Wall clock time and date at job start Tue Mar 31 2020 12:03:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35823 * 116.99781 * 2 1 4 4 C 1.38759 * 119.88045 * 359.97438 * 3 2 1 5 5 C 1.38357 * 120.04870 * 179.74291 * 4 3 2 6 6 O 1.35790 * 120.09988 * 180.27213 * 5 4 3 7 7 C 1.42901 * 116.99954 * 0.25460 * 6 5 4 8 8 C 1.40262 * 119.80114 * 0.52422 * 5 4 3 9 9 C 1.47739 * 120.12046 * 179.74434 * 8 5 4 10 10 C 1.40068 * 119.89225 * 310.04313 * 9 8 5 11 11 C 1.36171 * 120.10841 * 180.27992 * 10 9 8 12 12 C 1.40973 * 119.88750 * 359.42895 * 11 10 9 13 13 C 1.40966 * 120.10445 * 180.25982 * 12 11 10 14 14 H 1.08000 * 120.00100 * 330.08111 * 13 12 11 15 15 C 1.39942 * 119.99819 * 150.09159 * 13 12 11 16 16 N 1.30844 * 119.99922 * 161.73282 * 15 13 12 17 17 Si 1.86802 * 120.00186 * 341.72812 * 15 13 12 18 18 H 1.48500 * 109.46956 * 95.41977 * 17 15 13 19 19 H 1.48499 * 109.46924 * 215.41927 * 17 15 13 20 20 H 1.48493 * 109.46991 * 335.41987 * 17 15 13 21 21 C 1.40971 * 119.79050 * 0.27560 * 12 11 10 22 22 C 1.36178 * 119.88122 * 0.02562 * 21 12 11 23 23 C 1.39689 * 119.75963 * 359.47287 * 8 5 4 24 24 C 1.37824 * 119.94846 * 0.27793 * 23 8 5 25 25 Cl 1.73597 * 119.89987 * 179.97438 * 24 23 8 26 26 H 1.09001 * 109.47248 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.46705 * 299.99589 * 1 2 3 28 28 H 1.08995 * 109.47441 * 59.99257 * 1 2 3 29 29 H 1.08008 * 119.97479 * 0.02562 * 4 3 2 30 30 H 1.09006 * 109.47240 * 179.97438 * 7 6 5 31 31 H 1.08999 * 109.47170 * 299.99929 * 7 6 5 32 32 H 1.08996 * 109.47188 * 60.00266 * 7 6 5 33 33 H 1.08001 * 119.94567 * 0.02562 * 10 9 8 34 34 H 1.08002 * 120.05826 * 179.70215 * 11 10 9 35 35 H 0.97003 * 120.00192 * 179.97438 * 16 15 13 36 36 H 1.08000 * 120.05980 * 180.02562 * 21 12 11 37 37 H 1.07998 * 119.94252 * 179.97438 * 22 21 12 38 38 H 1.08004 * 120.02703 * 180.24765 * 23 8 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0456 1.2102 0.0000 4 6 1.2874 2.3723 -0.0005 5 6 1.9118 3.6070 0.0048 6 8 1.1709 4.7449 0.0099 7 6 -0.2501 4.5937 0.0150 8 6 3.3126 3.6797 -0.0003 9 6 3.9867 4.9944 -0.0003 10 6 3.6065 5.9738 -0.9267 11 6 4.2287 7.1850 -0.9343 12 6 5.2488 7.4566 0.0000 13 6 5.8923 8.7108 -0.0003 14 1 5.9933 9.2657 -0.9213 15 6 6.4004 9.2368 1.1928 16 7 7.2907 10.1950 1.1585 17 14 5.8077 8.5709 2.8344 18 1 6.7510 7.5300 3.3160 19 1 5.7438 9.6769 3.8232 20 1 4.4571 7.9764 2.6687 21 6 5.6237 6.4698 0.9343 22 6 4.9996 5.2594 0.9300 23 6 4.0679 2.5047 0.0003 24 6 3.4354 1.2801 0.0002 25 17 4.3753 -0.1794 0.0003 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 0.2089 2.3130 -0.0005 30 1 -0.7202 5.5772 0.0192 31 1 -0.5605 4.0461 -0.8749 32 1 -0.5537 4.0426 0.9051 33 1 2.8213 5.7665 -1.6387 34 1 3.9382 7.9379 -1.6521 35 1 7.6427 10.5599 1.9855 36 1 6.4043 6.6733 1.6523 37 1 5.2863 4.5025 1.6451 38 1 5.1467 2.5556 0.0004 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245724468.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:03:29 Heat of formation + Delta-G solvation = -38.893500 kcal Electronic energy + Delta-G solvation = -23528.344577 eV Core-core repulsion = 19941.062622 eV Total energy + Delta-G solvation = -3587.281955 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.081 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.51993 -38.89537 -37.84339 -36.78680 -35.81382 -33.73551 -31.57419 -30.19269 -29.77762 -29.10527 -28.03250 -26.72511 -24.80159 -22.32936 -22.15179 -21.18754 -20.15795 -18.77669 -17.50092 -17.00885 -16.45880 -16.07834 -16.04376 -15.49840 -15.24704 -14.75020 -14.26274 -14.07499 -13.71879 -13.61831 -13.23703 -13.11780 -12.70267 -12.39374 -12.24305 -11.94848 -11.82882 -11.73034 -11.53628 -11.47572 -11.24307 -10.87173 -10.81862 -10.65139 -10.24163 -10.19831 -9.88990 -9.57153 -9.19729 -8.65781 -7.98867 -7.78758 -7.17397 -7.03336 -4.50587 1.29693 1.35679 2.34232 2.56754 2.78305 3.09221 3.11783 3.20349 3.30643 3.37780 3.74860 3.95027 4.46536 4.69785 4.80391 4.92002 4.92555 5.08392 5.14369 5.16278 5.23847 5.40376 5.42360 5.59475 5.65567 5.98587 6.06611 6.09813 6.23964 6.36088 6.57455 6.66041 6.86025 6.88244 7.10054 7.12984 7.41722 7.49284 7.66258 7.79435 7.86393 8.09882 8.29342 8.62617 8.74168 9.98035 Molecular weight = 318.08amu Principal moments of inertia in cm(-1) A = 0.018338 B = 0.003671 C = 0.003312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1526.557536 B = 7625.812395 C = 8452.521316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.306 6.306 3 C 0.149 3.851 4 C -0.285 4.285 5 C 0.163 3.837 6 O -0.290 6.290 7 C 0.024 3.976 8 C -0.039 4.039 9 C -0.192 4.192 10 C -0.042 4.042 11 C -0.214 4.214 12 C 0.100 3.900 13 C -0.438 4.438 14 H 0.092 0.908 15 C 0.083 3.917 16 N -0.802 5.802 17 Si 0.913 3.087 18 H -0.269 1.269 19 H -0.291 1.291 20 H -0.242 1.242 21 C -0.243 4.243 22 C -0.052 4.052 23 C -0.047 4.047 24 C -0.095 4.095 25 Cl -0.071 7.071 26 H 0.099 0.901 27 H 0.054 0.946 28 H 0.054 0.946 29 H 0.137 0.863 30 H 0.100 0.900 31 H 0.051 0.949 32 H 0.051 0.949 33 H 0.094 0.906 34 H 0.100 0.900 35 H 0.287 0.713 36 H 0.101 0.899 37 H 0.094 0.906 38 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.196 -14.991 -0.284 19.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.219 6.219 3 C 0.102 3.898 4 C -0.305 4.305 5 C 0.117 3.883 6 O -0.202 6.202 7 C -0.071 4.071 8 C -0.040 4.040 9 C -0.193 4.193 10 C -0.060 4.060 11 C -0.233 4.233 12 C 0.097 3.903 13 C -0.465 4.465 14 H 0.110 0.890 15 C -0.137 4.137 16 N -0.425 5.425 17 Si 0.739 3.261 18 H -0.195 1.195 19 H -0.218 1.218 20 H -0.165 1.165 21 C -0.262 4.262 22 C -0.070 4.070 23 C -0.066 4.066 24 C -0.123 4.123 25 Cl -0.042 7.042 26 H 0.118 0.882 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.155 0.845 30 H 0.119 0.881 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.112 0.888 34 H 0.118 0.882 35 H 0.097 0.903 36 H 0.118 0.882 37 H 0.112 0.888 38 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -12.795 -14.870 -0.205 19.618 hybrid contribution -0.580 -0.299 0.779 1.016 sum -13.375 -15.169 0.574 20.232 Atomic orbital electron populations 1.23041 0.78673 1.03815 1.01221 1.86114 1.21043 1.26174 1.88570 1.18303 0.90106 0.84216 0.97130 1.21036 1.00108 0.91366 1.17975 1.18979 0.90878 0.84369 0.94120 1.86273 1.18044 1.28261 1.87634 1.23070 0.79500 1.03840 1.00716 1.18167 0.88514 0.93856 1.03503 1.17706 1.04491 0.92787 1.04322 1.20341 0.96892 0.92735 0.96039 1.20670 1.00629 0.97226 1.04812 1.17790 0.89281 0.92687 0.90587 1.19534 1.28466 1.01993 0.96556 0.89006 1.26238 0.91627 0.93681 1.02115 1.69707 1.19610 1.21818 1.31372 0.86279 0.82402 0.77887 0.79521 1.19498 1.21839 1.16512 1.20679 1.05132 0.94863 1.05504 1.20381 0.94381 0.96093 0.96161 1.20919 1.00435 0.88196 0.97041 1.19881 0.88244 0.88276 1.15850 1.98327 1.72269 1.36171 1.97460 0.88233 0.92781 0.92756 0.84542 0.88123 0.93014 0.93045 0.88811 0.88187 0.90277 0.88174 0.88794 0.83732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 9.81 101.05 0.99 1.21 16 2 O -0.31 -3.86 9.94 -19.18 -0.19 -4.05 16 3 C 0.15 2.12 6.69 -39.05 -0.26 1.86 16 4 C -0.29 -3.84 8.01 -39.35 -0.32 -4.15 16 5 C 0.16 2.62 6.59 -38.78 -0.26 2.36 16 6 O -0.29 -4.56 8.82 -19.08 -0.17 -4.73 16 7 C 0.02 0.25 9.81 101.05 0.99 1.24 16 8 C -0.04 -0.70 5.48 -104.71 -0.57 -1.28 16 9 C -0.19 -3.98 5.30 -104.64 -0.55 -4.53 16 10 C -0.04 -0.89 8.70 -39.64 -0.34 -1.23 16 11 C -0.21 -4.94 9.73 -39.29 -0.38 -5.33 16 12 C 0.10 2.50 5.10 -106.79 -0.55 1.95 16 13 C -0.44 -11.64 9.54 -37.91 -0.36 -12.00 16 14 H 0.09 2.54 8.06 -52.49 -0.42 2.12 16 15 C 0.08 2.15 5.40 -17.33 -0.09 2.06 16 16 N -0.80 -20.99 13.93 55.55 0.77 -20.22 16 17 Si 0.91 20.64 24.51 -169.99 -4.17 16.47 16 18 H -0.27 -5.91 6.70 56.52 0.38 -5.53 16 19 H -0.29 -6.32 7.11 56.52 0.40 -5.92 16 20 H -0.24 -5.66 6.87 56.52 0.39 -5.27 16 21 C -0.24 -5.79 7.10 -39.29 -0.28 -6.07 16 22 C -0.05 -1.12 9.43 -39.64 -0.37 -1.50 16 23 C -0.05 -0.77 9.26 -39.19 -0.36 -1.13 16 24 C -0.10 -1.45 6.33 -39.39 -0.25 -1.70 16 25 Cl -0.07 -1.00 28.48 -51.86 -1.48 -2.48 16 26 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.05 0.38 7.65 -51.93 -0.40 -0.01 16 28 H 0.05 0.38 7.65 -51.93 -0.40 -0.01 16 29 H 0.14 1.41 4.50 -52.48 -0.24 1.18 16 30 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.05 0.44 7.65 -51.93 -0.40 0.04 16 32 H 0.05 0.45 7.67 -51.93 -0.40 0.05 16 33 H 0.09 1.82 7.66 -52.49 -0.40 1.42 16 34 H 0.10 2.18 8.06 -52.49 -0.42 1.76 16 35 H 0.29 6.78 8.30 -40.82 -0.34 6.44 16 36 H 0.10 2.38 4.73 -52.49 -0.25 2.13 16 37 H 0.09 1.81 8.03 -52.49 -0.42 1.39 16 38 H 0.14 2.24 8.04 -52.48 -0.42 1.82 16 LS Contribution 332.91 15.07 5.02 5.02 Total: -1.00 -28.66 332.91 -7.36 -36.02 By element: Atomic # 1 Polarization: 6.39 SS G_CDS: -4.18 Total: 2.20 kcal Atomic # 6 Polarization: -25.27 SS G_CDS: -2.97 Total: -28.24 kcal Atomic # 7 Polarization: -20.99 SS G_CDS: 0.77 Total: -20.22 kcal Atomic # 8 Polarization: -8.42 SS G_CDS: -0.36 Total: -8.78 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -4.17 Total: 16.47 kcal Atomic # 17 Polarization: -1.00 SS G_CDS: -1.48 Total: -2.48 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -28.66 -7.36 -36.02 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245724468.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.874 kcal (2) G-P(sol) polarization free energy of solvation -28.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.020 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds