Wall clock time and date at job start Tue Mar 31 2020 12:03:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35594 * 117.00202 * 2 1 4 4 C 1.39148 * 119.88549 * 359.72110 * 3 2 1 5 5 C 1.36419 * 120.43775 * 179.71664 * 4 3 2 6 6 C 1.40905 * 120.18708 * 0.56079 * 5 4 3 7 7 C 1.41249 * 120.11648 * 179.74097 * 6 5 4 8 8 H 1.08003 * 119.99948 * 330.10067 * 7 6 5 9 9 C 1.39864 * 119.99799 * 150.10721 * 7 6 5 10 10 N 1.30897 * 119.99970 * 161.72009 * 9 7 6 11 11 Si 1.86797 * 120.00157 * 341.71923 * 9 7 6 12 12 H 1.48499 * 109.47325 * 95.41606 * 11 9 7 13 13 H 1.48500 * 109.47391 * 215.41786 * 11 9 7 14 14 H 1.48505 * 109.46806 * 335.41439 * 11 9 7 15 15 C 1.40610 * 119.76449 * 359.72245 * 6 5 4 16 16 C 1.38599 * 119.57374 * 359.97438 * 15 6 5 17 17 C 1.48333 * 120.09847 * 179.97438 * 16 15 6 18 18 C 1.39369 * 120.11433 * 130.02854 * 17 16 15 19 19 C 1.38103 * 119.86399 * 179.97438 * 18 17 16 20 20 Cl 1.73605 * 119.95520 * 179.97438 * 19 18 17 21 21 C 1.38467 * 120.09771 * 0.02562 * 19 18 17 22 22 C 1.38293 * 120.23274 * 0.02562 * 21 19 18 23 23 C 1.50691 * 119.92926 * 179.97438 * 22 21 19 24 24 O 1.42899 * 109.47510 * 89.99779 * 23 22 21 25 25 C 1.38034 * 120.13491 * 359.69922 * 22 21 19 26 26 H 1.09010 * 109.46615 * 60.00021 * 1 2 3 27 27 H 1.09001 * 109.47705 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47175 * 300.00741 * 1 2 3 29 29 H 1.07996 * 119.78097 * 359.97438 * 4 3 2 30 30 H 1.08000 * 119.90650 * 180.25911 * 5 4 3 31 31 H 0.96992 * 120.00063 * 180.02562 * 10 9 7 32 32 H 1.08003 * 120.21610 * 180.02562 * 15 6 5 33 33 H 1.08006 * 120.07152 * 359.97438 * 18 17 16 34 34 H 1.07995 * 119.88601 * 179.97438 * 21 19 18 35 35 H 1.09004 * 109.47393 * 210.00078 * 23 22 21 36 36 H 1.09002 * 109.47477 * 329.99677 * 23 22 21 37 37 H 0.96701 * 114.00525 * 179.97438 * 24 23 22 38 38 H 1.08010 * 120.05111 * 180.28120 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0447 1.2081 0.0000 4 6 1.2845 2.3736 -0.0059 5 6 1.8921 3.5950 -0.0001 6 6 3.2982 3.6869 -0.0001 7 6 3.9257 4.9524 0.0004 8 1 3.4392 5.7965 -0.4656 9 6 5.1772 5.1121 0.6041 10 7 5.9177 6.1507 0.3105 11 14 5.7918 3.8432 1.8295 12 1 6.6586 2.8601 1.1314 13 1 6.5719 4.5217 2.8955 14 1 4.6334 3.1391 2.4359 15 6 4.0743 2.5144 -0.0001 16 6 3.4467 1.2787 0.0004 17 6 4.2542 0.0343 -0.0001 18 6 3.9850 -0.9743 0.9232 19 6 4.7397 -2.1309 0.9177 20 17 4.4069 -3.3885 2.0673 21 6 5.7621 -2.2885 -0.0026 22 6 6.0333 -1.2898 -0.9200 23 6 7.1480 -1.4684 -1.9182 24 8 6.6346 -2.0857 -3.1003 25 6 5.2814 -0.1323 -0.9268 26 1 -0.3633 0.5139 -0.8901 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8899 29 1 0.2064 2.3109 -0.0108 30 1 1.2937 4.4941 -0.0005 31 1 6.7857 6.2613 0.7289 32 1 5.1526 2.5764 0.0004 33 1 3.1879 -0.8517 1.6417 34 1 6.3503 -3.1942 -0.0036 35 1 7.5694 -0.4952 -2.1702 36 1 7.9246 -2.0998 -1.4866 37 1 7.2985 -2.2313 -3.7882 38 1 5.4915 0.6449 -1.6468 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245090467.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:03:48 Heat of formation + Delta-G solvation = -55.079555 kcal Electronic energy + Delta-G solvation = -23779.139938 eV Core-core repulsion = 20191.156103 eV Total energy + Delta-G solvation = -3587.983835 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.081 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -39.72228 -38.69154 -36.82321 -36.65936 -36.08019 -33.50350 -32.36780 -31.11771 -29.95539 -28.64494 -27.01232 -25.96678 -24.58519 -23.08113 -21.55135 -21.08336 -19.82512 -17.53364 -17.48950 -17.33103 -16.36717 -15.81062 -15.44198 -15.21259 -15.01889 -14.91402 -14.04086 -13.94120 -13.74953 -13.32328 -13.17543 -13.08306 -12.71621 -12.53653 -12.21474 -12.00754 -11.62677 -11.43153 -11.29815 -11.13179 -11.10053 -10.81951 -10.77623 -10.32536 -10.24257 -10.14312 -10.00382 -9.65069 -9.14088 -8.82501 -8.52086 -7.74918 -7.21335 -6.97020 -4.45824 1.29792 1.38181 2.23142 2.45512 2.52134 3.07776 3.16940 3.28913 3.74650 3.94592 4.09557 4.33840 4.48826 4.86540 4.96071 5.14495 5.27198 5.28460 5.40273 5.48342 5.49062 5.56281 5.60865 5.70125 5.84514 5.96523 5.98125 6.20980 6.38144 6.44842 6.55469 6.60156 6.74551 6.84635 7.00314 7.11288 7.24543 7.41701 7.52491 7.66615 7.81052 8.20232 8.31251 8.57652 8.75101 10.05850 Molecular weight = 318.08amu Principal moments of inertia in cm(-1) A = 0.010347 B = 0.005327 C = 0.004427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2705.518924 B = 5255.304790 C = 6323.324048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.323 6.323 3 C 0.015 3.985 4 C -0.158 4.158 5 C -0.164 4.164 6 C 0.071 3.929 7 C -0.449 4.449 8 H 0.091 0.909 9 C 0.086 3.914 10 N -0.810 5.810 11 Si 0.899 3.101 12 H -0.268 1.268 13 H -0.289 1.289 14 H -0.243 1.243 15 C -0.191 4.191 16 C -0.046 4.046 17 C -0.001 4.001 18 C -0.080 4.080 19 C -0.038 4.038 20 Cl -0.082 7.082 21 C -0.103 4.103 22 C -0.088 4.088 23 C 0.121 3.879 24 O -0.566 6.566 25 C -0.085 4.085 26 H 0.044 0.956 27 H 0.084 0.916 28 H 0.044 0.956 29 H 0.106 0.894 30 H 0.106 0.894 31 H 0.285 0.715 32 H 0.111 0.889 33 H 0.135 0.865 34 H 0.127 0.873 35 H 0.059 0.941 36 H 0.054 0.946 37 H 0.378 0.622 38 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.260 -13.895 -0.761 13.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.238 6.238 3 C -0.028 4.028 4 C -0.177 4.177 5 C -0.184 4.184 6 C 0.068 3.932 7 C -0.477 4.477 8 H 0.109 0.891 9 C -0.133 4.133 10 N -0.435 5.435 11 Si 0.726 3.274 12 H -0.194 1.194 13 H -0.216 1.216 14 H -0.167 1.167 15 C -0.210 4.210 16 C -0.047 4.047 17 C -0.001 4.001 18 C -0.099 4.099 19 C -0.064 4.064 20 Cl -0.053 7.053 21 C -0.122 4.122 22 C -0.088 4.088 23 C 0.044 3.956 24 O -0.371 6.371 25 C -0.104 4.104 26 H 0.063 0.937 27 H 0.103 0.897 28 H 0.063 0.937 29 H 0.124 0.876 30 H 0.124 0.876 31 H 0.095 0.905 32 H 0.129 0.871 33 H 0.153 0.847 34 H 0.145 0.855 35 H 0.077 0.923 36 H 0.073 0.927 37 H 0.225 0.775 38 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -0.023 -13.959 -0.300 13.962 hybrid contribution 0.597 -0.299 0.354 0.755 sum 0.574 -14.258 0.054 14.269 Atomic orbital electron populations 1.22777 0.80592 1.02152 1.00470 1.85889 1.19355 1.27798 1.90723 1.18449 0.90502 0.83476 1.10410 1.20513 0.97994 0.92676 1.06541 1.20734 0.94521 0.95565 1.07547 1.17615 0.91530 0.92786 0.91286 1.19346 1.00957 0.95464 1.31964 0.89075 1.26078 0.95149 0.95800 0.96233 1.69717 1.09919 1.28032 1.35821 0.86477 0.80195 0.80366 0.80387 1.19433 1.21614 1.16655 1.20954 0.98307 0.90664 1.11086 1.17621 0.89065 0.91362 1.06616 1.18772 0.94233 0.93424 0.93721 1.21149 0.98564 0.91128 0.99014 1.20699 0.99466 0.91236 0.95023 1.98336 1.95043 1.52323 1.59589 1.20763 0.97350 0.99029 0.95072 1.19357 0.98385 0.94448 0.96649 1.20937 0.92904 0.97138 0.84664 1.86597 1.40073 1.83190 1.27265 1.21303 0.94088 0.97111 0.97850 0.93711 0.89724 0.93701 0.87622 0.87587 0.90502 0.87140 0.84715 0.85465 0.92302 0.92750 0.77544 0.85086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.50 9.80 101.05 0.99 1.49 16 2 O -0.32 -6.02 8.82 -18.48 -0.16 -6.18 16 3 C 0.02 0.32 6.63 -38.44 -0.25 0.07 16 4 C -0.16 -3.19 8.95 -39.90 -0.36 -3.55 16 5 C -0.16 -3.63 9.72 -39.23 -0.38 -4.01 16 6 C 0.07 1.72 5.10 -106.85 -0.55 1.18 16 7 C -0.45 -11.73 9.55 -37.83 -0.36 -12.09 16 8 H 0.09 2.49 8.06 -52.48 -0.42 2.06 16 9 C 0.09 2.20 5.40 -17.34 -0.09 2.11 16 10 N -0.81 -21.20 13.93 55.54 0.77 -20.42 16 11 Si 0.90 20.50 24.52 -169.99 -4.17 16.34 16 12 H -0.27 -5.94 6.70 56.52 0.38 -5.56 16 13 H -0.29 -6.38 7.11 56.52 0.40 -5.98 16 14 H -0.24 -5.71 6.87 56.52 0.39 -5.32 16 15 C -0.19 -4.47 6.62 -38.55 -0.26 -4.72 16 16 C -0.05 -1.00 5.48 -104.80 -0.57 -1.57 16 17 C 0.00 -0.02 5.27 -104.91 -0.55 -0.58 16 18 C -0.08 -1.44 8.56 -39.21 -0.34 -1.77 16 19 C -0.04 -0.60 6.31 -39.55 -0.25 -0.85 16 20 Cl -0.08 -1.14 28.95 -51.86 -1.50 -2.64 16 21 C -0.10 -1.54 9.48 -39.48 -0.37 -1.91 16 22 C -0.09 -1.36 5.50 -104.68 -0.58 -1.94 16 23 C 0.12 1.45 7.16 36.00 0.26 1.71 16 24 O -0.57 -6.89 13.64 -35.23 -0.48 -7.37 16 25 C -0.09 -1.53 9.16 -39.24 -0.36 -1.89 16 26 H 0.04 0.59 7.63 -51.92 -0.40 0.20 16 27 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16 28 H 0.04 0.59 7.66 -51.93 -0.40 0.19 16 29 H 0.11 1.80 6.26 -52.49 -0.33 1.48 16 30 H 0.11 2.18 8.06 -52.49 -0.42 1.76 16 31 H 0.28 6.77 8.30 -40.82 -0.34 6.43 16 32 H 0.11 2.60 4.72 -52.48 -0.25 2.35 16 33 H 0.13 2.42 7.68 -52.48 -0.40 2.01 16 34 H 0.13 1.59 8.06 -52.49 -0.42 1.16 16 35 H 0.06 0.65 8.09 -51.93 -0.42 0.23 16 36 H 0.05 0.52 8.08 -51.93 -0.42 0.10 16 37 H 0.38 2.53 9.12 45.56 0.42 2.95 16 38 H 0.13 2.30 8.04 -52.48 -0.42 1.88 16 LS Contribution 337.12 15.07 5.08 5.08 Total: -1.00 -29.09 337.12 -7.96 -37.05 By element: Atomic # 1 Polarization: 9.97 SS G_CDS: -3.48 Total: 6.49 kcal Atomic # 6 Polarization: -24.32 SS G_CDS: -4.02 Total: -28.34 kcal Atomic # 7 Polarization: -21.20 SS G_CDS: 0.77 Total: -20.42 kcal Atomic # 8 Polarization: -12.91 SS G_CDS: -0.64 Total: -13.55 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -4.17 Total: 16.34 kcal Atomic # 17 Polarization: -1.14 SS G_CDS: -1.50 Total: -2.64 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -29.09 -7.96 -37.05 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245090467.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.030 kcal (2) G-P(sol) polarization free energy of solvation -29.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.049 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds