Wall clock time and date at job start Tue Mar 31 2020 11:59:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 N 1.40314 * 126.69068 * 2 1 4 4 N 1.28750 * 109.36189 * 180.02562 * 3 2 1 5 5 C 1.34357 * 110.13119 * 359.97438 * 4 3 2 6 6 C 1.36720 * 126.69077 * 180.02562 * 2 1 3 7 7 N 1.32988 * 134.79989 * 359.96177 * 6 2 1 8 8 C 1.31598 * 120.66501 * 180.02562 * 7 6 2 9 9 N 1.32046 * 122.47533 * 359.75336 * 8 7 6 10 10 C 1.32842 * 121.26643 * 0.52666 * 9 8 7 11 11 S 1.76202 * 120.76145 * 179.75158 * 10 9 8 12 12 C 1.76205 * 99.99919 * 359.71618 * 11 10 9 13 13 N 1.32295 * 126.25419 * 0.03127 * 12 11 10 14 14 N 1.28516 * 110.20689 * 179.97438 * 13 12 11 15 15 C 1.33120 * 109.73515 * 0.02562 * 14 13 12 16 16 C 1.39776 * 126.57031 * 180.02562 * 15 14 13 17 17 H 1.07999 * 119.99778 * 186.09234 * 16 15 14 18 18 C 1.40085 * 120.00068 * 6.08484 * 16 15 14 19 19 N 1.30808 * 119.99942 * 184.12744 * 18 16 15 20 20 Si 1.86799 * 119.99976 * 4.13525 * 18 16 15 21 21 H 1.48499 * 109.47360 * 179.97438 * 20 18 16 22 22 H 1.48508 * 109.47012 * 299.99543 * 20 18 16 23 23 H 1.48501 * 109.47425 * 59.99261 * 20 18 16 24 24 N 1.36678 * 126.24701 * 180.31657 * 12 11 10 25 25 C 1.46490 * 127.15666 * 0.03639 * 24 12 11 26 26 H 1.09001 * 109.47117 * 89.97672 * 1 2 3 27 27 H 1.08999 * 109.46996 * 209.98346 * 1 2 3 28 28 H 1.09003 * 109.46858 * 329.98130 * 1 2 3 29 29 H 1.07999 * 118.76127 * 180.02562 * 8 7 6 30 30 H 0.97000 * 119.99805 * 354.84283 * 19 18 16 31 31 H 1.09000 * 109.47597 * 270.16383 * 25 24 12 32 32 H 1.09007 * 109.47123 * 30.15839 * 25 24 12 33 33 H 1.09001 * 109.47684 * 150.16045 * 25 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.3034 1.1251 0.0000 4 7 3.5325 0.7417 -0.0005 5 6 3.5981 -0.6003 -0.0004 6 6 2.2819 -1.0963 -0.0005 7 7 2.0851 -2.4116 -0.0004 8 6 3.1053 -3.2428 -0.0005 9 7 4.3586 -2.8271 -0.0054 10 6 4.6556 -1.5324 -0.0002 11 16 6.3329 -0.9924 -0.0003 12 6 7.1558 -2.5505 0.0002 13 7 6.5779 -3.7405 0.0000 14 7 7.4689 -4.6667 0.0000 15 6 8.6835 -4.1220 0.0008 16 6 9.9028 -4.8055 0.0005 17 1 10.8285 -4.2583 0.1005 18 6 9.9239 -6.2001 -0.1293 19 7 11.0578 -6.8474 -0.0486 20 14 8.3329 -7.1355 -0.4178 21 1 8.6242 -8.5881 -0.5198 22 1 7.4046 -6.8948 0.7162 23 1 7.7051 -6.6672 -1.6794 24 7 8.5079 -2.7503 0.0064 25 6 9.5538 -1.7246 0.0146 26 1 -0.3633 0.0004 -1.0277 27 1 -0.3633 -0.8901 0.5136 28 1 -0.3633 0.8899 0.5141 29 1 2.9101 -4.3050 -0.0009 30 1 11.8916 -6.3575 0.0260 31 1 9.8164 -1.4651 -1.0109 32 1 9.1885 -0.8372 0.5317 33 1 10.4349 -2.1081 0.5293 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001327700151.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:59:26 Heat of formation + Delta-G solvation = 202.576551 kcal Electronic energy + Delta-G solvation = -23156.048746 eV Core-core repulsion = 19574.619334 eV Total energy + Delta-G solvation = -3581.429412 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 318.071 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.71105 -42.80566 -40.54241 -36.22917 -35.90896 -35.36369 -34.25032 -32.34072 -31.92420 -28.82972 -28.42459 -27.34380 -26.63872 -25.18057 -23.37843 -23.10400 -22.01563 -20.28569 -20.16915 -19.49308 -18.92785 -17.80638 -17.66153 -16.91758 -16.79251 -15.95416 -15.74544 -15.57523 -15.38259 -14.95062 -14.62721 -14.32944 -14.19181 -14.14961 -13.77855 -13.57585 -13.17032 -13.15458 -13.04625 -12.82169 -12.57183 -12.08342 -11.85233 -11.43978 -11.33679 -11.18019 -10.77875 -10.64416 -10.40747 -10.32621 -10.23704 -9.46997 -8.87850 -6.86122 -1.25241 -0.17300 -0.12846 0.50851 0.65973 0.73326 1.00467 1.59488 1.67487 1.99043 2.22107 2.23101 2.39418 2.45808 2.50946 2.70034 2.87018 3.09088 3.43461 3.51956 3.94894 4.07707 4.31889 4.36913 4.51868 4.54491 4.60107 4.61450 4.71622 4.88137 5.11287 5.24985 5.39492 5.60464 5.73195 6.03718 6.41422 6.46001 6.59549 6.81301 7.94810 8.23542 Molecular weight = 318.07amu Principal moments of inertia in cm(-1) A = 0.025550 B = 0.003797 C = 0.003317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1095.647898 B = 7372.395890 C = 8439.015262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.090 3.910 2 N -0.370 5.370 3 N 0.005 4.995 4 N -0.203 5.203 5 C -0.120 4.120 6 C 0.306 3.694 7 N -0.527 5.527 8 C 0.364 3.636 9 N -0.496 5.496 10 C 0.222 3.778 11 S 0.270 5.730 12 C 0.012 3.988 13 N -0.218 5.218 14 N -0.446 5.446 15 C 0.330 3.670 16 C -0.504 4.504 17 H 0.084 0.916 18 C 0.042 3.958 19 N -0.822 5.822 20 Si 1.144 2.856 21 H -0.301 1.301 22 H -0.272 1.272 23 H -0.292 1.292 24 N -0.514 5.514 25 C 0.087 3.913 26 H 0.103 0.897 27 H 0.109 0.891 28 H 0.123 0.877 29 H 0.241 0.759 30 H 0.286 0.714 31 H 0.081 0.919 32 H 0.099 0.901 33 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.808 14.009 0.036 21.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.168 5.168 3 N 0.023 4.977 4 N -0.083 5.083 5 C -0.257 4.257 6 C 0.053 3.947 7 N -0.251 5.251 8 C 0.070 3.930 9 N -0.216 5.216 10 C -0.051 4.051 11 S 0.509 5.491 12 C -0.361 4.361 13 N -0.060 5.060 14 N -0.298 5.298 15 C 0.085 3.915 16 C -0.545 4.545 17 H 0.102 0.898 18 C -0.178 4.178 19 N -0.447 5.447 20 Si 0.973 3.027 21 H -0.231 1.231 22 H -0.198 1.198 23 H -0.220 1.220 24 N -0.215 5.215 25 C -0.055 4.055 26 H 0.121 0.879 27 H 0.127 0.873 28 H 0.142 0.858 29 H 0.257 0.743 30 H 0.098 0.902 31 H 0.099 0.901 32 H 0.118 0.882 33 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -17.180 13.251 -0.098 21.697 hybrid contribution 1.702 0.933 0.186 1.950 sum -15.478 14.184 0.088 20.994 Atomic orbital electron populations 1.22584 0.68761 1.07283 1.06220 1.50326 1.09611 1.00955 1.55867 1.81745 0.93512 1.06479 1.15965 1.74443 1.12427 1.09419 1.11963 1.20426 0.95393 0.92031 1.17835 1.19531 0.88573 0.89955 0.96664 1.67694 1.37088 0.98798 1.21538 1.25883 0.80927 1.01257 0.84958 1.69651 1.23176 1.11606 1.17179 1.23433 0.98769 0.90892 0.92008 1.83512 0.87555 0.94485 1.83556 1.26429 0.85352 1.01603 1.22675 1.74731 1.24302 0.94336 1.12635 1.74065 0.96710 1.23114 1.35866 1.21797 0.95817 0.79879 0.94024 1.19436 0.90624 0.94548 1.49868 0.89752 1.27812 1.05765 0.95489 0.88756 1.70673 0.99879 1.40607 1.33553 0.82226 0.69845 0.71423 0.79208 1.23091 1.19826 1.21955 1.46145 1.05016 1.07001 1.63305 1.21981 0.89862 0.89672 1.03997 0.87881 0.87284 0.85822 0.74291 0.90235 0.90052 0.88217 0.89636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.90 11.54 127.77 1.47 2.38 16 2 N -0.37 -8.04 4.09 -366.68 -1.50 -9.54 16 3 N 0.00 0.12 13.73 37.02 0.51 0.63 16 4 N -0.20 -5.92 12.36 -52.09 -0.64 -6.56 16 5 C -0.12 -3.67 7.11 40.01 0.28 -3.39 16 6 C 0.31 8.37 8.11 134.02 1.09 9.45 16 7 N -0.53 -14.03 10.47 -198.11 -2.07 -16.11 16 8 C 0.36 10.30 12.25 180.87 2.22 12.51 16 9 N -0.50 -17.62 7.33 -195.24 -1.43 -19.05 16 10 C 0.22 7.49 7.04 85.21 0.60 8.09 16 11 S 0.27 8.73 22.04 -56.49 -1.25 7.49 16 12 C 0.01 0.53 8.05 179.21 1.44 1.97 16 13 N -0.22 -10.73 9.41 -56.22 -0.53 -11.26 16 14 N -0.45 -24.12 7.52 -55.04 -0.41 -24.54 16 15 C 0.33 17.03 7.27 133.24 0.97 18.00 16 16 C -0.50 -26.44 9.50 23.09 0.22 -26.22 16 17 H 0.08 4.27 7.46 -2.91 -0.02 4.25 16 18 C 0.04 2.24 5.52 85.29 0.47 2.71 16 19 N -0.82 -43.51 13.65 21.86 0.30 -43.21 16 20 Si 1.14 56.55 25.90 68.60 1.78 58.33 16 21 H -0.30 -14.08 7.11 99.48 0.71 -13.38 16 22 H -0.27 -13.91 6.76 99.48 0.67 -13.24 16 23 H -0.29 -14.88 7.11 99.48 0.71 -14.17 16 24 N -0.51 -22.26 3.26 -543.74 -1.77 -24.03 16 25 C 0.09 2.71 10.88 127.77 1.39 4.10 16 26 H 0.10 0.71 8.14 -2.39 -0.02 0.69 16 27 H 0.11 0.92 8.14 -2.39 -0.02 0.90 16 28 H 0.12 0.65 8.14 -2.39 -0.02 0.63 16 29 H 0.24 5.15 8.06 -2.91 -0.02 5.12 16 30 H 0.29 14.41 8.72 -92.71 -0.81 13.60 16 31 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 32 H 0.10 2.45 7.85 -2.38 -0.02 2.44 16 33 H 0.08 2.62 7.48 -2.39 -0.02 2.60 16 Total: -1.00 -70.84 310.14 4.25 -66.59 By element: Atomic # 1 Polarization: -9.46 SS G_CDS: 1.12 Total: -8.35 kcal Atomic # 6 Polarization: 19.45 SS G_CDS: 10.15 Total: 29.60 kcal Atomic # 7 Polarization: -146.10 SS G_CDS: -7.55 Total: -153.66 kcal Atomic # 14 Polarization: 56.55 SS G_CDS: 1.78 Total: 58.33 kcal Atomic # 16 Polarization: 8.73 SS G_CDS: -1.25 Total: 7.49 kcal Total: -70.84 4.25 -66.59 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327700151.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 269.163 kcal (2) G-P(sol) polarization free energy of solvation -70.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 198.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.586 kcal (6) G-S(sol) free energy of system = (1) + (5) 202.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds