Wall clock time and date at job start Tue Mar 31 2020 12:03:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 S 1.65603 * 119.99793 * 2 1 4 4 O 1.42104 * 106.40274 * 311.65392 * 3 2 1 5 5 O 1.42103 * 106.39650 * 178.73612 * 3 2 1 6 6 C 1.76191 * 107.21941 * 65.19629 * 3 2 1 7 7 C 1.38043 * 120.06518 * 14.83743 * 6 3 2 8 8 C 1.38301 * 120.12119 * 180.32544 * 7 6 3 9 9 C 1.38345 * 120.24551 * 359.66869 * 8 7 6 10 10 C 1.37992 * 120.12477 * 0.03065 * 9 8 7 11 11 C 1.39326 * 120.06346 * 194.56085 * 6 3 2 12 12 C 1.48385 * 120.11564 * 359.97438 * 11 6 3 13 13 C 1.40041 * 120.82251 * 303.47444 * 12 11 6 14 14 C 1.38509 * 119.41955 * 179.97438 * 13 12 11 15 15 N 1.31473 * 121.14999 * 0.02562 * 14 13 12 16 16 C 1.33646 * 121.79419 * 0.02562 * 15 14 13 17 17 C 1.41421 * 119.77819 * 179.97438 * 16 15 14 18 18 H 1.08003 * 119.99904 * 189.37643 * 17 16 15 19 19 C 1.40037 * 120.00189 * 9.37227 * 17 16 15 20 20 N 1.30735 * 120.00045 * 194.51188 * 19 17 16 21 21 Si 1.86796 * 119.99815 * 14.50843 * 19 17 16 22 22 H 1.48500 * 109.47269 * 269.99933 * 21 19 17 23 23 H 1.48495 * 109.47352 * 30.00244 * 21 19 17 24 24 H 1.48503 * 109.47001 * 150.00011 * 21 19 17 25 25 C 1.39305 * 120.82263 * 123.73856 * 12 11 6 26 26 H 1.09000 * 109.47463 * 185.00626 * 1 2 3 27 27 H 1.09003 * 109.47058 * 305.00867 * 1 2 3 28 28 H 1.08999 * 109.47337 * 65.00521 * 1 2 3 29 29 H 0.96992 * 120.00107 * 179.97438 * 2 1 3 30 30 H 1.07999 * 119.93787 * 359.97438 * 7 6 3 31 31 H 1.08003 * 119.87689 * 179.70446 * 8 7 6 32 32 H 1.08001 * 119.93470 * 180.02562 * 9 8 7 33 33 H 1.07996 * 120.06478 * 179.97438 * 10 9 8 34 34 H 1.07995 * 120.28621 * 359.97438 * 13 12 11 35 35 H 1.08006 * 119.42271 * 179.97438 * 14 13 12 36 36 H 0.97006 * 120.00222 * 354.92110 * 20 19 17 37 37 H 1.07999 * 120.58181 * 0.02562 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 16 2.2930 1.4342 0.0000 4 8 1.7089 2.2347 -1.0185 5 8 3.6739 1.1002 0.0301 6 6 1.9423 2.2389 1.5277 7 6 1.3695 1.5323 2.5660 8 6 1.0875 2.1644 3.7634 9 6 1.3838 3.5054 3.9300 10 6 1.9622 4.2200 2.9010 11 6 2.2480 3.5882 1.6921 12 6 2.8700 4.3513 0.5818 13 6 4.0745 3.9279 0.0066 14 6 4.6292 4.6620 -1.0287 15 7 4.0448 5.7497 -1.4804 16 6 2.8954 6.1970 -0.9657 17 6 2.3041 7.3725 -1.4840 18 1 1.4624 7.8219 -0.9780 19 6 2.8099 7.9538 -2.6532 20 7 2.4658 9.1722 -2.9792 21 14 3.9765 6.9884 -3.7470 22 1 5.3763 7.2336 -3.3160 23 1 3.6718 5.5392 -3.6383 24 1 3.8089 7.4251 -5.1565 25 6 2.2730 5.5098 0.0896 26 1 -0.3634 -1.0237 0.0897 27 1 -0.3633 0.5896 0.8417 28 1 -0.3634 0.4342 -0.9314 29 1 1.9500 -0.8400 0.0004 30 1 1.1358 0.4853 2.4411 31 1 0.6349 1.6089 4.5715 32 1 1.1619 3.9939 4.8673 33 1 2.1927 5.2669 3.0320 34 1 4.5665 3.0367 0.3671 35 1 5.5584 4.3357 -1.4721 36 1 1.8040 9.6468 -2.4522 37 1 1.3461 5.8714 0.5098 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245187017.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:03:11 Heat of formation + Delta-G solvation = -22.639644 kcal Electronic energy + Delta-G solvation = -24500.452947 eV Core-core repulsion = 20948.212269 eV Total energy + Delta-G solvation = -3552.240678 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.082 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.53482 -38.21227 -36.87483 -35.56229 -35.26158 -33.91436 -32.79553 -31.32019 -30.37214 -29.18480 -26.16750 -25.52797 -23.67858 -23.16887 -21.45598 -20.76418 -19.42879 -18.43255 -17.82075 -17.28545 -16.30770 -16.07520 -15.35691 -15.04991 -14.89828 -14.74071 -14.48928 -14.32363 -13.84184 -13.56614 -13.04376 -12.94807 -12.79422 -12.59709 -12.38774 -12.19566 -12.09975 -11.74870 -11.68298 -11.56131 -11.33123 -10.74517 -10.64674 -10.62243 -9.98497 -9.79213 -9.72112 -9.39772 -9.18152 -9.11694 -8.28494 -7.98072 -7.77425 -7.26661 -4.77868 0.55037 0.81232 1.18909 2.45472 2.54236 3.08601 3.51124 3.60660 3.70163 3.87990 4.01782 4.44304 4.55603 4.64571 4.72094 4.78848 4.89723 4.90191 5.17976 5.21127 5.26664 5.50696 5.55576 5.62188 5.66683 5.74906 5.85080 6.01466 6.18355 6.28470 6.30825 6.45634 6.56903 6.78009 6.79612 6.93296 7.21202 7.31081 7.44242 7.59322 8.06639 8.27183 8.61669 9.49975 9.98421 Molecular weight = 318.08amu Principal moments of inertia in cm(-1) A = 0.017281 B = 0.005036 C = 0.004430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1619.905273 B = 5558.758911 C = 6318.593644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -1.129 6.129 3 S 2.695 3.305 4 O -0.931 6.931 5 O -0.952 6.952 6 C -0.663 4.663 7 C -0.041 4.041 8 C -0.149 4.149 9 C -0.069 4.069 10 C -0.125 4.125 11 C 0.086 3.914 12 C -0.028 4.028 13 C -0.327 4.327 14 C 0.161 3.839 15 N -0.564 5.564 16 C 0.252 3.748 17 C -0.472 4.472 18 H 0.083 0.917 19 C 0.050 3.950 20 N -0.800 5.800 21 Si 1.138 2.862 22 H -0.283 1.283 23 H -0.274 1.274 24 H -0.326 1.326 25 C -0.214 4.214 26 H 0.081 0.919 27 H 0.061 0.939 28 H 0.069 0.931 29 H 0.417 0.583 30 H 0.131 0.869 31 H 0.128 0.872 32 H 0.129 0.871 33 H 0.135 0.865 34 H 0.126 0.874 35 H 0.134 0.866 36 H 0.284 0.716 37 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.150 -16.896 11.234 20.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.889 5.889 3 S 2.783 3.217 4 O -0.920 6.920 5 O -0.942 6.942 6 C -0.749 4.749 7 C -0.060 4.060 8 C -0.168 4.168 9 C -0.087 4.087 10 C -0.144 4.144 11 C 0.085 3.915 12 C -0.034 4.034 13 C -0.350 4.350 14 C -0.001 4.001 15 N -0.282 5.282 16 C 0.129 3.871 17 C -0.503 4.503 18 H 0.101 0.899 19 C -0.172 4.172 20 N -0.421 5.421 21 Si 0.970 3.030 22 H -0.210 1.210 23 H -0.201 1.201 24 H -0.259 1.259 25 C -0.236 4.236 26 H 0.100 0.900 27 H 0.079 0.921 28 H 0.088 0.912 29 H 0.250 0.750 30 H 0.149 0.851 31 H 0.146 0.854 32 H 0.147 0.853 33 H 0.153 0.847 34 H 0.143 0.857 35 H 0.151 0.849 36 H 0.095 0.905 37 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -3.591 -15.693 8.618 18.260 hybrid contribution -1.696 -0.733 3.196 3.692 sum -5.287 -16.427 11.814 20.913 Atomic orbital electron populations 1.21539 0.78631 1.03745 1.02613 1.55525 1.16179 1.24861 1.92329 1.02181 0.73300 0.72135 0.74119 1.93659 1.78096 1.67152 1.53123 1.93584 1.30240 1.83411 1.86948 1.30937 1.16074 1.05626 1.22309 1.20749 0.94191 0.98757 0.92286 1.21183 1.02643 0.95303 0.97695 1.21353 0.94694 0.94268 0.98418 1.21440 0.99737 1.00717 0.92487 1.18538 0.89622 0.90023 0.93350 1.18793 0.95356 0.95549 0.93718 1.21658 1.00444 1.06768 1.06172 1.22046 0.96861 0.89836 0.91365 1.66798 1.12519 1.16869 1.32044 1.18511 0.87944 0.91618 0.89032 1.20747 1.14245 1.06633 1.08698 0.89906 1.27730 0.97942 0.94432 0.97097 1.70632 1.22866 1.08709 1.39887 0.82222 0.75070 0.75320 0.70417 1.21035 1.20053 1.25880 1.21610 1.01798 0.96881 1.03321 0.89996 0.92068 0.91213 0.75002 0.85088 0.85445 0.85293 0.84719 0.85653 0.84861 0.90493 0.87368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.69 10.67 59.85 0.64 1.32 16 2 N -1.13 -12.06 5.35 -16.63 -0.09 -12.15 16 3 S 2.69 45.17 4.17 -107.50 -0.45 44.72 16 4 O -0.93 -19.71 16.55 -57.17 -0.95 -20.65 16 5 O -0.95 -17.77 15.71 -57.17 -0.90 -18.67 16 6 C -0.66 -10.76 5.81 -39.25 -0.23 -10.98 16 7 C -0.04 -0.50 8.51 -39.63 -0.34 -0.84 16 8 C -0.15 -1.64 10.04 -39.52 -0.40 -2.03 16 9 C -0.07 -0.83 10.03 -39.63 -0.40 -1.23 16 10 C -0.12 -1.94 9.64 -39.25 -0.38 -2.32 16 11 C 0.09 1.61 5.44 -104.89 -0.57 1.04 16 12 C -0.03 -0.63 4.12 -104.65 -0.43 -1.06 16 13 C -0.33 -7.53 8.02 -38.81 -0.31 -7.84 16 14 C 0.16 3.86 11.17 -17.61 -0.20 3.67 16 15 N -0.56 -15.11 4.93 -11.20 -0.06 -15.16 16 16 C 0.25 6.85 6.27 -85.02 -0.53 6.31 16 17 C -0.47 -13.14 9.52 -37.70 -0.36 -13.50 16 18 H 0.08 2.27 8.06 -52.48 -0.42 1.84 16 19 C 0.05 1.39 5.52 -17.34 -0.10 1.30 16 20 N -0.80 -22.01 13.65 55.55 0.76 -21.25 16 21 Si 1.14 28.88 25.96 -169.99 -4.41 24.47 16 22 H -0.28 -7.06 7.11 56.52 0.40 -6.65 16 23 H -0.27 -7.14 6.46 56.52 0.37 -6.78 16 24 H -0.33 -8.04 7.11 56.52 0.40 -7.64 16 25 C -0.21 -5.25 9.46 -38.34 -0.36 -5.61 16 26 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.06 0.47 6.78 -51.93 -0.35 0.12 16 28 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.42 3.27 8.96 -34.47 -0.31 2.96 16 30 H 0.13 1.12 6.69 -52.49 -0.35 0.77 16 31 H 0.13 0.95 8.06 -52.48 -0.42 0.53 16 32 H 0.13 1.12 8.06 -52.49 -0.42 0.70 16 33 H 0.13 1.99 8.06 -52.49 -0.42 1.57 16 34 H 0.13 2.71 6.07 -52.49 -0.32 2.39 16 35 H 0.13 2.74 8.06 -52.48 -0.42 2.32 16 36 H 0.28 7.43 8.73 -40.82 -0.36 7.08 16 37 H 0.11 2.47 8.06 -52.49 -0.42 2.05 16 LS Contribution 323.09 15.07 4.87 4.87 Total: -1.00 -35.05 323.09 -9.08 -44.13 By element: Atomic # 1 Polarization: 5.37 SS G_CDS: -3.90 Total: 1.46 kcal Atomic # 6 Polarization: -27.81 SS G_CDS: -3.96 Total: -31.77 kcal Atomic # 7 Polarization: -49.18 SS G_CDS: 0.61 Total: -48.56 kcal Atomic # 8 Polarization: -37.48 SS G_CDS: -1.84 Total: -39.32 kcal Atomic # 14 Polarization: 28.88 SS G_CDS: -4.41 Total: 24.47 kcal Atomic # 16 Polarization: 45.17 SS G_CDS: -0.45 Total: 44.72 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -35.05 -9.08 -44.13 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245187017.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.495 kcal (2) G-P(sol) polarization free energy of solvation -35.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.135 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds