Wall clock time and date at job start Tue Mar 31 2020 12:03:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 S 1.65602 * 119.99774 * 2 1 4 4 O 1.42102 * 106.40503 * 318.59258 * 3 2 1 5 5 O 1.42109 * 106.39847 * 185.67849 * 3 2 1 6 6 C 1.76192 * 107.22022 * 72.13724 * 3 2 1 7 7 C 1.37938 * 120.07643 * 347.17521 * 6 3 2 8 8 C 1.38379 * 120.15068 * 180.02562 * 7 6 3 9 9 C 1.38420 * 120.30724 * 0.02562 * 8 7 6 10 10 C 1.37899 * 120.14830 * 359.67261 * 9 8 7 11 11 C 1.39651 * 120.07796 * 167.19314 * 6 3 2 12 12 C 1.47854 * 120.14851 * 359.97438 * 11 6 3 13 13 C 1.39300 * 120.77908 * 255.98031 * 12 11 6 14 14 N 1.31673 * 120.66032 * 179.97438 * 13 12 11 15 15 C 1.32214 * 122.50149 * 0.02562 * 14 13 12 16 16 C 1.36488 * 121.50706 * 359.97438 * 15 14 13 17 17 C 1.41112 * 119.10401 * 359.97438 * 16 15 14 18 18 C 1.40940 * 121.10578 * 179.73064 * 17 16 15 19 19 H 1.07996 * 120.00217 * 206.46623 * 18 17 16 20 20 C 1.40182 * 119.99962 * 26.45643 * 18 17 16 21 21 N 1.30685 * 119.99933 * 12.24425 * 20 18 17 22 22 Si 1.86800 * 120.00164 * 192.24421 * 20 18 17 23 23 H 1.48502 * 109.47220 * 60.00057 * 22 20 18 24 24 H 1.48496 * 109.47215 * 180.02562 * 22 20 18 25 25 H 1.48501 * 109.46997 * 300.00274 * 22 20 18 26 26 H 1.09002 * 109.47085 * 61.01756 * 1 2 3 27 27 H 1.08997 * 109.46672 * 181.01792 * 1 2 3 28 28 H 1.09002 * 109.46724 * 301.01350 * 1 2 3 29 29 H 0.96998 * 120.00000 * 180.02562 * 2 1 3 30 30 H 1.07997 * 119.92533 * 0.03791 * 7 6 3 31 31 H 1.08001 * 119.84840 * 179.97438 * 8 7 6 32 32 H 1.08005 * 119.92926 * 179.97438 * 9 8 7 33 33 H 1.08005 * 120.07872 * 180.32724 * 10 9 8 34 34 H 1.07997 * 119.67351 * 0.02562 * 13 12 11 35 35 H 1.08007 * 119.24275 * 180.02562 * 15 14 13 36 36 H 1.08000 * 120.44381 * 180.02562 * 16 15 14 37 37 H 0.97002 * 119.99998 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 16 2.2930 1.4342 0.0000 4 8 1.6082 2.2929 -0.9016 5 8 3.6685 1.1034 -0.1349 6 6 2.1067 2.1440 1.6018 7 6 1.1679 1.6386 2.4770 8 6 1.0199 2.1953 3.7352 9 6 1.8112 3.2622 4.1245 10 6 2.7580 3.7733 3.2619 11 6 2.9090 3.2198 1.9882 12 6 3.9175 3.7667 1.0556 13 6 5.2714 3.4863 1.2252 14 7 6.1676 3.9742 0.3930 15 6 5.8411 4.7436 -0.6315 16 6 4.5428 5.0785 -0.8868 17 6 3.5281 4.5904 -0.0363 18 6 2.1744 4.9144 -0.2574 19 1 1.4788 4.9208 0.5687 20 6 1.7309 5.2285 -1.5496 21 7 2.4998 4.9927 -2.5797 22 14 0.0408 5.9840 -1.7992 23 1 -0.0369 7.2750 -1.0695 24 1 -0.1874 6.2189 -3.2476 25 1 -0.9970 5.0580 -1.2788 26 1 -0.3633 0.4980 -0.8990 27 1 -0.3632 -1.0275 0.0183 28 1 -0.3633 0.5295 0.8808 29 1 1.9500 -0.8400 -0.0004 30 1 0.5470 0.8065 2.1796 31 1 0.2830 1.7960 4.4163 32 1 1.6903 3.6922 5.1078 33 1 3.3785 4.6024 3.5687 34 1 5.5892 2.8619 2.0471 35 1 6.6196 5.1149 -1.2816 36 1 4.2955 5.7080 -1.7288 37 1 2.1928 5.2097 -3.4739 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001245191789.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:03:18 Heat of formation + Delta-G solvation = -32.311114 kcal Electronic energy + Delta-G solvation = -25452.708869 eV Core-core repulsion = 21900.048805 eV Total energy + Delta-G solvation = -3552.660064 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.082 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.66425 -39.36311 -37.95211 -36.58267 -36.10993 -35.87017 -33.76584 -32.11799 -32.00770 -30.00724 -27.80099 -26.84918 -24.59022 -23.94709 -23.31685 -22.09692 -20.35347 -19.47305 -18.78847 -18.21639 -17.48538 -17.17075 -16.96705 -16.35582 -16.11187 -15.96217 -15.67118 -15.41057 -15.30582 -14.43771 -14.26882 -14.10060 -13.97375 -13.71614 -13.55047 -13.31513 -13.15878 -12.96663 -12.83152 -12.76085 -12.68188 -12.44333 -12.21183 -11.97778 -11.76422 -11.43735 -11.16999 -10.50761 -10.19111 -10.05955 -9.90151 -9.61103 -9.37625 -8.62692 -6.49441 -0.39130 0.02824 0.41133 0.80750 1.03894 1.36085 1.47250 1.57051 2.21471 2.30504 2.68484 2.85739 2.96030 3.64208 3.83389 3.90631 3.93697 4.05962 4.18529 4.19818 4.45352 4.50015 4.52381 4.63582 4.87800 4.93739 4.97638 4.98571 5.02401 5.10855 5.24015 5.27286 5.42257 5.45846 5.54238 5.60093 5.88929 6.06180 6.15594 6.16502 6.51284 6.81204 6.83683 7.71362 8.29837 Molecular weight = 318.08amu Principal moments of inertia in cm(-1) A = 0.010552 B = 0.008374 C = 0.006963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2652.826668 B = 3342.947369 C = 4020.317957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -1.119 6.119 3 S 2.689 3.311 4 O -0.952 6.952 5 O -1.001 7.001 6 C -0.673 4.673 7 C -0.051 4.051 8 C -0.147 4.147 9 C -0.064 4.064 10 C -0.153 4.153 11 C 0.097 3.903 12 C -0.298 4.298 13 C 0.145 3.855 14 N -0.596 5.596 15 C 0.077 3.923 16 C -0.235 4.235 17 C 0.117 3.883 18 C -0.426 4.426 19 H 0.076 0.924 20 C 0.059 3.941 21 N -0.796 5.796 22 Si 0.968 3.032 23 H -0.253 1.253 24 H -0.264 1.264 25 H -0.257 1.257 26 H 0.055 0.945 27 H 0.123 0.877 28 H 0.074 0.926 29 H 0.425 0.575 30 H 0.163 0.837 31 H 0.170 0.830 32 H 0.163 0.837 33 H 0.126 0.874 34 H 0.136 0.864 35 H 0.142 0.858 36 H 0.122 0.878 37 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.878 -8.046 9.067 16.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 N -0.882 5.882 3 S 2.780 3.220 4 O -0.941 6.941 5 O -0.991 6.991 6 C -0.761 4.761 7 C -0.069 4.069 8 C -0.166 4.166 9 C -0.082 4.082 10 C -0.172 4.172 11 C 0.094 3.906 12 C -0.304 4.304 13 C -0.013 4.013 14 N -0.311 5.311 15 C -0.070 4.070 16 C -0.257 4.257 17 C 0.109 3.891 18 C -0.455 4.455 19 H 0.094 0.906 20 C -0.161 4.161 21 N -0.420 5.420 22 Si 0.788 3.212 23 H -0.177 1.177 24 H -0.188 1.188 25 H -0.181 1.181 26 H 0.074 0.926 27 H 0.141 0.859 28 H 0.093 0.907 29 H 0.261 0.739 30 H 0.181 0.819 31 H 0.188 0.812 32 H 0.181 0.819 33 H 0.143 0.857 34 H 0.154 0.846 35 H 0.159 0.841 36 H 0.140 0.860 37 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -9.606 -7.698 8.166 14.772 hybrid contribution -0.936 0.346 -0.133 1.007 sum -10.542 -7.352 8.033 15.156 Atomic orbital electron populations 1.21929 0.76972 1.06394 1.02418 1.55278 1.17040 1.23776 1.92121 1.01862 0.72574 0.72859 0.74704 1.93645 1.74779 1.64607 1.61114 1.93513 1.34527 1.84219 1.86829 1.30880 1.09370 1.11514 1.24360 1.21390 0.93674 0.98252 0.93618 1.21680 1.01135 0.97265 0.96486 1.21717 0.92266 0.94501 0.99688 1.21635 1.00943 1.01195 0.93467 1.18169 0.89871 0.89693 0.92831 1.19891 0.94344 1.11278 1.04893 1.22251 0.88532 0.94566 0.95906 1.67345 1.38194 1.17632 1.07896 1.22088 0.95307 0.95110 0.94473 1.22003 0.93101 1.06425 1.04213 1.18038 0.94304 0.87617 0.89184 1.19493 0.93346 1.38044 0.94612 0.90631 1.26640 1.02863 0.91893 0.94704 1.69737 1.39235 1.32405 1.00619 0.85465 0.77628 0.79364 0.78713 1.17737 1.18850 1.18118 0.92601 0.85871 0.90739 0.73934 0.81936 0.81235 0.81950 0.85650 0.84628 0.84110 0.86038 0.89860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.32 10.53 127.77 1.34 2.66 16 2 N -1.12 -30.13 5.69 -206.53 -1.18 -31.31 16 3 S 2.69 112.85 4.79 -56.49 -0.27 112.58 16 4 O -0.95 -46.98 14.63 -128.00 -1.87 -48.85 16 5 O -1.00 -50.27 16.98 -128.00 -2.17 -52.44 16 6 C -0.67 -26.08 5.79 22.54 0.13 -25.95 16 7 C -0.05 -1.42 9.23 22.23 0.21 -1.21 16 8 C -0.15 -3.38 10.04 22.35 0.22 -3.16 16 9 C -0.06 -1.64 10.03 22.23 0.22 -1.42 16 10 C -0.15 -5.41 9.79 22.54 0.22 -5.19 16 11 C 0.10 4.19 4.25 -20.04 -0.09 4.10 16 12 C -0.30 -15.33 3.67 -19.49 -0.07 -15.40 16 13 C 0.15 7.51 10.83 84.97 0.92 8.43 16 14 N -0.60 -31.96 10.32 -196.20 -2.02 -33.98 16 15 C 0.08 4.08 11.09 84.23 0.93 5.02 16 16 C -0.24 -13.18 8.72 22.57 0.20 -12.98 16 17 C 0.12 6.51 5.19 -20.93 -0.11 6.40 16 18 C -0.43 -22.98 6.47 23.40 0.15 -22.83 16 19 H 0.08 3.99 7.37 -2.91 -0.02 3.97 16 20 C 0.06 3.04 4.71 85.34 0.40 3.44 16 21 N -0.80 -42.72 10.83 21.87 0.24 -42.49 16 22 Si 0.97 39.13 29.58 68.60 2.03 41.16 16 23 H -0.25 -9.67 7.11 99.48 0.71 -8.96 16 24 H -0.26 -10.04 7.11 99.48 0.71 -9.34 16 25 H -0.26 -10.19 7.11 99.48 0.71 -9.48 16 26 H 0.06 1.27 8.05 -2.39 -0.02 1.25 16 27 H 0.12 1.29 8.14 -2.39 -0.02 1.27 16 28 H 0.07 1.22 5.51 -2.39 -0.01 1.21 16 29 H 0.43 9.22 8.96 -96.74 -0.87 8.36 16 30 H 0.16 3.19 4.72 -2.91 -0.01 3.18 16 31 H 0.17 2.27 8.06 -2.91 -0.02 2.25 16 32 H 0.16 2.77 8.06 -2.91 -0.02 2.75 16 33 H 0.13 4.27 8.06 -2.91 -0.02 4.25 16 34 H 0.14 6.29 8.06 -2.91 -0.02 6.26 16 35 H 0.14 6.53 8.06 -2.91 -0.02 6.50 16 36 H 0.12 6.84 6.20 -2.91 -0.02 6.83 16 37 H 0.29 14.14 8.29 -92.71 -0.77 13.37 16 Total: -1.00 -79.45 322.02 -0.30 -79.75 By element: Atomic # 1 Polarization: 33.39 SS G_CDS: 0.26 Total: 33.66 kcal Atomic # 6 Polarization: -62.77 SS G_CDS: 4.69 Total: -58.08 kcal Atomic # 7 Polarization: -104.81 SS G_CDS: -2.96 Total: -107.78 kcal Atomic # 8 Polarization: -97.25 SS G_CDS: -4.05 Total: -101.29 kcal Atomic # 14 Polarization: 39.13 SS G_CDS: 2.03 Total: 41.16 kcal Atomic # 16 Polarization: 112.85 SS G_CDS: -0.27 Total: 112.58 kcal Total: -79.45 -0.30 -79.75 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245191789.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.439 kcal (2) G-P(sol) polarization free energy of solvation -79.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.750 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds