Wall clock time and date at job start Tue Mar 31 2020 12:05:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35600 * 116.99817 * 2 1 4 4 C 1.38524 * 120.08519 * 359.97438 * 3 2 1 5 5 C 1.38028 * 120.30592 * 180.02562 * 4 3 2 6 6 C 1.39927 * 120.47382 * 359.72457 * 5 4 3 7 7 C 1.48373 * 119.92167 * 180.30107 * 6 5 4 8 8 C 1.39375 * 120.11453 * 129.97349 * 7 6 5 9 9 C 1.38002 * 119.89947 * 179.74722 * 8 7 6 10 10 C 1.38319 * 120.13689 * 0.55856 * 9 8 7 11 11 C 1.38419 * 120.23648 * 359.69450 * 10 9 8 12 12 Cl 1.73603 * 119.95470 * 180.02562 * 11 10 9 13 13 C 1.38155 * 120.09321 * 0.02562 * 11 10 9 14 14 C 1.50703 * 120.06780 * 180.02562 * 13 11 10 15 15 O 1.42898 * 109.47409 * 269.98121 * 14 13 11 16 16 C 1.38616 * 120.16034 * 0.55427 * 6 5 4 17 17 C 1.40526 * 119.69001 * 359.45251 * 16 6 5 18 18 C 1.41173 * 120.23350 * 180.25404 * 17 16 6 19 19 H 1.08004 * 119.99972 * 154.48894 * 18 17 16 20 20 C 1.39902 * 120.00029 * 334.48914 * 18 17 16 21 21 N 1.30885 * 120.00287 * 343.12407 * 20 18 17 22 22 Si 1.86801 * 120.00148 * 163.12493 * 20 18 17 23 23 H 1.48501 * 109.47188 * 89.99818 * 22 20 18 24 24 H 1.48502 * 109.47473 * 209.99931 * 22 20 18 25 25 H 1.48501 * 109.47138 * 329.99800 * 22 20 18 26 26 H 1.09000 * 109.46873 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47320 * 300.00140 * 1 2 3 28 28 H 1.08999 * 109.46858 * 60.00106 * 1 2 3 29 29 H 1.07996 * 119.84263 * 0.04133 * 4 3 2 30 30 H 1.08002 * 119.75796 * 180.02562 * 5 4 3 31 31 H 1.07998 * 120.05063 * 359.97438 * 8 7 6 32 32 H 1.08006 * 119.92870 * 180.25246 * 9 8 7 33 33 H 1.08012 * 119.88602 * 179.72529 * 10 9 8 34 34 H 1.08994 * 109.46776 * 29.98677 * 14 13 11 35 35 H 1.09005 * 109.46669 * 149.98031 * 14 13 11 36 36 H 0.96696 * 114.00086 * 179.97438 * 15 14 13 37 37 H 1.08003 * 120.15640 * 179.71709 * 16 6 5 38 38 H 0.96992 * 120.00102 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0446 1.2082 0.0000 4 6 1.2919 2.3711 -0.0005 5 6 1.9137 3.6033 -0.0011 6 6 3.3101 3.6936 0.0047 7 6 3.9657 5.0246 0.0108 8 6 4.9658 5.3072 0.9395 9 6 5.5763 6.5448 0.9378 10 6 5.1896 7.5087 0.0242 11 6 4.1933 7.2359 -0.8972 12 17 3.7141 8.4508 -2.0409 13 6 3.5797 5.9981 -0.9079 14 6 2.4954 5.7016 -1.9116 15 8 1.2260 6.0593 -1.3614 16 6 4.0823 2.5425 -0.0005 17 6 3.4564 1.2843 0.0000 18 6 4.2318 0.1046 0.0000 19 1 3.8231 -0.8102 0.4032 20 6 5.5296 0.1205 -0.5221 21 7 5.9113 1.1038 -1.2971 22 14 6.7179 -1.2616 -0.1133 23 1 6.5903 -2.3400 -1.1263 24 1 8.1075 -0.7380 -0.1201 25 1 6.4006 -1.8057 1.2315 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 0.2135 2.3132 -0.0003 30 1 1.3182 4.5043 -0.0011 31 1 5.2652 4.5575 1.6569 32 1 6.3542 6.7629 1.6546 33 1 5.6671 8.4775 0.0294 34 1 2.6734 6.2778 -2.8195 35 1 2.5016 4.6378 -2.1495 36 1 0.4801 5.8955 -1.9545 37 1 5.1601 2.6122 -0.0007 38 1 6.8112 1.1149 -1.6588 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244574961.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:05:52 Heat of formation + Delta-G solvation = -68.461045 kcal Electronic energy + Delta-G solvation = -24002.087191 eV Core-core repulsion = 20413.523090 eV Total energy + Delta-G solvation = -3588.564100 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.081 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.98357 -40.07871 -37.92387 -37.51488 -37.27079 -35.52921 -33.10197 -32.25669 -31.60656 -29.48727 -28.02678 -26.95808 -26.89003 -23.92688 -22.99785 -22.26193 -21.33651 -19.26753 -18.40908 -18.27063 -17.75280 -17.11995 -16.86959 -16.41636 -16.27029 -16.10603 -15.41808 -15.09250 -14.92802 -14.59680 -14.44417 -14.34267 -14.03788 -13.45292 -13.42093 -13.17758 -12.94666 -12.80783 -12.60472 -12.46434 -12.38909 -12.30215 -12.09079 -11.92822 -11.55949 -11.44215 -11.25073 -11.01994 -10.79215 -9.87856 -9.67775 -9.36922 -8.69610 -8.46227 -6.19771 0.10043 0.17974 0.97968 1.05649 1.18347 1.39117 1.48889 1.54598 2.24498 2.59242 2.77946 2.91969 3.49203 3.67120 3.77807 3.97171 4.09191 4.16531 4.36325 4.44093 4.45151 4.48374 4.49800 4.63985 4.72740 4.74161 4.77653 4.92462 5.07985 5.21734 5.24165 5.35290 5.38975 5.48462 5.63399 5.76471 5.89713 5.93855 6.17027 6.31926 6.50097 6.80720 6.88204 6.94228 7.23418 8.39576 Molecular weight = 318.08amu Principal moments of inertia in cm(-1) A = 0.013033 B = 0.004719 C = 0.003768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2147.920085 B = 5932.598997 C = 7429.804147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.340 6.340 3 C 0.009 3.991 4 C -0.185 4.185 5 C -0.174 4.174 6 C -0.083 4.083 7 C -0.006 4.006 8 C -0.127 4.127 9 C -0.092 4.092 10 C -0.124 4.124 11 C -0.024 4.024 12 Cl -0.062 7.062 13 C -0.098 4.098 14 C 0.126 3.874 15 O -0.566 6.566 16 C -0.135 4.135 17 C 0.054 3.946 18 C -0.485 4.485 19 H 0.067 0.933 20 C 0.036 3.964 21 N -0.829 5.829 22 Si 0.975 3.025 23 H -0.266 1.266 24 H -0.264 1.264 25 H -0.262 1.262 26 H 0.110 0.890 27 H 0.053 0.947 28 H 0.051 0.949 29 H 0.128 0.872 30 H 0.133 0.867 31 H 0.124 0.876 32 H 0.166 0.834 33 H 0.161 0.839 34 H 0.066 0.934 35 H 0.044 0.956 36 H 0.394 0.606 37 H 0.110 0.890 38 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.062 10.137 0.191 10.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.255 6.255 3 C -0.035 4.035 4 C -0.204 4.204 5 C -0.193 4.193 6 C -0.083 4.083 7 C -0.007 4.007 8 C -0.145 4.145 9 C -0.110 4.110 10 C -0.142 4.142 11 C -0.051 4.051 12 Cl -0.033 7.033 13 C -0.098 4.098 14 C 0.048 3.952 15 O -0.374 6.374 16 C -0.155 4.155 17 C 0.052 3.948 18 C -0.515 4.515 19 H 0.085 0.915 20 C -0.177 4.177 21 N -0.456 5.456 22 Si 0.797 3.203 23 H -0.191 1.191 24 H -0.189 1.189 25 H -0.186 1.186 26 H 0.129 0.871 27 H 0.071 0.929 28 H 0.070 0.930 29 H 0.146 0.854 30 H 0.151 0.849 31 H 0.142 0.858 32 H 0.183 0.817 33 H 0.179 0.821 34 H 0.084 0.916 35 H 0.063 0.937 36 H 0.244 0.756 37 H 0.128 0.872 38 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -2.470 10.303 0.435 10.604 hybrid contribution -0.125 -0.862 -0.629 1.074 sum -2.595 9.442 -0.194 9.794 Atomic orbital electron populations 1.23093 0.78568 1.04192 1.01040 1.85907 1.21567 1.28028 1.89985 1.19561 0.92288 0.83983 1.07696 1.20896 0.98950 0.91953 1.08552 1.20929 0.92930 0.96979 1.08479 1.18571 0.93552 0.90931 1.05264 1.18926 0.95171 0.92499 0.94073 1.21528 0.96048 0.98214 0.98728 1.21374 0.99427 0.91624 0.98566 1.21328 0.96709 1.01549 0.94653 1.20831 0.99271 0.89604 0.95392 1.98327 1.91540 1.54040 1.59416 1.19632 0.98919 0.92585 0.98702 1.20739 0.82327 0.98904 0.93213 1.86458 1.15993 1.88039 1.46896 1.21061 0.98757 0.90158 1.05476 1.17335 0.88809 0.94396 0.94249 1.19456 0.98674 0.96515 1.36839 0.91459 1.26593 0.99704 0.99331 0.92069 1.69878 1.19966 1.32464 1.23338 0.85306 0.77154 0.78157 0.79707 1.19071 1.18877 1.18594 0.87125 0.92855 0.93021 0.85402 0.84894 0.85776 0.81682 0.82116 0.91639 0.93746 0.75642 0.87177 0.90395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.83 9.81 113.37 1.11 1.94 16 2 O -0.34 -15.71 9.77 -89.10 -0.87 -16.58 16 3 C 0.01 0.47 6.72 23.11 0.16 0.63 16 4 C -0.18 -7.99 9.01 22.29 0.20 -7.79 16 5 C -0.17 -7.48 7.86 22.63 0.18 -7.31 16 6 C -0.08 -3.79 4.72 -20.08 -0.09 -3.89 16 7 C -0.01 -0.25 5.46 -20.04 -0.11 -0.36 16 8 C -0.13 -4.42 9.50 22.49 0.21 -4.21 16 9 C -0.09 -2.46 10.03 22.23 0.22 -2.24 16 10 C -0.12 -3.22 9.82 22.33 0.22 -3.00 16 11 C -0.02 -0.74 6.31 22.29 0.14 -0.60 16 12 Cl -0.06 -1.61 27.29 -2.72 -0.07 -1.69 16 13 C -0.10 -3.47 5.50 -19.62 -0.11 -3.58 16 14 C 0.13 4.11 5.72 71.24 0.41 4.52 16 15 O -0.57 -16.59 11.35 -148.98 -1.69 -18.28 16 16 C -0.13 -7.02 8.12 22.92 0.19 -6.84 16 17 C 0.05 2.99 5.57 -21.23 -0.12 2.87 16 18 C -0.48 -27.08 8.70 23.39 0.20 -26.88 16 19 H 0.07 3.79 7.65 -2.91 -0.02 3.77 16 20 C 0.04 1.88 5.15 85.24 0.44 2.32 16 21 N -0.83 -43.87 10.97 21.82 0.24 -43.63 16 22 Si 0.98 39.48 29.59 68.60 2.03 41.51 16 23 H -0.27 -10.46 7.11 99.48 0.71 -9.75 16 24 H -0.26 -10.05 7.11 99.48 0.71 -9.34 16 25 H -0.26 -10.50 7.11 99.48 0.71 -9.79 16 26 H 0.11 2.83 8.14 -2.39 -0.02 2.81 16 27 H 0.05 1.55 7.66 -2.39 -0.02 1.53 16 28 H 0.05 1.52 7.65 -2.39 -0.02 1.50 16 29 H 0.13 4.62 6.27 -2.91 -0.02 4.61 16 30 H 0.13 5.25 5.45 -2.91 -0.02 5.23 16 31 H 0.12 4.35 8.04 -2.91 -0.02 4.33 16 32 H 0.17 3.12 8.06 -2.91 -0.02 3.10 16 33 H 0.16 3.06 8.06 -2.90 -0.02 3.04 16 34 H 0.07 1.90 6.90 -2.39 -0.02 1.88 16 35 H 0.04 1.67 6.45 -2.38 -0.02 1.66 16 36 H 0.39 7.74 9.12 -74.06 -0.68 7.07 16 37 H 0.11 6.02 6.17 -2.91 -0.02 6.00 16 38 H 0.29 13.74 8.30 -92.71 -0.77 12.97 16 Total: -1.00 -65.80 332.23 3.33 -62.48 By element: Atomic # 1 Polarization: 30.16 SS G_CDS: 0.44 Total: 30.60 kcal Atomic # 6 Polarization: -57.65 SS G_CDS: 3.25 Total: -54.40 kcal Atomic # 7 Polarization: -43.87 SS G_CDS: 0.24 Total: -43.63 kcal Atomic # 8 Polarization: -32.31 SS G_CDS: -2.56 Total: -34.87 kcal Atomic # 14 Polarization: 39.48 SS G_CDS: 2.03 Total: 41.51 kcal Atomic # 17 Polarization: -1.61 SS G_CDS: -0.07 Total: -1.69 kcal Total: -65.80 3.33 -62.48 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244574961.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.986 kcal (2) G-P(sol) polarization free energy of solvation -65.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.475 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds