Wall clock time and date at job start Tue Mar 31 2020 11:16:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.33636 * 126.04164 * 2 1 4 4 N 1.31781 * 114.50222 * 179.97438 * 3 2 1 5 5 C 1.29025 * 117.12558 * 0.02562 * 4 3 2 6 6 C 1.50696 * 124.91783 * 179.97438 * 5 4 3 7 7 C 1.50705 * 109.47228 * 90.01914 * 6 5 4 8 8 O 1.21282 * 119.99778 * 0.02562 * 7 6 5 9 9 N 1.34781 * 119.99900 * 180.02562 * 7 6 5 10 10 C 1.39985 * 119.99738 * 175.49467 * 9 7 6 11 11 C 1.38918 * 120.00398 * 214.84672 * 10 9 7 12 12 C 1.38001 * 120.00265 * 179.79185 * 11 10 9 13 13 C 1.38908 * 120.00013 * 0.46151 * 12 11 10 14 14 O 1.35778 * 119.99741 * 179.77030 * 13 12 11 15 15 C 1.34808 * 116.99786 * 185.36819 * 14 13 12 16 16 H 1.08006 * 120.00519 * 354.95831 * 15 14 13 17 17 C 1.38629 * 120.00224 * 174.96181 * 15 14 13 18 18 N 1.31574 * 119.99875 * 359.97438 * 17 15 14 19 19 Si 1.86806 * 120.00499 * 179.97438 * 17 15 14 20 20 H 1.48497 * 109.46880 * 59.99931 * 19 17 15 21 21 H 1.48498 * 109.47355 * 180.02562 * 19 17 15 22 22 H 1.48501 * 109.47047 * 300.00426 * 19 17 15 23 23 C 1.38905 * 119.99967 * 359.79305 * 13 12 11 24 24 C 1.38004 * 120.00534 * 359.97438 * 23 13 12 25 25 S 1.70978 * 110.16762 * 359.71998 * 5 4 3 26 26 H 1.08994 * 109.46606 * 89.99931 * 1 2 3 27 27 H 1.08996 * 109.46907 * 329.99676 * 1 2 3 28 28 H 1.09001 * 109.46999 * 209.99932 * 1 2 3 29 29 H 1.07998 * 122.74636 * 0.02562 * 3 2 1 30 30 H 1.08998 * 109.47812 * 210.02443 * 6 5 4 31 31 H 1.09004 * 109.47252 * 330.01868 * 6 5 4 32 32 H 0.96996 * 119.99674 * 355.49107 * 9 7 6 33 33 H 1.08011 * 119.99777 * 0.02562 * 11 10 9 34 34 H 1.08000 * 119.99843 * 180.23214 * 12 11 10 35 35 H 0.97001 * 120.00114 * 179.97438 * 18 17 15 36 36 H 1.08011 * 119.99526 * 179.97438 * 23 13 12 37 37 H 1.08002 * 119.99852 * 179.97438 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2933 1.0806 0.0000 4 7 3.5845 0.8170 0.0005 5 6 3.9312 -0.4258 0.0005 6 6 5.3532 -0.9247 0.0005 7 6 5.8270 -1.0915 1.4213 8 8 5.0830 -0.8314 2.3431 9 7 7.0776 -1.5298 1.6676 10 6 7.5498 -1.5951 2.9837 11 6 8.8856 -1.3281 3.2565 12 6 9.3501 -1.3883 4.5546 13 6 8.4843 -1.7252 5.5873 14 8 8.9425 -1.7890 6.8638 15 6 8.0804 -2.2288 7.8022 16 1 7.0533 -2.4337 7.5385 17 6 8.5121 -2.4181 9.1059 18 7 9.7635 -2.1690 9.4272 19 14 7.3174 -3.0269 10.4065 20 1 6.7865 -4.3553 10.0079 21 1 8.0211 -3.1450 11.7088 22 1 6.1944 -2.0639 10.5367 23 6 7.1499 -1.9974 5.3139 24 6 6.6841 -1.9325 4.0164 25 16 2.5436 -1.4249 0.0075 26 1 -0.3632 0.0000 -1.0276 27 1 -0.3633 0.8899 0.5139 28 1 -0.3633 -0.8900 0.5138 29 1 1.9026 2.0874 0.0004 30 1 5.4016 -1.8845 -0.5138 31 1 5.9907 -0.2050 -0.5130 32 1 7.6502 -1.8000 0.9328 33 1 9.5596 -1.0697 2.4531 34 1 10.3877 -1.1771 4.7671 35 1 10.0655 -2.3011 10.3395 36 1 6.4768 -2.2597 6.1168 37 1 5.6466 -2.1445 3.8039 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001361694793.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:16:13 Heat of formation + Delta-G solvation = 11.675629 kcal Electronic energy + Delta-G solvation = -22480.024319 eV Core-core repulsion = 18929.271663 eV Total energy + Delta-G solvation = -3550.752656 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.082 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.39359 -39.64421 -38.61582 -36.53203 -34.00593 -33.54300 -32.19582 -31.05850 -30.19180 -27.97690 -26.20813 -25.23977 -23.98689 -22.43117 -21.65474 -20.29352 -19.48263 -18.38123 -18.03204 -17.57376 -16.91440 -16.39357 -15.37454 -15.34642 -14.89880 -14.52051 -14.27231 -14.07938 -13.82589 -13.57738 -13.55481 -13.45228 -13.03535 -12.88545 -12.84237 -12.54802 -12.29376 -11.70877 -11.56048 -11.51167 -11.41207 -11.00155 -10.76243 -10.44648 -9.87940 -9.76403 -9.69719 -9.36358 -9.19199 -8.93947 -8.69544 -8.20539 -6.94717 -6.43750 -4.01417 0.47704 1.12908 1.54221 2.06024 2.21285 2.60138 2.78973 3.15558 3.16517 3.18999 3.28794 3.88200 3.98730 4.52790 4.57041 4.64258 4.81562 4.86353 5.02404 5.10547 5.14592 5.17546 5.26324 5.45292 5.58463 5.67306 5.74867 5.97695 6.12679 6.17285 6.33036 6.72166 6.84844 6.99974 7.08619 7.30334 7.44191 7.56811 7.64483 7.77561 8.01269 8.30449 9.01901 9.71071 10.74057 Molecular weight = 318.08amu Principal moments of inertia in cm(-1) A = 0.018568 B = 0.002606 C = 0.002360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1507.569324 B =10741.659361 C =11862.177402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.226 4.226 3 C 0.035 3.965 4 N -0.462 5.462 5 C 0.065 3.935 6 C -0.065 4.065 7 C 0.509 3.491 8 O -0.514 6.514 9 N -0.658 5.658 10 C 0.032 3.968 11 C -0.091 4.091 12 C -0.178 4.178 13 C 0.147 3.853 14 O -0.176 6.176 15 C -0.391 4.391 16 H 0.092 0.908 17 C 0.039 3.961 18 N -0.863 5.863 19 Si 0.941 3.059 20 H -0.270 1.270 21 H -0.278 1.278 22 H -0.270 1.270 23 C -0.221 4.221 24 C -0.063 4.063 25 S 0.135 5.865 26 H 0.076 0.924 27 H 0.080 0.920 28 H 0.071 0.929 29 H 0.174 0.826 30 H 0.115 0.885 31 H 0.125 0.875 32 H 0.403 0.597 33 H 0.115 0.885 34 H 0.122 0.878 35 H 0.270 0.730 36 H 0.130 0.870 37 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.953 0.548 -22.179 25.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.347 4.347 3 C -0.116 4.116 4 N -0.175 5.175 5 C -0.214 4.214 6 C -0.109 4.109 7 C 0.294 3.706 8 O -0.389 6.389 9 N -0.303 5.303 10 C -0.060 4.060 11 C -0.111 4.111 12 C -0.198 4.198 13 C 0.093 3.907 14 O -0.079 6.079 15 C -0.467 4.467 16 H 0.109 0.891 17 C -0.165 4.165 18 N -0.498 5.498 19 Si 0.765 3.235 20 H -0.195 1.195 21 H -0.203 1.203 22 H -0.195 1.195 23 C -0.241 4.241 24 C -0.083 4.083 25 S 0.389 5.611 26 H 0.094 0.906 27 H 0.098 0.902 28 H 0.090 0.910 29 H 0.191 0.809 30 H 0.133 0.867 31 H 0.143 0.857 32 H 0.237 0.763 33 H 0.133 0.867 34 H 0.140 0.860 35 H 0.080 0.920 36 H 0.148 0.852 37 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -12.872 0.128 -21.202 24.804 hybrid contribution -0.600 0.548 0.317 0.872 sum -13.471 0.676 -20.885 24.862 Atomic orbital electron populations 1.20226 0.86764 1.03578 1.02801 1.26006 1.01665 0.95110 1.11953 1.21641 0.86787 1.00067 1.03095 1.66154 1.17907 1.18566 1.14867 1.26006 0.99487 0.91637 1.04223 1.20225 0.90260 1.04001 0.96402 1.20225 0.82325 0.77555 0.90501 1.90752 1.54038 1.48536 1.45538 1.43101 1.14649 1.64794 1.07717 1.17227 0.93728 1.11764 0.83280 1.20356 0.93715 1.01077 0.95988 1.19995 0.99463 1.09938 0.90436 1.19417 0.91875 0.93231 0.86190 1.83971 1.39809 1.72614 1.11515 1.21290 0.92601 1.45003 0.87831 0.89080 1.25281 0.96988 0.96891 0.97318 1.70036 1.14953 1.44901 1.19892 0.85785 0.79249 0.79398 0.79051 1.19469 1.20274 1.19466 1.21103 0.96052 1.10138 0.96798 1.20838 0.99114 0.96776 0.91576 1.83870 0.98427 1.11093 1.67663 0.90587 0.90170 0.91035 0.80893 0.86705 0.85726 0.76257 0.86659 0.86020 0.91972 0.85231 0.85796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.48 10.42 36.01 0.38 -0.10 16 2 C -0.23 -2.23 6.60 -35.92 -0.24 -2.47 16 3 C 0.04 0.40 11.25 -19.19 -0.22 0.18 16 4 N -0.46 -6.21 10.54 -11.87 -0.13 -6.34 16 5 C 0.06 0.77 5.88 -13.46 -0.08 0.69 16 6 C -0.07 -0.62 6.28 -29.03 -0.18 -0.80 16 7 C 0.51 7.08 7.67 -10.98 -0.08 6.99 16 8 O -0.51 -9.58 13.47 5.56 0.07 -9.51 16 9 N -0.66 -8.58 5.34 -9.82 -0.05 -8.63 16 10 C 0.03 0.57 6.30 -83.63 -0.53 0.04 16 11 C -0.09 -1.58 9.96 -39.42 -0.39 -1.97 16 12 C -0.18 -3.73 9.98 -39.42 -0.39 -4.12 16 13 C 0.15 3.60 6.65 -39.09 -0.26 3.34 16 14 O -0.18 -5.06 9.75 0.02 0.00 -5.06 16 15 C -0.39 -11.08 9.48 30.88 0.29 -10.79 16 16 H 0.09 2.41 5.20 -52.48 -0.27 2.14 16 17 C 0.04 1.10 5.49 -17.52 -0.10 1.00 16 18 N -0.86 -25.45 13.67 55.48 0.76 -24.69 16 19 Si 0.94 20.83 29.55 -169.99 -5.02 15.80 16 20 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 21 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 22 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 23 C -0.22 -5.05 9.16 -39.42 -0.36 -5.41 16 24 C -0.06 -1.28 8.69 -39.41 -0.34 -1.63 16 25 S 0.13 1.39 23.18 -107.50 -2.49 -1.11 16 26 H 0.08 0.38 8.14 -51.93 -0.42 -0.05 16 27 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 28 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.17 1.51 8.06 -52.49 -0.42 1.09 16 30 H 0.11 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.12 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.40 3.48 8.82 -40.82 -0.36 3.12 16 33 H 0.12 1.56 8.06 -52.48 -0.42 1.14 16 34 H 0.12 2.41 8.06 -52.49 -0.42 1.99 16 35 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 36 H 0.13 2.99 5.63 -52.48 -0.30 2.69 16 37 H 0.12 2.50 6.23 -52.49 -0.33 2.17 16 LS Contribution 339.71 15.07 5.12 5.12 Total: -1.00 -35.77 339.71 -8.02 -43.79 By element: Atomic # 1 Polarization: 9.44 SS G_CDS: -3.77 Total: 5.67 kcal Atomic # 6 Polarization: -12.54 SS G_CDS: -2.50 Total: -15.05 kcal Atomic # 7 Polarization: -40.24 SS G_CDS: 0.58 Total: -39.66 kcal Atomic # 8 Polarization: -14.64 SS G_CDS: 0.08 Total: -14.57 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.80 kcal Atomic # 16 Polarization: 1.39 SS G_CDS: -2.49 Total: -1.11 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -35.77 -8.02 -43.79 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361694793.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.463 kcal (2) G-P(sol) polarization free energy of solvation -35.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.787 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds