populations 1.22744 0.81658 1.01773 0.99977 1.85962 1.18293 1.28365 1.89961 1.19410 0.92431 0.82669 1.07592 1.20587 0.97476 0.92724 1.09628 1.20653 0.92979 0.96449 1.10114 1.18338 0.93128 0.90134 1.06975 1.18928 0.93300 0.93091 0.91777 1.21415 0.95994 0.96798 0.98928 1.21001 0.99585 0.93189 0.98297 1.20875 0.98022 1.00348 0.96185 1.20670 0.99057 0.89752 0.94625 1.98323 1.91622 1.55181 1.60054 1.19481 0.98194 0.91991 0.98653 1.20903 0.81869 1.00316 0.92879 1.86519 1.15682 1.88238 1.45863 1.21176 0.99367 0.89423 1.03815 1.16938 0.87277 0.93845 0.93055 1.19366 0.97006 0.96656 1.34633 0.90007 1.25860 0.98764 0.96893 0.92779 1.69820 1.19357 1.30784 1.22580 0.86327 0.79095 0.81214 0.80205 1.19572 1.20198 1.18492 0.90022 0.94151 0.94116 0.88416 0.86467 0.85138 0.85430 0.85538 0.93196 0.91104 0.77972 0.85393 0.90933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.57 9.81 101.05 0.99 1.56 16 2 O -0.31 -7.05 9.77 -18.50 -0.18 -7.23 16 3 C 0.02 0.57 6.72 -38.28 -0.26 0.31 16 4 C -0.19 -4.01 9.01 -39.55 -0.36 -4.36 16 5 C -0.18 -3.91 7.86 -39.03 -0.31 -4.22 16 6 C -0.09 -1.90 4.72 -104.95 -0.50 -2.39 16 7 C 0.03 0.58 5.46 -104.90 -0.57 0.01 16 8 C -0.11 -1.98 9.50 -39.24 -0.37 -2.36 16 9 C -0.10 -1.50 10.03 -39.64 -0.40 -1.90 16 10 C -0.14 -1.98 9.82 -39.48 -0.39 -2.37 16 11 C -0.01 -0.24 6.31 -39.55 -0.25 -0.49 16 12 Cl -0.08 -1.15 27.29 -51.86 -1.42 -2.57 16 13 C -0.08 -1.50 5.50 -104.25 -0.57 -2.07 16 14 C 0.12 1.96 5.72 36.01 0.21 2.17 16 15 O -0.56 -8.64 11.35 -35.23 -0.40 -9.04 16 16 C -0.12 -2.92 8.12 -38.58 -0.31 -3.23 16 17 C 0.09 2.38 5.57 -106.72 -0.59 1.79 16 18 C -0.45 -11.79 8.70 -37.85 -0.33 -12.12 16 19 H 0.08 2.16 7.65 -52.48 -0.40 1.76 16 20 C 0.07 1.82 5.15 -17.33 -0.09 1.73 16 21 N -0.80 -20.23 10.97 55.55 0.61 -19.62 16 22 Si 0.91 18.65 29.59 -169.99 -5.03 13.62 16 23 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 24 H -0.28 -5.54 7.11 56.52 0.40 -5.14 16 25 H -0.26 -5.35 7.11 56.52 0.40 -4.94 16 26 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 27 H 0.04 0.62 7.66 -51.93 -0.40 0.22 16 28 H 0.04 0.63 7.65 -51.93 -0.40 0.23 16 29 H 0.10 1.85 6.27 -52.49 -0.33 1.52 16 30 H 0.12 2.37 5.45 -52.49 -0.29 2.08 16 31 H 0.13 2.22 8.04 -52.49 -0.42 1.79 16 32 H 0.13 1.46 8.06 -52.48 -0.42 1.04 16 33 H 0.13 1.51 8.06 -52.48 -0.42 1.09 16 34 H 0.05 0.75 6.90 -51.93 -0.36 0.40 16 35 H 0.07 1.31 6.45 -51.93 -0.33 0.98 16 36 H 0.37 4.04 9.12 45.56 0.42 4.46 16 37 H 0.13 3.27 6.17 -52.48 -0.32 2.95 16 38 H 0.28 6.50 8.30 -40.82 -0.34 6.16 16 LS Contribution 332.23 15.07 5.01 5.01 Total: -1.00 -28.86 332.23 -8.75 -37.61 By element: Atomic # 1 Polarization: 13.38 SS G_CDS: -3.24 Total: 10.14 kcal Atomic # 6 Polarization: -23.83 SS G_CDS: -4.10 Total: -27.93 kcal Atomic # 7 Polarization: -20.23 SS G_CDS: 0.61 Total: -19.62 kcal Atomic # 8 Polarization: -15.69 SS G_CDS: -0.58 Total: -16.27 kcal Atomic # 14 Polarization: 18.65 SS G_CDS: -5.03 Total: 13.62 kcal Atomic # 17 Polarization: -1.15 SS G_CDS: -1.42 Total: -2.57 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -28.86 -8.75 -37.61 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244574961.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.255 kcal (2) G-P(sol) polarization free energy of solvation -28.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.614 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds