Wall clock time and date at job start Tue Mar 31 2020 12:03:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 S 1.65602 * 119.99774 * 2 1 4 4 O 1.42102 * 106.40503 * 318.59258 * 3 2 1 5 5 O 1.42109 * 106.39847 * 185.67849 * 3 2 1 6 6 C 1.76192 * 107.22022 * 72.13724 * 3 2 1 7 7 C 1.37938 * 120.07643 * 347.17521 * 6 3 2 8 8 C 1.38379 * 120.15068 * 180.02562 * 7 6 3 9 9 C 1.38420 * 120.30724 * 0.02562 * 8 7 6 10 10 C 1.37899 * 120.14830 * 359.67261 * 9 8 7 11 11 C 1.39651 * 120.07796 * 167.19314 * 6 3 2 12 12 C 1.47854 * 120.14851 * 359.97438 * 11 6 3 13 13 C 1.39300 * 120.77908 * 255.98031 * 12 11 6 14 14 N 1.31673 * 120.66032 * 179.97438 * 13 12 11 15 15 C 1.32214 * 122.50149 * 0.02562 * 14 13 12 16 16 C 1.36488 * 121.50706 * 359.97438 * 15 14 13 17 17 C 1.41112 * 119.10401 * 359.97438 * 16 15 14 18 18 C 1.40940 * 121.10578 * 179.73064 * 17 16 15 19 19 H 1.07996 * 120.00217 * 206.46623 * 18 17 16 20 20 C 1.40182 * 119.99962 * 26.45643 * 18 17 16 21 21 N 1.30685 * 119.99933 * 12.24425 * 20 18 17 22 22 Si 1.86800 * 120.00164 * 192.24421 * 20 18 17 23 23 H 1.48502 * 109.47220 * 60.00057 * 22 20 18 24 24 H 1.48496 * 109.47215 * 180.02562 * 22 20 18 25 25 H 1.48501 * 109.46997 * 300.00274 * 22 20 18 26 26 H 1.09002 * 109.47085 * 61.01756 * 1 2 3 27 27 H 1.08997 * 109.46672 * 181.01792 * 1 2 3 28 28 H 1.09002 * 109.46724 * 301.01350 * 1 2 3 29 29 H 0.96998 * 120.00000 * 180.02562 * 2 1 3 30 30 H 1.07997 * 119.92533 * 0.03791 * 7 6 3 31 31 H 1.08001 * 119.84840 * 179.97438 * 8 7 6 32 32 H 1.08005 * 119.92926 * 179.97438 * 9 8 7 33 33 H 1.08005 * 120.07872 * 180.32724 * 10 9 8 34 34 H 1.07997 * 119.67351 * 0.02562 * 13 12 11 35 35 H 1.08007 * 119.24275 * 180.02562 * 15 14 13 36 36 H 1.08000 * 120.44381 * 180.02562 * 16 15 14 37 37 H 0.97002 * 119.99998 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 16 2.2930 1.4342 0.0000 4 8 1.6082 2.2929 -0.9016 5 8 3.6685 1.1034 -0.1349 6 6 2.1067 2.1440 1.6018 7 6 1.1679 1.6386 2.4770 8 6 1.0199 2.1953 3.7352 9 6 1.8112 3.2622 4.1245 10 6 2.7580 3.7733 3.2619 11 6 2.9090 3.2198 1.9882 12 6 3.9175 3.7667 1.0556 13 6 5.2714 3.4863 1.2252 14 7 6.1676 3.9742 0.3930 15 6 5.8411 4.7436 -0.6315 16 6 4.5428 5.0785 -0.8868 17 6 3.5281 4.5904 -0.0363 18 6 2.1744 4.9144 -0.2574 19 1 1.4788 4.9208 0.5687 20 6 1.7309 5.2285 -1.5496 21 7 2.4998 4.9927 -2.5797 22 14 0.0408 5.9840 -1.7992 23 1 -0.0369 7.2750 -1.0695 24 1 -0.1874 6.2189 -3.2476 25 1 -0.9970 5.0580 -1.2788 26 1 -0.3633 0.4980 -0.8990 27 1 -0.3632 -1.0275 0.0183 28 1 -0.3633 0.5295 0.8808 29 1 1.9500 -0.8400 -0.0004 30 1 0.5470 0.8065 2.1796 31 1 0.2830 1.7960 4.4163 32 1 1.6903 3.6922 5.1078 33 1 3.3785 4.6024 3.5687 34 1 5.5892 2.8619 2.0471 35 1 6.6196 5.1149 -1.2816 36 1 4.2955 5.7080 -1.7288 37 1 2.1928 5.2097 -3.4739 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245191789.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:03:19 Heat of formation + Delta-G solvation = -7.366649 kcal Electronic energy + Delta-G solvation = -25451.627196 eV Core-core repulsion = 21900.048805 eV Total energy + Delta-G solvation = -3551.578391 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.082 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.05152 -37.74323 -36.26344 -34.92912 -34.82615 -34.03741 -32.16124 -30.78757 -30.12896 -28.32880 -25.89471 -25.82822 -22.99934 -22.58882 -21.42079 -20.43786 -18.92013 -17.59737 -17.35928 -16.74834 -15.93489 -15.58774 -15.44358 -14.61172 -14.49238 -14.44036 -14.29018 -13.92723 -13.82192 -12.95994 -12.64825 -12.52354 -12.35569 -12.30876 -12.08276 -11.86980 -11.36255 -11.29186 -11.14659 -11.06761 -11.03627 -10.96223 -10.80230 -10.28275 -10.09463 -9.76510 -9.35165 -9.32667 -8.86841 -8.48123 -7.95128 -7.76775 -7.54631 -6.75666 -4.53994 1.12344 1.37281 1.74824 2.68278 2.92017 3.06917 3.10490 3.33271 3.64976 3.94944 3.99389 4.47771 4.77491 4.96913 5.11119 5.25347 5.29565 5.40744 5.49407 5.62118 5.71470 5.76898 5.87704 5.92494 6.04823 6.20092 6.32098 6.44801 6.55924 6.71074 6.84945 6.94928 6.98000 7.18508 7.20466 7.30512 7.38524 7.53867 7.85871 8.11272 8.47141 8.75116 8.77380 9.69190 10.13934 Molecular weight = 318.08amu Principal moments of inertia in cm(-1) A = 0.010552 B = 0.008374 C = 0.006963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2652.826668 B = 3342.947369 C = 4020.317957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -1.136 6.136 3 S 2.687 3.313 4 O -0.907 6.907 5 O -0.949 6.949 6 C -0.657 4.657 7 C -0.051 4.051 8 C -0.162 4.162 9 C -0.076 4.076 10 C -0.138 4.138 11 C 0.142 3.858 12 C -0.308 4.308 13 C 0.167 3.833 14 N -0.580 5.580 15 C 0.085 3.915 16 C -0.208 4.208 17 C 0.143 3.857 18 C -0.415 4.415 19 H 0.079 0.921 20 C 0.099 3.901 21 N -0.765 5.765 22 Si 0.910 3.090 23 H -0.265 1.265 24 H -0.276 1.276 25 H -0.260 1.260 26 H 0.069 0.931 27 H 0.076 0.924 28 H 0.059 0.941 29 H 0.412 0.588 30 H 0.127 0.873 31 H 0.119 0.881 32 H 0.120 0.880 33 H 0.126 0.874 34 H 0.119 0.881 35 H 0.118 0.882 36 H 0.130 0.870 37 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.654 -6.795 6.543 12.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.894 5.894 3 S 2.775 3.225 4 O -0.896 6.896 5 O -0.939 6.939 6 C -0.743 4.743 7 C -0.070 4.070 8 C -0.181 4.181 9 C -0.094 4.094 10 C -0.157 4.157 11 C 0.140 3.860 12 C -0.314 4.314 13 C 0.007 3.993 14 N -0.295 5.295 15 C -0.061 4.061 16 C -0.230 4.230 17 C 0.135 3.865 18 C -0.444 4.444 19 H 0.097 0.903 20 C -0.124 4.124 21 N -0.388 5.388 22 Si 0.734 3.266 23 H -0.190 1.190 24 H -0.201 1.201 25 H -0.184 1.184 26 H 0.088 0.912 27 H 0.095 0.905 28 H 0.078 0.922 29 H 0.244 0.756 30 H 0.145 0.855 31 H 0.137 0.863 32 H 0.138 0.862 33 H 0.144 0.856 34 H 0.137 0.863 35 H 0.136 0.864 36 H 0.148 0.852 37 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -6.403 -6.419 5.648 10.682 hybrid contribution -1.866 0.095 0.509 1.937 sum -8.269 -6.324 6.157 12.095 Atomic orbital electron populations 1.21556 0.79414 1.03276 1.02308 1.55842 1.15700 1.25428 1.92471 1.02533 0.73513 0.72105 0.74349 1.93708 1.74388 1.62514 1.59014 1.93590 1.31254 1.83307 1.85798 1.31134 1.07713 1.11088 1.24377 1.20878 0.94848 0.97670 0.93562 1.21056 1.01529 0.98738 0.96799 1.21228 0.94321 0.95055 0.98787 1.21536 0.99442 1.00716 0.94046 1.18158 0.88655 0.87492 0.91699 1.19590 0.93491 1.13057 1.05278 1.21856 0.87956 0.94113 0.95380 1.67322 1.37610 1.17098 1.07456 1.21745 0.94943 0.95220 0.94184 1.21939 0.92269 1.05231 1.03595 1.17667 0.93738 0.86883 0.88189 1.19433 0.93608 1.37231 0.94134 0.90281 1.25803 0.99240 0.92029 0.95367 1.69679 1.37372 1.31704 1.00039 0.86333 0.82338 0.79899 0.78036 1.18977 1.20130 1.18387 0.91231 0.90513 0.92227 0.75612 0.85503 0.86292 0.86201 0.85579 0.86345 0.86407 0.85204 0.90464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.91 10.53 59.85 0.63 1.54 16 2 N -1.14 -16.20 5.69 -16.63 -0.09 -16.29 16 3 S 2.69 55.59 4.79 -107.50 -0.51 55.08 16 4 O -0.91 -21.70 14.63 -57.17 -0.84 -22.54 16 5 O -0.95 -22.83 16.98 -57.17 -0.97 -23.80 16 6 C -0.66 -13.03 5.79 -39.16 -0.23 -13.25 16 7 C -0.05 -0.80 9.23 -39.64 -0.37 -1.17 16 8 C -0.16 -2.32 10.04 -39.46 -0.40 -2.71 16 9 C -0.08 -1.14 10.03 -39.64 -0.40 -1.53 16 10 C -0.14 -2.53 9.79 -39.16 -0.38 -2.92 16 11 C 0.14 3.07 4.25 -104.89 -0.45 2.63 16 12 C -0.31 -7.63 3.67 -104.04 -0.38 -8.01 16 13 C 0.17 4.14 10.83 -17.22 -0.19 3.95 16 14 N -0.58 -14.95 10.32 -13.36 -0.14 -15.09 16 15 C 0.09 2.15 11.09 -18.02 -0.20 1.95 16 16 C -0.21 -5.52 8.72 -39.12 -0.34 -5.86 16 17 C 0.14 3.82 5.19 -106.26 -0.55 3.27 16 18 C -0.41 -10.83 6.47 -37.83 -0.24 -11.08 16 19 H 0.08 2.03 7.37 -52.49 -0.39 1.64 16 20 C 0.10 2.48 4.71 -17.31 -0.08 2.40 16 21 N -0.76 -19.74 10.83 55.56 0.60 -19.13 16 22 Si 0.91 19.09 29.58 -169.99 -5.03 14.07 16 23 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 24 H -0.28 -5.58 7.11 56.52 0.40 -5.18 16 25 H -0.26 -5.44 7.11 56.52 0.40 -5.04 16 26 H 0.07 0.85 8.05 -51.93 -0.42 0.43 16 27 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 28 H 0.06 0.61 5.51 -51.93 -0.29 0.33 16 29 H 0.41 4.82 8.96 -34.47 -0.31 4.51 16 30 H 0.13 1.56 4.72 -52.49 -0.25 1.31 16 31 H 0.12 1.28 8.06 -52.49 -0.42 0.85 16 32 H 0.12 1.38 8.06 -52.48 -0.42 0.96 16 33 H 0.13 2.16 8.06 -52.48 -0.42 1.74 16 34 H 0.12 2.64 8.06 -52.49 -0.42 2.22 16 35 H 0.12 2.62 8.06 -52.48 -0.42 2.19 16 36 H 0.13 3.43 6.20 -52.49 -0.33 3.10 16 37 H 0.28 6.68 8.29 -40.82 -0.34 6.34 16 LS Contribution 322.02 15.07 4.85 4.85 Total: -1.00 -33.71 322.02 -9.35 -43.06 By element: Atomic # 1 Polarization: 14.24 SS G_CDS: -3.64 Total: 10.60 kcal Atomic # 6 Polarization: -27.22 SS G_CDS: -3.57 Total: -30.79 kcal Atomic # 7 Polarization: -50.88 SS G_CDS: 0.37 Total: -50.52 kcal Atomic # 8 Polarization: -44.54 SS G_CDS: -1.81 Total: -46.35 kcal Atomic # 14 Polarization: 19.09 SS G_CDS: -5.03 Total: 14.07 kcal Atomic # 16 Polarization: 55.59 SS G_CDS: -0.51 Total: 55.08 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -33.71 -9.35 -43.06 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245191789.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.691 kcal (2) G-P(sol) polarization free energy of solvation -33.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.058 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds