Wall clock time and date at job start Tue Mar 31 2020 11:59:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 N 1.40314 * 126.69068 * 2 1 4 4 N 1.28750 * 109.36189 * 180.02562 * 3 2 1 5 5 C 1.34357 * 110.13119 * 359.97438 * 4 3 2 6 6 C 1.36720 * 126.69077 * 180.02562 * 2 1 3 7 7 N 1.32988 * 134.79989 * 359.96177 * 6 2 1 8 8 C 1.31598 * 120.66501 * 180.02562 * 7 6 2 9 9 N 1.32046 * 122.47533 * 359.75336 * 8 7 6 10 10 C 1.32842 * 121.26643 * 0.52666 * 9 8 7 11 11 S 1.76202 * 120.76145 * 179.75158 * 10 9 8 12 12 C 1.76205 * 99.99919 * 359.71618 * 11 10 9 13 13 N 1.32295 * 126.25419 * 0.03127 * 12 11 10 14 14 N 1.28516 * 110.20689 * 179.97438 * 13 12 11 15 15 C 1.33120 * 109.73515 * 0.02562 * 14 13 12 16 16 C 1.39776 * 126.57031 * 180.02562 * 15 14 13 17 17 H 1.07999 * 119.99778 * 186.09234 * 16 15 14 18 18 C 1.40085 * 120.00068 * 6.08484 * 16 15 14 19 19 N 1.30808 * 119.99942 * 184.12744 * 18 16 15 20 20 Si 1.86799 * 119.99976 * 4.13525 * 18 16 15 21 21 H 1.48499 * 109.47360 * 179.97438 * 20 18 16 22 22 H 1.48508 * 109.47012 * 299.99543 * 20 18 16 23 23 H 1.48501 * 109.47425 * 59.99261 * 20 18 16 24 24 N 1.36678 * 126.24701 * 180.31657 * 12 11 10 25 25 C 1.46490 * 127.15666 * 0.03639 * 24 12 11 26 26 H 1.09001 * 109.47117 * 89.97672 * 1 2 3 27 27 H 1.08999 * 109.46996 * 209.98346 * 1 2 3 28 28 H 1.09003 * 109.46858 * 329.98130 * 1 2 3 29 29 H 1.07999 * 118.76127 * 180.02562 * 8 7 6 30 30 H 0.97000 * 119.99805 * 354.84283 * 19 18 16 31 31 H 1.09000 * 109.47597 * 270.16383 * 25 24 12 32 32 H 1.09007 * 109.47123 * 30.15839 * 25 24 12 33 33 H 1.09001 * 109.47684 * 150.16045 * 25 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.3034 1.1251 0.0000 4 7 3.5325 0.7417 -0.0005 5 6 3.5981 -0.6003 -0.0004 6 6 2.2819 -1.0963 -0.0005 7 7 2.0851 -2.4116 -0.0004 8 6 3.1053 -3.2428 -0.0005 9 7 4.3586 -2.8271 -0.0054 10 6 4.6556 -1.5324 -0.0002 11 16 6.3329 -0.9924 -0.0003 12 6 7.1558 -2.5505 0.0002 13 7 6.5779 -3.7405 0.0000 14 7 7.4689 -4.6667 0.0000 15 6 8.6835 -4.1220 0.0008 16 6 9.9028 -4.8055 0.0005 17 1 10.8285 -4.2583 0.1005 18 6 9.9239 -6.2001 -0.1293 19 7 11.0578 -6.8474 -0.0486 20 14 8.3329 -7.1355 -0.4178 21 1 8.6242 -8.5881 -0.5198 22 1 7.4046 -6.8948 0.7162 23 1 7.7051 -6.6672 -1.6794 24 7 8.5079 -2.7503 0.0064 25 6 9.5538 -1.7246 0.0146 26 1 -0.3633 0.0004 -1.0277 27 1 -0.3633 -0.8901 0.5136 28 1 -0.3633 0.8899 0.5141 29 1 2.9101 -4.3050 -0.0009 30 1 11.8916 -6.3575 0.0260 31 1 9.8164 -1.4651 -1.0109 32 1 9.1885 -0.8372 0.5317 33 1 10.4349 -2.1081 0.5293 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001327700151.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:59:27 Heat of formation + Delta-G solvation = 223.057424 kcal Electronic energy + Delta-G solvation = -23155.160628 eV Core-core repulsion = 19574.619334 eV Total energy + Delta-G solvation = -3580.541295 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 318.071 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.56632 -40.99300 -39.35509 -35.17321 -34.02036 -33.66429 -33.09765 -31.15420 -30.06206 -28.01067 -26.85196 -25.82098 -25.17507 -24.00738 -22.01788 -21.51719 -20.27998 -19.14417 -18.33063 -18.26552 -17.62065 -16.71949 -16.25214 -15.28920 -15.12780 -14.75829 -14.37716 -14.25138 -13.75672 -13.48466 -13.36890 -13.26170 -12.81681 -12.68638 -12.63845 -12.18485 -12.05664 -11.97658 -11.41712 -11.14085 -10.95923 -10.68930 -9.96940 -9.93024 -9.65196 -9.62387 -9.42101 -9.03907 -8.94070 -8.69854 -8.44685 -7.51620 -7.34730 -4.94052 -0.05500 1.02604 1.24138 1.63963 1.90246 2.04466 2.82578 3.53833 3.57648 3.61027 3.64197 3.79738 3.83292 3.97876 4.01567 4.14378 4.37241 4.46516 4.59007 4.79220 5.05001 5.06710 5.11654 5.27129 5.41649 5.64778 5.83302 5.88339 6.17374 6.33053 6.59630 6.76102 7.03388 7.32160 7.47467 7.60184 7.97145 8.01041 8.26886 8.47238 9.88984 10.08065 Molecular weight = 318.07amu Principal moments of inertia in cm(-1) A = 0.025550 B = 0.003797 C = 0.003317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1095.647898 B = 7372.395890 C = 8439.015262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.104 3.896 2 N -0.386 5.386 3 N -0.005 5.005 4 N -0.184 5.184 5 C -0.112 4.112 6 C 0.319 3.681 7 N -0.543 5.543 8 C 0.369 3.631 9 N -0.465 5.465 10 C 0.240 3.760 11 S 0.225 5.775 12 C -0.004 4.004 13 N -0.183 5.183 14 N -0.416 5.416 15 C 0.349 3.651 16 C -0.486 4.486 17 H 0.084 0.916 18 C 0.064 3.936 19 N -0.803 5.803 20 Si 1.111 2.889 21 H -0.312 1.312 22 H -0.258 1.258 23 H -0.279 1.279 24 N -0.514 5.514 25 C 0.098 3.902 26 H 0.082 0.918 27 H 0.097 0.903 28 H 0.097 0.903 29 H 0.215 0.785 30 H 0.284 0.716 31 H 0.062 0.938 32 H 0.068 0.932 33 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.685 11.959 0.061 18.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.037 4.037 2 N -0.182 5.182 3 N 0.014 4.986 4 N -0.064 5.064 5 C -0.250 4.250 6 C 0.067 3.933 7 N -0.268 5.268 8 C 0.074 3.926 9 N -0.185 5.185 10 C -0.033 4.033 11 S 0.465 5.535 12 C -0.375 4.375 13 N -0.028 5.028 14 N -0.268 5.268 15 C 0.108 3.892 16 C -0.526 4.526 17 H 0.102 0.898 18 C -0.159 4.159 19 N -0.426 5.426 20 Si 0.940 3.060 21 H -0.242 1.242 22 H -0.183 1.183 23 H -0.205 1.205 24 N -0.217 5.217 25 C -0.046 4.046 26 H 0.101 0.899 27 H 0.115 0.885 28 H 0.116 0.884 29 H 0.231 0.769 30 H 0.095 0.905 31 H 0.080 0.920 32 H 0.086 0.914 33 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -15.020 11.197 -0.074 18.735 hybrid contribution 1.389 1.245 0.177 1.874 sum -13.631 12.442 0.103 18.456 Atomic orbital electron populations 1.22042 0.72024 1.05341 1.04275 1.49899 1.08091 1.02316 1.57920 1.81826 0.93633 1.05854 1.17281 1.74422 1.11666 1.09766 1.10543 1.20385 0.95078 0.91739 1.17758 1.19304 0.88411 0.89408 0.96225 1.67597 1.37631 0.99014 1.22547 1.25375 0.81753 1.00073 0.85399 1.69695 1.21334 1.11070 1.16438 1.23334 0.98329 0.90506 0.91124 1.83723 0.88315 0.98527 1.82886 1.25492 0.85086 0.99878 1.27032 1.74772 1.24339 0.93610 1.10041 1.74184 0.95968 1.21492 1.35189 1.21733 0.96104 0.78216 0.93182 1.19460 0.90382 0.94477 1.48307 0.89798 1.27420 1.05055 0.94756 0.88702 1.70678 0.99698 1.40474 1.31748 0.82720 0.71265 0.71424 0.80639 1.24166 1.18303 1.20526 1.45794 1.03802 1.07027 1.65051 1.21579 0.90869 0.90022 1.02143 0.89903 0.88455 0.88442 0.76906 0.90452 0.91988 0.91358 0.90017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.72 11.54 59.85 0.69 1.41 16 2 N -0.39 -4.76 4.09 -67.25 -0.28 -5.04 16 3 N 0.00 -0.06 13.73 60.35 0.83 0.77 16 4 N -0.18 -2.87 12.36 32.18 0.40 -2.47 16 5 C -0.11 -1.82 7.11 -84.82 -0.60 -2.42 16 6 C 0.32 4.72 8.11 -156.12 -1.27 3.45 16 7 N -0.54 -7.80 10.47 -13.97 -0.15 -7.95 16 8 C 0.37 5.47 12.25 -92.11 -1.13 4.34 16 9 N -0.47 -8.46 7.33 -13.06 -0.10 -8.55 16 10 C 0.24 4.18 7.04 -16.09 -0.11 4.07 16 11 S 0.23 3.83 22.04 -107.50 -2.37 1.46 16 12 C 0.00 -0.09 8.05 -87.35 -0.70 -0.79 16 13 N -0.18 -4.51 9.41 30.88 0.29 -4.22 16 14 N -0.42 -11.09 7.52 31.25 0.23 -10.85 16 15 C 0.35 8.93 7.27 -154.85 -1.13 7.80 16 16 C -0.49 -12.55 9.50 -38.31 -0.36 -12.92 16 17 H 0.08 2.09 7.46 -52.49 -0.39 1.70 16 18 C 0.06 1.67 5.52 -17.29 -0.10 1.58 16 19 N -0.80 -20.95 13.65 55.56 0.76 -20.20 16 20 Si 1.11 27.11 25.90 -169.99 -4.40 22.71 16 21 H -0.31 -7.34 7.11 56.52 0.40 -6.94 16 22 H -0.26 -6.44 6.76 56.52 0.38 -6.06 16 23 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 24 N -0.51 -11.36 3.26 -123.22 -0.40 -11.76 16 25 C 0.10 1.62 10.88 59.84 0.65 2.27 16 26 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.21 2.45 8.06 -52.49 -0.42 2.02 16 30 H 0.28 7.03 8.72 -40.82 -0.36 6.67 16 31 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 32 H 0.07 0.94 7.85 -51.93 -0.41 0.53 16 33 H 0.08 1.31 7.48 -51.93 -0.39 0.92 16 LS Contribution 310.14 15.07 4.67 4.67 Total: -1.00 -32.56 310.14 -7.04 -39.60 By element: Atomic # 1 Polarization: -4.50 SS G_CDS: -2.47 Total: -6.97 kcal Atomic # 6 Polarization: 12.86 SS G_CDS: -4.06 Total: 8.80 kcal Atomic # 7 Polarization: -71.87 SS G_CDS: 1.59 Total: -70.27 kcal Atomic # 14 Polarization: 27.11 SS G_CDS: -4.40 Total: 22.71 kcal Atomic # 16 Polarization: 3.83 SS G_CDS: -2.37 Total: 1.46 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -32.56 -7.04 -39.60 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327700151.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 262.659 kcal (2) G-P(sol) polarization free energy of solvation -32.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 230.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.602 kcal (6) G-S(sol) free energy of system = (1) + (5) 223.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds