Wall clock time and date at job start Tue Mar 31 2020 11:16:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.33636 * 126.04164 * 2 1 4 4 N 1.31781 * 114.50222 * 179.97438 * 3 2 1 5 5 C 1.29025 * 117.12558 * 0.02562 * 4 3 2 6 6 C 1.50696 * 124.91783 * 179.97438 * 5 4 3 7 7 C 1.50705 * 109.47228 * 90.01914 * 6 5 4 8 8 O 1.21282 * 119.99778 * 0.02562 * 7 6 5 9 9 N 1.34781 * 119.99900 * 180.02562 * 7 6 5 10 10 C 1.39985 * 119.99738 * 175.49467 * 9 7 6 11 11 C 1.38918 * 120.00398 * 214.84672 * 10 9 7 12 12 C 1.38001 * 120.00265 * 179.79185 * 11 10 9 13 13 C 1.38908 * 120.00013 * 0.46151 * 12 11 10 14 14 O 1.35778 * 119.99741 * 179.77030 * 13 12 11 15 15 C 1.34808 * 116.99786 * 185.36819 * 14 13 12 16 16 H 1.08006 * 120.00519 * 354.95831 * 15 14 13 17 17 C 1.38629 * 120.00224 * 174.96181 * 15 14 13 18 18 N 1.31574 * 119.99875 * 359.97438 * 17 15 14 19 19 Si 1.86806 * 120.00499 * 179.97438 * 17 15 14 20 20 H 1.48497 * 109.46880 * 59.99931 * 19 17 15 21 21 H 1.48498 * 109.47355 * 180.02562 * 19 17 15 22 22 H 1.48501 * 109.47047 * 300.00426 * 19 17 15 23 23 C 1.38905 * 119.99967 * 359.79305 * 13 12 11 24 24 C 1.38004 * 120.00534 * 359.97438 * 23 13 12 25 25 S 1.70978 * 110.16762 * 359.71998 * 5 4 3 26 26 H 1.08994 * 109.46606 * 89.99931 * 1 2 3 27 27 H 1.08996 * 109.46907 * 329.99676 * 1 2 3 28 28 H 1.09001 * 109.46999 * 209.99932 * 1 2 3 29 29 H 1.07998 * 122.74636 * 0.02562 * 3 2 1 30 30 H 1.08998 * 109.47812 * 210.02443 * 6 5 4 31 31 H 1.09004 * 109.47252 * 330.01868 * 6 5 4 32 32 H 0.96996 * 119.99674 * 355.49107 * 9 7 6 33 33 H 1.08011 * 119.99777 * 0.02562 * 11 10 9 34 34 H 1.08000 * 119.99843 * 180.23214 * 12 11 10 35 35 H 0.97001 * 120.00114 * 179.97438 * 18 17 15 36 36 H 1.08011 * 119.99526 * 179.97438 * 23 13 12 37 37 H 1.08002 * 119.99852 * 179.97438 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2933 1.0806 0.0000 4 7 3.5845 0.8170 0.0005 5 6 3.9312 -0.4258 0.0005 6 6 5.3532 -0.9247 0.0005 7 6 5.8270 -1.0915 1.4213 8 8 5.0830 -0.8314 2.3431 9 7 7.0776 -1.5298 1.6676 10 6 7.5498 -1.5951 2.9837 11 6 8.8856 -1.3281 3.2565 12 6 9.3501 -1.3883 4.5546 13 6 8.4843 -1.7252 5.5873 14 8 8.9425 -1.7890 6.8638 15 6 8.0804 -2.2288 7.8022 16 1 7.0533 -2.4337 7.5385 17 6 8.5121 -2.4181 9.1059 18 7 9.7635 -2.1690 9.4272 19 14 7.3174 -3.0269 10.4065 20 1 6.7865 -4.3553 10.0079 21 1 8.0211 -3.1450 11.7088 22 1 6.1944 -2.0639 10.5367 23 6 7.1499 -1.9974 5.3139 24 6 6.6841 -1.9325 4.0164 25 16 2.5436 -1.4249 0.0075 26 1 -0.3632 0.0000 -1.0276 27 1 -0.3633 0.8899 0.5139 28 1 -0.3633 -0.8900 0.5138 29 1 1.9026 2.0874 0.0004 30 1 5.4016 -1.8845 -0.5138 31 1 5.9907 -0.2050 -0.5130 32 1 7.6502 -1.8000 0.9328 33 1 9.5596 -1.0697 2.4531 34 1 10.3877 -1.1771 4.7671 35 1 10.0655 -2.3011 10.3395 36 1 6.4768 -2.2597 6.1168 37 1 5.6466 -2.1445 3.8039 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001361694793.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:16:12 Heat of formation + Delta-G solvation = -13.581464 kcal Electronic energy + Delta-G solvation = -22481.119549 eV Core-core repulsion = 18929.271663 eV Total energy + Delta-G solvation = -3551.847886 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.082 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.60151 -40.71856 -40.17684 -38.17411 -35.42337 -34.36516 -34.12571 -31.97521 -31.77940 -29.46575 -27.41643 -26.83502 -24.85955 -23.97544 -23.16327 -21.58356 -20.39716 -19.91019 -19.26654 -18.97576 -18.16035 -17.99193 -16.59968 -16.30377 -16.18186 -15.98999 -15.66136 -15.50082 -15.34754 -14.94951 -14.63518 -14.60655 -14.28186 -14.03651 -13.61931 -13.59652 -13.50307 -13.33576 -13.22098 -12.91235 -12.68884 -12.45263 -12.15761 -12.12328 -11.44143 -11.19036 -10.87853 -10.63901 -10.53053 -10.15650 -9.84502 -9.72673 -8.62628 -8.47798 -6.14767 -0.32022 0.37587 0.50485 0.55231 0.74946 1.33762 1.42691 1.49601 1.59535 1.74688 2.16945 2.22883 2.81150 3.10768 3.14789 3.51095 3.68566 3.99723 4.01992 4.11188 4.12981 4.25470 4.37571 4.47546 4.51503 4.66608 4.70870 4.75538 4.87979 5.02559 5.06620 5.12726 5.26264 5.34134 5.44499 5.58168 5.69510 6.01195 6.15857 6.51958 6.76052 6.96618 7.21502 7.76007 8.74684 Molecular weight = 318.08amu Principal moments of inertia in cm(-1) A = 0.018568 B = 0.002606 C = 0.002360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1507.569324 B =10741.659361 C =11862.177402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C -0.221 4.221 3 C 0.008 3.992 4 N -0.493 5.493 5 C 0.041 3.959 6 C -0.056 4.056 7 C 0.509 3.491 8 O -0.564 6.564 9 N -0.643 5.643 10 C 0.062 3.938 11 C -0.075 4.075 12 C -0.181 4.181 13 C 0.106 3.894 14 O -0.227 6.227 15 C -0.415 4.415 16 H 0.096 0.904 17 C -0.020 4.020 18 N -0.918 5.918 19 Si 1.015 2.985 20 H -0.257 1.257 21 H -0.268 1.268 22 H -0.261 1.261 23 C -0.231 4.231 24 C -0.076 4.076 25 S 0.144 5.856 26 H 0.095 0.905 27 H 0.091 0.909 28 H 0.076 0.924 29 H 0.189 0.811 30 H 0.159 0.841 31 H 0.150 0.850 32 H 0.430 0.570 33 H 0.170 0.830 34 H 0.129 0.871 35 H 0.274 0.726 36 H 0.115 0.885 37 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.220 0.222 -25.421 29.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.343 4.343 3 C -0.142 4.142 4 N -0.207 5.207 5 C -0.237 4.237 6 C -0.098 4.098 7 C 0.297 3.703 8 O -0.442 6.442 9 N -0.291 5.291 10 C -0.032 4.032 11 C -0.095 4.095 12 C -0.201 4.201 13 C 0.055 3.945 14 O -0.134 6.134 15 C -0.491 4.491 16 H 0.113 0.887 17 C -0.218 4.218 18 N -0.556 5.556 19 Si 0.835 3.165 20 H -0.182 1.182 21 H -0.192 1.192 22 H -0.186 1.186 23 C -0.251 4.251 24 C -0.096 4.096 25 S 0.399 5.601 26 H 0.113 0.887 27 H 0.109 0.891 28 H 0.095 0.905 29 H 0.205 0.795 30 H 0.176 0.824 31 H 0.168 0.832 32 H 0.270 0.730 33 H 0.187 0.813 34 H 0.147 0.853 35 H 0.083 0.917 36 H 0.132 0.868 37 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -14.139 -0.202 -24.555 28.335 hybrid contribution -0.333 0.719 0.912 1.208 sum -14.472 0.517 -23.644 27.726 Atomic orbital electron populations 1.20382 0.84479 1.04358 1.04260 1.26457 1.03221 0.94515 1.10092 1.21976 0.86633 1.01317 1.04259 1.66161 1.19130 1.19677 1.15741 1.26420 1.00893 0.91663 1.04706 1.20353 0.89257 1.06947 0.93280 1.21050 0.81546 0.75796 0.91956 1.90749 1.55384 1.50452 1.47604 1.43019 1.15118 1.64469 1.06486 1.17374 0.93407 1.07539 0.84863 1.20810 0.94245 0.98697 0.95738 1.20349 0.99554 1.09080 0.91125 1.19959 0.93262 0.95324 0.85933 1.83933 1.40822 1.75472 1.13127 1.21719 0.93103 1.45637 0.88670 0.88659 1.26524 0.99039 0.96838 0.99357 1.70169 1.17262 1.47502 1.20620 0.84698 0.76771 0.79212 0.75859 1.18168 1.19217 1.18585 1.21096 0.95503 1.10746 0.97770 1.20922 0.99751 0.97574 0.91360 1.83770 0.98111 1.11062 1.67193 0.88669 0.89063 0.90540 0.79453 0.82355 0.83205 0.72980 0.81277 0.85326 0.91747 0.86769 0.85732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.80 10.42 71.24 0.74 -0.06 16 2 C -0.22 -3.99 6.60 24.64 0.16 -3.83 16 3 C 0.01 0.18 11.25 83.66 0.94 1.12 16 4 N -0.49 -12.54 10.54 -191.46 -2.02 -14.56 16 5 C 0.04 0.88 5.88 88.52 0.52 1.40 16 6 C -0.06 -0.84 6.28 29.10 0.18 -0.65 16 7 C 0.51 12.55 7.67 87.66 0.67 13.22 16 8 O -0.56 -20.24 13.47 -3.03 -0.04 -20.28 16 9 N -0.64 -14.07 5.34 -303.38 -1.62 -15.69 16 10 C 0.06 2.01 6.30 38.17 0.24 2.25 16 11 C -0.08 -2.36 9.96 22.38 0.22 -2.13 16 12 C -0.18 -7.49 9.98 22.37 0.22 -7.27 16 13 C 0.11 5.40 6.65 22.59 0.15 5.55 16 14 O -0.23 -13.88 9.75 -22.83 -0.22 -14.11 16 15 C -0.42 -24.91 9.48 67.91 0.64 -24.27 16 16 H 0.10 5.37 5.20 -2.91 -0.02 5.35 16 17 C -0.02 -1.15 5.49 84.82 0.47 -0.68 16 18 N -0.92 -56.85 13.67 21.61 0.30 -56.55 16 19 Si 1.02 44.07 29.55 68.60 2.03 46.10 16 20 H -0.26 -10.51 7.11 99.48 0.71 -9.81 16 21 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 22 H -0.26 -10.84 7.11 99.48 0.71 -10.13 16 23 C -0.23 -10.97 9.16 22.37 0.20 -10.77 16 24 C -0.08 -3.06 8.69 22.38 0.19 -2.87 16 25 S 0.14 2.68 23.18 -56.49 -1.31 1.37 16 26 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 27 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 28 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 29 H 0.19 3.10 8.06 -2.91 -0.02 3.08 16 30 H 0.16 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.15 1.55 8.14 -2.39 -0.02 1.53 16 32 H 0.43 4.94 8.82 -92.71 -0.82 4.12 16 33 H 0.17 3.54 8.06 -2.90 -0.02 3.52 16 34 H 0.13 5.06 8.06 -2.91 -0.02 5.04 16 35 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16 36 H 0.11 5.62 5.63 -2.90 -0.02 5.61 16 37 H 0.12 5.02 6.23 -2.91 -0.02 5.00 16 Total: -1.00 -84.86 339.71 2.99 -81.86 By element: Atomic # 1 Polarization: 20.53 SS G_CDS: 0.32 Total: 20.84 kcal Atomic # 6 Polarization: -34.56 SS G_CDS: 5.57 Total: -28.99 kcal Atomic # 7 Polarization: -83.46 SS G_CDS: -3.34 Total: -86.80 kcal Atomic # 8 Polarization: -34.12 SS G_CDS: -0.26 Total: -34.39 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 2.03 Total: 46.10 kcal Atomic # 16 Polarization: 2.68 SS G_CDS: -1.31 Total: 1.37 kcal Total: -84.86 2.99 -81.86 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361694793.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.281 kcal (2) G-P(sol) polarization free energy of solvation -84.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.863 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds