Wall clock time and date at job start Tue Mar 31 2020 12:05:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35661 * 117.00186 * 2 1 4 4 C 1.37980 * 120.19937 * 359.97438 * 3 2 1 5 5 C 1.39625 * 119.93741 * 180.02562 * 4 3 2 6 6 C 1.48031 * 119.83860 * 180.25813 * 5 4 3 7 7 C 1.39580 * 120.13463 * 359.71911 * 6 5 4 8 8 C 1.38037 * 119.84237 * 179.97438 * 7 6 5 9 9 Cl 1.73603 * 119.94234 * 180.02562 * 8 7 6 10 10 C 1.38521 * 120.11724 * 0.02562 * 8 7 6 11 11 C 1.38339 * 120.27217 * 359.97438 * 10 8 7 12 12 C 1.50703 * 119.92104 * 179.97438 * 11 10 8 13 13 O 1.42905 * 109.46635 * 90.00865 * 12 11 10 14 14 C 1.37980 * 120.15564 * 359.70416 * 11 10 8 15 15 C 1.40072 * 120.32055 * 359.97438 * 5 4 3 16 16 C 1.36109 * 120.39956 * 0.02562 * 15 5 4 17 17 C 1.40919 * 120.05650 * 0.02562 * 16 15 5 18 18 C 1.40834 * 120.15683 * 180.02562 * 17 16 15 19 19 H 1.07999 * 119.99731 * 204.91594 * 18 17 16 20 20 C 1.39995 * 120.00509 * 24.90952 * 18 17 16 21 21 N 1.30840 * 120.00025 * 17.82448 * 20 18 17 22 22 Si 1.86795 * 120.00345 * 197.82313 * 20 18 17 23 23 H 1.48502 * 109.47379 * 0.02562 * 22 20 18 24 24 H 1.48497 * 109.47354 * 120.00401 * 22 20 18 25 25 H 1.48510 * 109.47438 * 240.00299 * 22 20 18 26 26 H 1.09003 * 109.47329 * 300.00656 * 1 2 3 27 27 H 1.09006 * 109.46823 * 60.00377 * 1 2 3 28 28 H 1.09002 * 109.47388 * 180.02562 * 1 2 3 29 29 H 1.08008 * 120.02977 * 0.02562 * 4 3 2 30 30 H 1.08008 * 120.07834 * 0.02562 * 7 6 5 31 31 H 1.07999 * 119.86346 * 179.97438 * 10 8 7 32 32 H 1.09003 * 109.47273 * 210.00430 * 12 11 10 33 33 H 1.08991 * 109.47310 * 330.00992 * 12 11 10 34 34 H 0.96696 * 113.99663 * 179.97438 * 13 12 11 35 35 H 1.07994 * 120.05762 * 180.27045 * 14 11 10 36 36 H 1.08004 * 119.79757 * 179.97438 * 15 5 4 37 37 H 1.08002 * 119.97269 * 179.97438 * 16 15 5 38 38 H 0.96996 * 120.00286 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2087 0.0000 4 6 1.2975 2.3686 -0.0005 5 6 1.9371 3.6097 -0.0011 6 6 1.1331 4.8526 0.0041 7 6 -0.2611 4.7854 0.0037 8 6 -1.0049 5.9482 0.0091 9 17 -2.7390 5.8675 0.0092 10 6 -0.3700 7.1793 0.0144 11 6 1.0115 7.2516 0.0149 12 6 1.6939 8.5952 0.0202 13 8 1.9096 9.0146 1.3692 14 6 1.7660 6.0964 0.0162 15 6 3.3358 3.6844 -0.0005 16 6 4.0862 2.5488 0.0000 17 6 3.4577 1.2875 -0.0005 18 6 4.2321 0.1112 0.0005 19 1 3.8209 -0.8063 -0.3938 20 6 5.5348 0.1311 0.5127 21 7 5.9160 1.1094 1.2934 22 14 6.7290 -1.2391 0.0816 23 1 6.0581 -2.2179 -0.8112 24 1 7.9104 -0.6661 -0.6120 25 1 7.1682 -1.9225 1.3248 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3634 -1.0277 0.0005 29 1 0.2187 2.3164 -0.0005 30 1 -0.7567 3.8257 -0.0001 31 1 -0.9560 8.0865 0.0182 32 1 2.6521 8.5181 -0.4939 33 1 1.0651 9.3242 -0.4907 34 1 2.3465 9.8735 1.4489 35 1 2.8444 6.1546 0.0210 36 1 3.8218 4.6489 -0.0014 37 1 5.1642 2.6144 0.0000 38 1 6.8185 1.1231 1.6485 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245090124.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:05:34 Heat of formation + Delta-G solvation = -56.551120 kcal Electronic energy + Delta-G solvation = -23171.404481 eV Core-core repulsion = 19583.356834 eV Total energy + Delta-G solvation = -3588.047647 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.081 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -39.46137 -38.55104 -36.80686 -36.43771 -35.84200 -34.05819 -31.83003 -30.96327 -29.01288 -28.96786 -26.67135 -25.84674 -25.22618 -22.49485 -21.81342 -20.18255 -19.95654 -17.76417 -17.48897 -16.89418 -16.12917 -15.77178 -15.39348 -14.95178 -14.72289 -14.56174 -14.17378 -13.89558 -13.72105 -13.30125 -13.15833 -12.91559 -12.49812 -12.17788 -11.99396 -11.70043 -11.50190 -11.36651 -11.25055 -11.11761 -11.08223 -10.79728 -10.67217 -10.46610 -10.13667 -10.11915 -9.80006 -9.68905 -9.41759 -8.65752 -8.44568 -7.40753 -7.15491 -6.89907 -4.39050 1.31263 1.47763 2.32842 2.64100 2.92832 2.98388 3.03733 3.06448 3.78897 3.91752 4.39360 4.45821 4.59888 4.98414 5.01678 5.22394 5.33561 5.46929 5.51032 5.56245 5.69132 5.74194 5.78254 5.90545 5.97050 6.06436 6.21237 6.34195 6.51434 6.60843 6.69448 6.84511 6.89435 7.11997 7.18126 7.21082 7.54938 7.56324 7.61770 7.90959 8.00341 8.25420 8.48089 8.60003 8.89757 9.92814 Molecular weight = 318.08amu Principal moments of inertia in cm(-1) A = 0.014999 B = 0.003618 C = 0.002961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1866.390868 B = 7736.249644 C = 9454.252387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.312 6.312 3 C 0.008 3.992 4 C -0.146 4.146 5 C -0.183 4.183 6 C 0.036 3.964 7 C -0.133 4.133 8 C -0.021 4.021 9 Cl -0.088 7.088 10 C -0.135 4.135 11 C -0.074 4.074 12 C 0.121 3.879 13 O -0.565 6.565 14 C -0.118 4.118 15 C -0.087 4.087 16 C -0.158 4.158 17 C 0.110 3.890 18 C -0.422 4.422 19 H 0.089 0.911 20 C 0.070 3.930 21 N -0.775 5.775 22 Si 0.914 3.086 23 H -0.257 1.257 24 H -0.270 1.270 25 H -0.272 1.272 26 H 0.041 0.959 27 H 0.040 0.960 28 H 0.083 0.917 29 H 0.102 0.898 30 H 0.128 0.872 31 H 0.122 0.878 32 H 0.056 0.944 33 H 0.052 0.948 34 H 0.377 0.623 35 H 0.128 0.872 36 H 0.095 0.905 37 H 0.126 0.874 38 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.125 9.077 -2.697 11.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.227 6.227 3 C -0.036 4.036 4 C -0.165 4.165 5 C -0.184 4.184 6 C 0.035 3.965 7 C -0.152 4.152 8 C -0.047 4.047 9 Cl -0.060 7.060 10 C -0.154 4.154 11 C -0.075 4.075 12 C 0.044 3.956 13 O -0.371 6.371 14 C -0.136 4.136 15 C -0.105 4.105 16 C -0.178 4.178 17 C 0.107 3.893 18 C -0.449 4.449 19 H 0.107 0.893 20 C -0.150 4.150 21 N -0.399 5.399 22 Si 0.738 3.262 23 H -0.180 1.180 24 H -0.195 1.195 25 H -0.197 1.197 26 H 0.060 0.940 27 H 0.059 0.941 28 H 0.101 0.899 29 H 0.120 0.880 30 H 0.146 0.854 31 H 0.140 0.860 32 H 0.074 0.926 33 H 0.070 0.930 34 H 0.223 0.777 35 H 0.145 0.855 36 H 0.113 0.887 37 H 0.144 0.856 38 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -6.266 8.366 -2.424 10.730 hybrid contribution 0.302 0.170 -0.149 0.377 sum -5.964 8.536 -2.573 10.726 Atomic orbital electron populations 1.22759 0.81531 1.01931 1.00042 1.85960 1.18376 1.27989 1.90376 1.19035 0.92223 0.82723 1.09659 1.20670 0.97423 0.91986 1.06462 1.17657 0.92309 0.89665 1.18800 1.18845 0.91451 0.93225 0.92951 1.21066 0.93430 0.96854 1.03819 1.20673 0.83312 0.95048 1.05675 1.98330 1.11646 1.98814 1.97159 1.20602 0.93765 0.95848 1.05136 1.19314 0.92653 0.94126 1.01367 1.20947 0.98413 0.92598 0.83672 1.86616 1.83007 1.41099 1.26348 1.21179 1.00114 0.90929 1.01409 1.20447 0.92295 0.97426 1.00381 1.20748 0.99696 0.90458 1.06885 1.17196 0.87489 0.94135 0.90483 1.19679 0.96395 0.96971 1.31887 0.89286 1.26067 0.99032 0.97238 0.92671 1.69832 1.19477 1.30124 1.20426 0.86148 0.79668 0.80884 0.79534 1.18046 1.19452 1.19714 0.94050 0.94127 0.89871 0.88043 0.85427 0.85974 0.92565 0.92956 0.77672 0.85460 0.88703 0.85618 0.90348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.56 9.81 101.05 0.99 1.55 16 2 O -0.31 -7.01 9.77 -18.68 -0.18 -7.19 16 3 C 0.01 0.18 6.71 -38.44 -0.26 -0.07 16 4 C -0.15 -3.21 8.40 -39.16 -0.33 -3.54 16 5 C -0.18 -3.97 5.89 -104.68 -0.62 -4.59 16 6 C 0.04 0.68 5.88 -104.89 -0.62 0.07 16 7 C -0.13 -2.34 9.20 -39.15 -0.36 -2.70 16 8 C -0.02 -0.33 6.31 -39.55 -0.25 -0.58 16 9 Cl -0.09 -1.23 28.95 -51.86 -1.50 -2.74 16 10 C -0.13 -2.03 9.48 -39.44 -0.37 -2.40 16 11 C -0.07 -1.13 5.50 -104.68 -0.58 -1.71 16 12 C 0.12 1.42 7.17 36.01 0.26 1.67 16 13 O -0.57 -6.92 13.64 -35.23 -0.48 -7.40 16 14 C -0.12 -2.04 9.08 -39.18 -0.36 -2.40 16 15 C -0.09 -1.94 9.35 -39.66 -0.37 -2.31 16 16 C -0.16 -3.88 8.61 -39.33 -0.34 -4.22 16 17 C 0.11 2.83 5.58 -106.66 -0.60 2.24 16 18 C -0.42 -10.74 8.70 -37.94 -0.33 -11.07 16 19 H 0.09 2.25 7.65 -52.49 -0.40 1.85 16 20 C 0.07 1.66 5.13 -17.32 -0.09 1.57 16 21 N -0.77 -18.78 10.97 55.55 0.61 -18.17 16 22 Si 0.91 17.64 29.60 -169.99 -5.03 12.61 16 23 H -0.26 -4.96 7.11 56.52 0.40 -4.56 16 24 H -0.27 -5.07 7.11 56.52 0.40 -4.67 16 25 H -0.27 -5.18 7.11 56.52 0.40 -4.78 16 26 H 0.04 0.66 7.66 -51.93 -0.40 0.26 16 27 H 0.04 0.63 7.66 -51.93 -0.40 0.23 16 28 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 29 H 0.10 1.97 4.41 -52.48 -0.23 1.74 16 30 H 0.13 2.17 6.18 -52.48 -0.32 1.84 16 31 H 0.12 1.59 8.06 -52.49 -0.42 1.16 16 32 H 0.06 0.58 8.09 -51.93 -0.42 0.16 16 33 H 0.05 0.50 8.08 -51.93 -0.42 0.08 16 34 H 0.38 2.51 9.12 45.56 0.42 2.93 16 35 H 0.13 2.10 6.17 -52.49 -0.32 1.78 16 36 H 0.09 1.88 6.16 -52.48 -0.32 1.56 16 37 H 0.13 3.13 6.17 -52.49 -0.32 2.80 16 38 H 0.29 6.21 8.30 -40.82 -0.34 5.87 16 LS Contribution 336.91 15.07 5.08 5.08 Total: -1.00 -28.49 336.91 -8.85 -37.34 By element: Atomic # 1 Polarization: 12.10 SS G_CDS: -3.13 Total: 8.97 kcal Atomic # 6 Polarization: -24.29 SS G_CDS: -4.21 Total: -28.50 kcal Atomic # 7 Polarization: -18.78 SS G_CDS: 0.61 Total: -18.17 kcal Atomic # 8 Polarization: -13.92 SS G_CDS: -0.66 Total: -14.59 kcal Atomic # 14 Polarization: 17.64 SS G_CDS: -5.03 Total: 12.61 kcal Atomic # 17 Polarization: -1.23 SS G_CDS: -1.50 Total: -2.74 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -28.49 -8.85 -37.34 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245090124.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.216 kcal (2) G-P(sol) polarization free energy of solvation -28.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.335 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds