Wall clock time and date at job start Tue Mar 31 2020 12:03:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35823 * 116.99781 * 2 1 4 4 C 1.38759 * 119.88045 * 359.97438 * 3 2 1 5 5 C 1.38357 * 120.04870 * 179.74291 * 4 3 2 6 6 O 1.35790 * 120.09988 * 180.27213 * 5 4 3 7 7 C 1.42901 * 116.99954 * 0.25460 * 6 5 4 8 8 C 1.40262 * 119.80114 * 0.52422 * 5 4 3 9 9 C 1.47739 * 120.12046 * 179.74434 * 8 5 4 10 10 C 1.40068 * 119.89225 * 310.04313 * 9 8 5 11 11 C 1.36171 * 120.10841 * 180.27992 * 10 9 8 12 12 C 1.40973 * 119.88750 * 359.42895 * 11 10 9 13 13 C 1.40966 * 120.10445 * 180.25982 * 12 11 10 14 14 H 1.08000 * 120.00100 * 330.08111 * 13 12 11 15 15 C 1.39942 * 119.99819 * 150.09159 * 13 12 11 16 16 N 1.30844 * 119.99922 * 161.73282 * 15 13 12 17 17 Si 1.86802 * 120.00186 * 341.72812 * 15 13 12 18 18 H 1.48500 * 109.46956 * 95.41977 * 17 15 13 19 19 H 1.48499 * 109.46924 * 215.41927 * 17 15 13 20 20 H 1.48493 * 109.46991 * 335.41987 * 17 15 13 21 21 C 1.40971 * 119.79050 * 0.27560 * 12 11 10 22 22 C 1.36178 * 119.88122 * 0.02562 * 21 12 11 23 23 C 1.39689 * 119.75963 * 359.47287 * 8 5 4 24 24 C 1.37824 * 119.94846 * 0.27793 * 23 8 5 25 25 Cl 1.73597 * 119.89987 * 179.97438 * 24 23 8 26 26 H 1.09001 * 109.47248 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.46705 * 299.99589 * 1 2 3 28 28 H 1.08995 * 109.47441 * 59.99257 * 1 2 3 29 29 H 1.08008 * 119.97479 * 0.02562 * 4 3 2 30 30 H 1.09006 * 109.47240 * 179.97438 * 7 6 5 31 31 H 1.08999 * 109.47170 * 299.99929 * 7 6 5 32 32 H 1.08996 * 109.47188 * 60.00266 * 7 6 5 33 33 H 1.08001 * 119.94567 * 0.02562 * 10 9 8 34 34 H 1.08002 * 120.05826 * 179.70215 * 11 10 9 35 35 H 0.97003 * 120.00192 * 179.97438 * 16 15 13 36 36 H 1.08000 * 120.05980 * 180.02562 * 21 12 11 37 37 H 1.07998 * 119.94252 * 179.97438 * 22 21 12 38 38 H 1.08004 * 120.02703 * 180.24765 * 23 8 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0456 1.2102 0.0000 4 6 1.2874 2.3723 -0.0005 5 6 1.9118 3.6070 0.0048 6 8 1.1709 4.7449 0.0099 7 6 -0.2501 4.5937 0.0150 8 6 3.3126 3.6797 -0.0003 9 6 3.9867 4.9944 -0.0003 10 6 3.6065 5.9738 -0.9267 11 6 4.2287 7.1850 -0.9343 12 6 5.2488 7.4566 0.0000 13 6 5.8923 8.7108 -0.0003 14 1 5.9933 9.2657 -0.9213 15 6 6.4004 9.2368 1.1928 16 7 7.2907 10.1950 1.1585 17 14 5.8077 8.5709 2.8344 18 1 6.7510 7.5300 3.3160 19 1 5.7438 9.6769 3.8232 20 1 4.4571 7.9764 2.6687 21 6 5.6237 6.4698 0.9343 22 6 4.9996 5.2594 0.9300 23 6 4.0679 2.5047 0.0003 24 6 3.4354 1.2801 0.0002 25 17 4.3753 -0.1794 0.0003 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 0.2089 2.3130 -0.0005 30 1 -0.7202 5.5772 0.0192 31 1 -0.5605 4.0461 -0.8749 32 1 -0.5537 4.0426 0.9051 33 1 2.8213 5.7665 -1.6387 34 1 3.9382 7.9379 -1.6521 35 1 7.6427 10.5599 1.9855 36 1 6.4043 6.6733 1.6523 37 1 5.2863 4.5025 1.6451 38 1 5.1467 2.5556 0.0004 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001245724468.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:03:28 Heat of formation + Delta-G solvation = -54.480629 kcal Electronic energy + Delta-G solvation = -23529.020486 eV Core-core repulsion = 19941.062622 eV Total energy + Delta-G solvation = -3587.957864 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.081 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.63746 -39.99527 -39.44482 -37.93929 -36.99330 -35.54230 -33.13268 -31.72938 -31.13721 -30.51279 -28.83468 -27.77217 -26.32297 -23.71676 -23.48066 -22.73829 -21.77482 -19.80203 -19.38130 -18.04863 -17.92938 -17.26722 -16.97909 -16.87025 -16.40604 -15.77401 -15.66863 -15.48970 -15.34975 -15.05943 -14.63073 -14.24924 -14.13773 -14.04443 -13.77267 -13.25276 -13.09589 -12.88249 -12.63891 -12.57506 -12.41239 -12.32274 -12.27589 -11.99573 -11.89920 -11.57576 -11.43179 -11.33220 -10.95595 -9.84950 -9.57685 -9.44820 -8.92876 -8.64067 -6.45832 0.06303 0.18294 0.84198 0.97498 1.23213 1.27421 1.41526 1.49669 2.12372 2.21794 2.37300 2.45138 2.70051 3.51403 3.70116 3.85643 3.91443 4.26072 4.32255 4.34751 4.38611 4.40180 4.40835 4.41682 4.52174 4.70248 4.71878 4.75662 4.86745 4.97946 5.00453 5.05783 5.19719 5.32509 5.45993 5.64731 5.83745 5.91826 6.05592 6.16223 6.24986 6.40088 6.48160 6.74173 6.84171 8.15224 Molecular weight = 318.08amu Principal moments of inertia in cm(-1) A = 0.018338 B = 0.003671 C = 0.003312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1526.557536 B = 7625.812395 C = 8452.521316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.317 6.317 3 C 0.164 3.836 4 C -0.277 4.277 5 C 0.168 3.832 6 O -0.319 6.319 7 C 0.012 3.988 8 C -0.083 4.083 9 C -0.162 4.162 10 C -0.045 4.045 11 C -0.223 4.223 12 C 0.079 3.921 13 C -0.479 4.479 14 H 0.059 0.941 15 C 0.050 3.950 16 N -0.845 5.845 17 Si 0.964 3.036 18 H -0.258 1.258 19 H -0.276 1.276 20 H -0.255 1.255 21 C -0.251 4.251 22 C -0.064 4.064 23 C -0.040 4.040 24 C -0.112 4.112 25 Cl -0.064 7.064 26 H 0.123 0.877 27 H 0.067 0.933 28 H 0.068 0.932 29 H 0.172 0.828 30 H 0.113 0.887 31 H 0.073 0.927 32 H 0.069 0.931 33 H 0.115 0.885 34 H 0.102 0.898 35 H 0.295 0.705 36 H 0.098 0.902 37 H 0.119 0.881 38 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.300 -18.505 0.424 24.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.230 6.230 3 C 0.116 3.884 4 C -0.296 4.296 5 C 0.121 3.879 6 O -0.232 6.232 7 C -0.082 4.082 8 C -0.084 4.084 9 C -0.163 4.163 10 C -0.063 4.063 11 C -0.242 4.242 12 C 0.077 3.923 13 C -0.508 4.508 14 H 0.077 0.923 15 C -0.165 4.165 16 N -0.471 5.471 17 Si 0.787 3.213 18 H -0.183 1.183 19 H -0.203 1.203 20 H -0.179 1.179 21 C -0.270 4.270 22 C -0.082 4.082 23 C -0.059 4.059 24 C -0.140 4.140 25 Cl -0.035 7.035 26 H 0.141 0.859 27 H 0.086 0.914 28 H 0.087 0.913 29 H 0.189 0.811 30 H 0.131 0.869 31 H 0.091 0.909 32 H 0.087 0.913 33 H 0.133 0.867 34 H 0.120 0.880 35 H 0.105 0.895 36 H 0.115 0.885 37 H 0.137 0.863 38 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -15.917 -18.397 0.497 24.332 hybrid contribution 0.059 0.372 0.425 0.568 sum -15.858 -18.025 0.922 24.026 Atomic orbital electron populations 1.23452 0.75995 1.06018 1.02545 1.86128 1.23781 1.25252 1.87845 1.18451 0.89935 0.85190 0.94773 1.21262 1.01760 0.89869 1.16726 1.18999 0.90271 0.85480 0.93134 1.86231 1.20822 1.28683 1.87443 1.23435 0.76651 1.05513 1.02579 1.18047 0.89797 0.92643 1.07885 1.18089 1.02462 0.93832 1.01891 1.20569 0.97081 0.92121 0.96533 1.20849 1.00441 0.98348 1.04553 1.17912 0.90066 0.92464 0.91892 1.19464 1.31958 1.03324 0.96091 0.92304 1.26816 0.91492 0.93840 1.04347 1.69729 1.21253 1.23642 1.32451 0.85508 0.81181 0.77931 0.76641 1.18309 1.20257 1.17915 1.20772 1.05433 0.95470 1.05297 1.20689 0.94665 0.95799 0.97008 1.20871 1.00484 0.88302 0.96195 1.19948 0.89123 0.88232 1.16681 1.98328 1.72221 1.35515 1.97465 0.85875 0.91411 0.91317 0.81084 0.86869 0.90888 0.91252 0.86702 0.87968 0.89470 0.88473 0.86315 0.83723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.15 9.81 113.37 1.11 1.26 16 2 O -0.32 -6.66 9.94 -91.56 -0.91 -7.57 16 3 C 0.16 4.03 6.69 22.61 0.15 4.18 16 4 C -0.28 -6.23 8.01 22.42 0.18 -6.05 16 5 C 0.17 4.85 6.59 22.79 0.15 5.00 16 6 O -0.32 -9.04 8.82 -91.19 -0.80 -9.85 16 7 C 0.01 0.20 9.81 113.37 1.11 1.31 16 8 C -0.08 -2.77 5.48 -19.92 -0.11 -2.88 16 9 C -0.16 -6.49 5.30 -19.88 -0.11 -6.60 16 10 C -0.04 -1.87 8.70 22.23 0.19 -1.68 16 11 C -0.22 -10.51 9.73 22.46 0.22 -10.29 16 12 C 0.08 4.11 5.10 -21.27 -0.11 4.00 16 13 C -0.48 -27.16 9.54 23.35 0.22 -26.93 16 14 H 0.06 3.56 8.06 -2.91 -0.02 3.54 16 15 C 0.05 2.72 5.40 85.25 0.46 3.18 16 16 N -0.84 -46.51 13.93 21.83 0.30 -46.21 16 17 Si 0.96 43.45 24.51 68.60 1.68 45.13 16 18 H -0.26 -11.00 6.70 99.48 0.67 -10.34 16 19 H -0.28 -11.60 7.11 99.48 0.71 -10.89 16 20 H -0.26 -11.90 6.87 99.48 0.68 -11.22 16 21 C -0.25 -12.08 7.10 22.46 0.16 -11.92 16 22 C -0.06 -2.69 9.43 22.23 0.21 -2.48 16 23 C -0.04 -1.21 9.26 22.52 0.21 -1.00 16 24 C -0.11 -3.12 6.33 22.39 0.14 -2.98 16 25 Cl -0.06 -1.65 28.48 -2.72 -0.08 -1.73 16 26 H 0.12 0.80 8.14 -2.39 -0.02 0.78 16 27 H 0.07 0.59 7.65 -2.39 -0.02 0.58 16 28 H 0.07 0.59 7.65 -2.39 -0.02 0.57 16 29 H 0.17 2.55 4.50 -2.91 -0.01 2.54 16 30 H 0.11 1.55 8.14 -2.38 -0.02 1.54 16 31 H 0.07 0.89 7.65 -2.39 -0.02 0.87 16 32 H 0.07 0.89 7.67 -2.39 -0.02 0.87 16 33 H 0.12 4.27 7.66 -2.91 -0.02 4.25 16 34 H 0.10 4.64 8.06 -2.91 -0.02 4.62 16 35 H 0.29 14.53 8.30 -92.71 -0.77 13.76 16 36 H 0.10 4.67 4.73 -2.91 -0.01 4.66 16 37 H 0.12 4.38 8.03 -2.91 -0.02 4.36 16 38 H 0.15 4.26 8.04 -2.91 -0.02 4.24 16 Total: -1.00 -64.80 332.91 5.42 -59.38 By element: Atomic # 1 Polarization: 13.69 SS G_CDS: 1.03 Total: 14.72 kcal Atomic # 6 Polarization: -58.08 SS G_CDS: 4.20 Total: -53.88 kcal Atomic # 7 Polarization: -46.51 SS G_CDS: 0.30 Total: -46.21 kcal Atomic # 8 Polarization: -15.70 SS G_CDS: -1.71 Total: -17.41 kcal Atomic # 14 Polarization: 43.45 SS G_CDS: 1.68 Total: 45.13 kcal Atomic # 17 Polarization: -1.65 SS G_CDS: -0.08 Total: -1.73 kcal Total: -64.80 5.42 -59.38 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245724468.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.895 kcal (2) G-P(sol) polarization free energy of solvation -64.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds