Wall clock time and date at job start Tue Mar 31 2020 12:05:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35661 * 117.00186 * 2 1 4 4 C 1.37980 * 120.19937 * 359.97438 * 3 2 1 5 5 C 1.39625 * 119.93741 * 180.02562 * 4 3 2 6 6 C 1.48031 * 119.83860 * 180.25813 * 5 4 3 7 7 C 1.39580 * 120.13463 * 359.71911 * 6 5 4 8 8 C 1.38037 * 119.84237 * 179.97438 * 7 6 5 9 9 Cl 1.73603 * 119.94234 * 180.02562 * 8 7 6 10 10 C 1.38521 * 120.11724 * 0.02562 * 8 7 6 11 11 C 1.38339 * 120.27217 * 359.97438 * 10 8 7 12 12 C 1.50703 * 119.92104 * 179.97438 * 11 10 8 13 13 O 1.42905 * 109.46635 * 90.00865 * 12 11 10 14 14 C 1.37980 * 120.15564 * 359.70416 * 11 10 8 15 15 C 1.40072 * 120.32055 * 359.97438 * 5 4 3 16 16 C 1.36109 * 120.39956 * 0.02562 * 15 5 4 17 17 C 1.40919 * 120.05650 * 0.02562 * 16 15 5 18 18 C 1.40834 * 120.15683 * 180.02562 * 17 16 15 19 19 H 1.07999 * 119.99731 * 204.91594 * 18 17 16 20 20 C 1.39995 * 120.00509 * 24.90952 * 18 17 16 21 21 N 1.30840 * 120.00025 * 17.82448 * 20 18 17 22 22 Si 1.86795 * 120.00345 * 197.82313 * 20 18 17 23 23 H 1.48502 * 109.47379 * 0.02562 * 22 20 18 24 24 H 1.48497 * 109.47354 * 120.00401 * 22 20 18 25 25 H 1.48510 * 109.47438 * 240.00299 * 22 20 18 26 26 H 1.09003 * 109.47329 * 300.00656 * 1 2 3 27 27 H 1.09006 * 109.46823 * 60.00377 * 1 2 3 28 28 H 1.09002 * 109.47388 * 180.02562 * 1 2 3 29 29 H 1.08008 * 120.02977 * 0.02562 * 4 3 2 30 30 H 1.08008 * 120.07834 * 0.02562 * 7 6 5 31 31 H 1.07999 * 119.86346 * 179.97438 * 10 8 7 32 32 H 1.09003 * 109.47273 * 210.00430 * 12 11 10 33 33 H 1.08991 * 109.47310 * 330.00992 * 12 11 10 34 34 H 0.96696 * 113.99663 * 179.97438 * 13 12 11 35 35 H 1.07994 * 120.05762 * 180.27045 * 14 11 10 36 36 H 1.08004 * 119.79757 * 179.97438 * 15 5 4 37 37 H 1.08002 * 119.97269 * 179.97438 * 16 15 5 38 38 H 0.96996 * 120.00286 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2087 0.0000 4 6 1.2975 2.3686 -0.0005 5 6 1.9371 3.6097 -0.0011 6 6 1.1331 4.8526 0.0041 7 6 -0.2611 4.7854 0.0037 8 6 -1.0049 5.9482 0.0091 9 17 -2.7390 5.8675 0.0092 10 6 -0.3700 7.1793 0.0144 11 6 1.0115 7.2516 0.0149 12 6 1.6939 8.5952 0.0202 13 8 1.9096 9.0146 1.3692 14 6 1.7660 6.0964 0.0162 15 6 3.3358 3.6844 -0.0005 16 6 4.0862 2.5488 0.0000 17 6 3.4577 1.2875 -0.0005 18 6 4.2321 0.1112 0.0005 19 1 3.8209 -0.8063 -0.3938 20 6 5.5348 0.1311 0.5127 21 7 5.9160 1.1094 1.2934 22 14 6.7290 -1.2391 0.0816 23 1 6.0581 -2.2179 -0.8112 24 1 7.9104 -0.6661 -0.6120 25 1 7.1682 -1.9225 1.3248 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3634 -1.0277 0.0005 29 1 0.2187 2.3164 -0.0005 30 1 -0.7567 3.8257 -0.0001 31 1 -0.9560 8.0865 0.0182 32 1 2.6521 8.5181 -0.4939 33 1 1.0651 9.3242 -0.4907 34 1 2.3465 9.8735 1.4489 35 1 2.8444 6.1546 0.0210 36 1 3.8218 4.6489 -0.0014 37 1 5.1642 2.6144 0.0000 38 1 6.8185 1.1231 1.6485 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001245090124.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:05:33 Heat of formation + Delta-G solvation = -72.954643 kcal Electronic energy + Delta-G solvation = -23172.115791 eV Core-core repulsion = 19583.356834 eV Total energy + Delta-G solvation = -3588.758957 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.081 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.92306 -40.06858 -38.01725 -37.76919 -37.13735 -35.71720 -33.28040 -32.32112 -30.66975 -30.58838 -28.13698 -26.99768 -26.83039 -24.00061 -23.29553 -21.79288 -21.43421 -19.49393 -18.43719 -18.33144 -17.54929 -17.30409 -16.83593 -16.27563 -16.25001 -16.04953 -15.77259 -15.17257 -14.81574 -14.63004 -14.51750 -14.47053 -14.11144 -13.65713 -13.43726 -13.15470 -12.97038 -12.83031 -12.67726 -12.51951 -12.38341 -12.30384 -12.13647 -11.79861 -11.64095 -11.48508 -11.36662 -11.11491 -10.94791 -10.17007 -9.73406 -9.11215 -8.87960 -8.61770 -6.23110 -0.10116 0.18419 1.05334 1.10481 1.10982 1.39007 1.51131 1.54730 2.19914 2.47984 2.85762 2.88723 3.51945 3.67422 3.78687 3.97205 4.06597 4.23925 4.26980 4.31248 4.39037 4.45417 4.45883 4.52626 4.57816 4.71375 4.76546 4.89969 5.02886 5.10364 5.19162 5.25485 5.38264 5.44757 5.55082 5.71436 5.81157 5.94757 6.15196 6.21110 6.46338 6.70537 6.80839 6.95767 7.16887 8.24843 Molecular weight = 318.08amu Principal moments of inertia in cm(-1) A = 0.014999 B = 0.003618 C = 0.002961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1866.390868 B = 7736.249644 C = 9454.252387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.338 6.338 3 C -0.006 4.006 4 C -0.154 4.154 5 C -0.171 4.171 6 C 0.005 3.995 7 C -0.134 4.134 8 C -0.029 4.029 9 Cl -0.068 7.068 10 C -0.119 4.119 11 C -0.078 4.078 12 C 0.121 3.879 13 O -0.589 6.589 14 C -0.121 4.121 15 C -0.099 4.099 16 C -0.172 4.172 17 C 0.072 3.928 18 C -0.466 4.466 19 H 0.075 0.925 20 C 0.035 3.965 21 N -0.812 5.812 22 Si 0.984 3.016 23 H -0.261 1.261 24 H -0.259 1.259 25 H -0.264 1.264 26 H 0.048 0.952 27 H 0.052 0.948 28 H 0.114 0.886 29 H 0.125 0.875 30 H 0.129 0.871 31 H 0.151 0.849 32 H 0.070 0.930 33 H 0.082 0.918 34 H 0.401 0.599 35 H 0.130 0.870 36 H 0.116 0.884 37 H 0.113 0.887 38 H 0.293 0.707 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.719 11.428 -2.976 14.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.253 6.253 3 C -0.050 4.050 4 C -0.173 4.173 5 C -0.173 4.173 6 C 0.004 3.996 7 C -0.153 4.153 8 C -0.055 4.055 9 Cl -0.039 7.039 10 C -0.138 4.138 11 C -0.078 4.078 12 C 0.044 3.956 13 O -0.398 6.398 14 C -0.139 4.139 15 C -0.117 4.117 16 C -0.192 4.192 17 C 0.070 3.930 18 C -0.494 4.494 19 H 0.093 0.907 20 C -0.181 4.181 21 N -0.437 5.437 22 Si 0.804 3.196 23 H -0.184 1.184 24 H -0.183 1.183 25 H -0.189 1.189 26 H 0.066 0.934 27 H 0.070 0.930 28 H 0.132 0.868 29 H 0.143 0.857 30 H 0.147 0.853 31 H 0.168 0.832 32 H 0.088 0.912 33 H 0.100 0.900 34 H 0.251 0.749 35 H 0.148 0.852 36 H 0.133 0.867 37 H 0.131 0.869 38 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -7.881 10.752 -2.702 13.602 hybrid contribution 0.432 -0.214 -0.058 0.486 sum -7.449 10.537 -2.760 13.196 Atomic orbital electron populations 1.23092 0.78703 1.04331 1.00836 1.85910 1.21383 1.27641 1.90365 1.19223 0.92215 0.83902 1.09654 1.20931 0.98592 0.91515 1.06271 1.18040 0.92430 0.90985 1.15797 1.18801 0.92096 0.92769 0.95917 1.21125 0.92975 0.97790 1.03429 1.20779 0.84512 0.94891 1.05351 1.98341 1.09734 1.98797 1.97032 1.21037 0.94012 0.96503 1.02217 1.19759 0.92940 0.95303 0.99800 1.21013 0.99440 0.91174 0.83958 1.86535 1.83609 1.43146 1.26553 1.21346 1.00587 0.91112 1.00861 1.20668 0.92875 0.97657 1.00540 1.20731 0.99365 0.91129 1.07968 1.17556 0.88818 0.94730 0.91938 1.19707 0.98176 0.96664 1.34853 0.90688 1.26803 0.99887 0.99581 0.91872 1.69859 1.20263 1.32002 1.21537 0.85125 0.77371 0.77775 0.79294 1.18421 1.18341 1.18910 0.93384 0.92961 0.86822 0.85721 0.85286 0.83169 0.91232 0.89989 0.74870 0.85240 0.86654 0.86884 0.89628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.83 9.81 113.37 1.11 1.95 16 2 O -0.34 -15.66 9.77 -89.77 -0.88 -16.53 16 3 C -0.01 -0.28 6.71 23.01 0.15 -0.13 16 4 C -0.15 -6.87 8.40 22.54 0.19 -6.68 16 5 C -0.17 -7.49 5.89 -19.90 -0.12 -7.61 16 6 C 0.00 0.17 5.88 -20.04 -0.12 0.05 16 7 C -0.13 -4.49 9.20 22.55 0.21 -4.28 16 8 C -0.03 -0.83 6.31 22.29 0.14 -0.69 16 9 Cl -0.07 -1.69 28.95 -2.72 -0.08 -1.77 16 10 C -0.12 -3.12 9.48 22.36 0.21 -2.91 16 11 C -0.08 -2.11 5.50 -19.90 -0.11 -2.22 16 12 C 0.12 2.34 7.17 71.24 0.51 2.85 16 13 O -0.59 -12.27 13.64 -148.98 -2.03 -14.30 16 14 C -0.12 -3.96 9.08 22.53 0.20 -3.76 16 15 C -0.10 -4.55 9.35 22.22 0.21 -4.35 16 16 C -0.17 -8.93 8.61 22.43 0.19 -8.73 16 17 C 0.07 3.95 5.58 -21.18 -0.12 3.83 16 18 C -0.47 -25.33 8.70 23.33 0.20 -25.13 16 19 H 0.07 4.09 7.65 -2.91 -0.02 4.07 16 20 C 0.03 1.73 5.13 85.27 0.44 2.17 16 21 N -0.81 -41.35 10.97 21.84 0.24 -41.11 16 22 Si 0.98 37.64 29.60 68.60 2.03 39.67 16 23 H -0.26 -9.95 7.11 99.48 0.71 -9.24 16 24 H -0.26 -9.35 7.11 99.48 0.71 -8.64 16 25 H -0.26 -9.67 7.11 99.48 0.71 -8.96 16 26 H 0.05 1.49 7.66 -2.39 -0.02 1.48 16 27 H 0.05 1.57 7.66 -2.38 -0.02 1.56 16 28 H 0.11 2.97 8.14 -2.39 -0.02 2.95 16 29 H 0.13 4.80 4.41 -2.91 -0.01 4.79 16 30 H 0.13 4.17 6.18 -2.91 -0.02 4.16 16 31 H 0.15 3.11 8.06 -2.91 -0.02 3.09 16 32 H 0.07 1.17 8.09 -2.39 -0.02 1.15 16 33 H 0.08 1.12 8.08 -2.39 -0.02 1.10 16 34 H 0.40 3.87 9.12 -74.06 -0.68 3.20 16 35 H 0.13 4.10 6.17 -2.91 -0.02 4.09 16 36 H 0.12 4.65 6.16 -2.91 -0.02 4.63 16 37 H 0.11 6.01 6.17 -2.91 -0.02 5.99 16 38 H 0.29 13.30 8.30 -92.71 -0.77 12.53 16 Total: -1.00 -64.80 336.91 3.04 -61.76 By element: Atomic # 1 Polarization: 27.47 SS G_CDS: 0.45 Total: 27.92 kcal Atomic # 6 Polarization: -58.95 SS G_CDS: 3.31 Total: -55.64 kcal Atomic # 7 Polarization: -41.35 SS G_CDS: 0.24 Total: -41.11 kcal Atomic # 8 Polarization: -27.92 SS G_CDS: -2.91 Total: -30.83 kcal Atomic # 14 Polarization: 37.64 SS G_CDS: 2.03 Total: 39.67 kcal Atomic # 17 Polarization: -1.69 SS G_CDS: -0.08 Total: -1.77 kcal Total: -64.80 3.04 -61.76 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245090124.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.200 kcal (2) G-P(sol) polarization free energy of solvation -64.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.755 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds