Wall clock time and date at job start Tue Mar 31 2020 11:59:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.39000 * 119.99902 * 2 1 4 4 C 1.39143 * 119.70538 * 6.64278 * 3 2 1 5 5 C 1.38294 * 119.09566 * 179.76967 * 4 3 2 6 6 C 1.38881 * 118.50544 * 0.49686 * 5 4 3 7 7 C 1.38024 * 119.33047 * 359.50407 * 6 5 4 8 8 N 1.31962 * 120.85424 * 0.25492 * 7 6 5 9 9 S 1.65599 * 120.00120 * 180.02562 * 2 1 3 10 10 O 1.42099 * 106.40407 * 31.96442 * 9 2 1 11 11 O 1.42100 * 106.40324 * 164.89112 * 9 2 1 12 12 C 1.76206 * 107.21731 * 278.42776 * 9 2 1 13 13 C 1.37638 * 120.12750 * 112.84339 * 12 9 2 14 14 C 1.38615 * 120.24675 * 180.02562 * 13 12 9 15 15 C 1.38660 * 120.50056 * 359.97390 * 14 13 12 16 16 C 1.37595 * 120.24958 * 0.02562 * 15 14 13 17 17 C 1.40700 * 120.12500 * 292.56756 * 12 9 2 18 18 C 1.41397 * 120.24571 * 359.97438 * 17 12 9 19 19 H 1.07999 * 119.99779 * 321.84609 * 18 17 12 20 20 C 1.39946 * 119.99610 * 141.83699 * 18 17 12 21 21 N 1.30828 * 119.99441 * 166.79465 * 20 18 17 22 22 Si 1.86792 * 120.00614 * 346.79910 * 20 18 17 23 23 H 1.48505 * 109.47169 * 86.70215 * 22 20 18 24 24 H 1.48496 * 109.47368 * 206.70310 * 22 20 18 25 25 H 1.48498 * 109.46944 * 326.70573 * 22 20 18 26 26 H 1.08996 * 109.46987 * 90.00343 * 1 2 3 27 27 H 1.09003 * 109.47211 * 210.00088 * 1 2 3 28 28 H 1.08997 * 109.47526 * 330.00279 * 1 2 3 29 29 H 1.08000 * 120.44825 * 0.02562 * 4 3 2 30 30 H 1.07997 * 120.74627 * 180.25506 * 5 4 3 31 31 H 1.08007 * 120.33252 * 179.78210 * 6 5 4 32 32 H 1.08001 * 119.57313 * 180.23016 * 7 6 5 33 33 H 1.07995 * 119.87820 * 359.97438 * 13 12 9 34 34 H 1.07999 * 119.75012 * 179.97438 * 14 13 12 35 35 H 1.07995 * 119.87479 * 179.97438 * 15 14 13 36 36 H 1.08002 * 120.12751 * 179.97438 * 16 15 14 37 37 H 0.97000 * 120.00176 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1600 1.2038 0.0000 4 6 1.4651 2.4011 0.1398 5 6 2.1697 3.5911 0.1429 6 6 3.5498 3.5447 -0.0049 7 6 4.1746 2.3213 -0.1392 8 7 3.4772 1.2010 -0.1336 9 16 2.2931 -1.4341 -0.0006 10 8 1.4922 -2.3596 -0.7227 11 8 3.6334 -1.1234 -0.3558 12 6 2.3402 -2.0099 1.6640 13 6 1.6570 -3.1504 2.0202 14 6 1.6919 -3.6053 3.3291 15 6 2.4142 -2.9191 4.2935 16 6 3.1048 -1.7766 3.9601 17 6 3.0812 -1.3087 2.6330 18 6 3.7922 -0.1394 2.2774 19 1 4.2958 -0.0827 1.3236 20 6 3.8432 0.9445 3.1612 21 7 4.6986 1.9135 2.9591 22 14 2.6901 1.0076 4.6293 23 1 3.3005 0.2784 5.7700 24 1 2.4562 2.4225 5.0146 25 1 1.3968 0.3720 4.2707 26 1 -0.3633 -0.0001 -1.0276 27 1 -0.3634 -0.8900 0.5139 28 1 -0.3634 0.8900 0.5138 29 1 0.3906 2.4008 0.2486 30 1 1.6577 4.5356 0.2538 31 1 4.1288 4.4564 -0.0102 32 1 5.2481 2.2804 -0.2506 33 1 1.0908 -3.6925 1.2772 34 1 1.1525 -4.5009 3.5998 35 1 2.4342 -3.2823 5.3104 36 1 3.6664 -1.2435 4.7130 37 1 4.7338 2.6650 3.5714 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001414196370.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:59:35 Heat of formation + Delta-G solvation = 17.106582 kcal Electronic energy + Delta-G solvation = -25847.325668 eV Core-core repulsion = 22296.808516 eV Total energy + Delta-G solvation = -3550.517152 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.082 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -39.65072 -37.83485 -36.32618 -35.65734 -34.79280 -33.73829 -31.83009 -30.66059 -30.09964 -29.50918 -26.31311 -25.33063 -23.06066 -22.11055 -21.77628 -21.12682 -18.70743 -17.73652 -17.19569 -16.88751 -16.34574 -15.47406 -15.34960 -14.83755 -14.48870 -14.36764 -14.05208 -13.91672 -13.51292 -13.44534 -12.94886 -12.75720 -12.50163 -12.26869 -12.18478 -11.84640 -11.32892 -11.28514 -11.24756 -11.12375 -10.99021 -10.91107 -10.67924 -10.35406 -10.10758 -10.02615 -9.39107 -9.21457 -9.03679 -8.40979 -8.26254 -7.75719 -7.61746 -7.06346 -4.75660 1.30315 1.90660 2.02353 2.07695 2.51944 2.96532 3.02484 3.13429 3.53388 3.81414 4.28829 4.52375 4.76924 4.80207 5.10464 5.17352 5.43113 5.44292 5.60339 5.68881 5.73936 5.76133 5.82560 5.89621 5.93962 6.12128 6.20925 6.35090 6.45158 6.67180 6.73624 6.77039 6.94309 7.00740 7.09207 7.25455 7.46110 7.55046 7.59984 7.88649 8.35261 8.44597 8.74786 8.77166 9.89201 Molecular weight = 318.08amu Principal moments of inertia in cm(-1) A = 0.012653 B = 0.009507 C = 0.006651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2212.315621 B = 2944.362417 C = 4209.141287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.922 5.922 3 C 0.389 3.611 4 C -0.224 4.224 5 C -0.056 4.056 6 C -0.213 4.213 7 C 0.173 3.827 8 N -0.457 5.457 9 S 2.690 3.310 10 O -0.991 6.991 11 O -0.914 6.914 12 C -0.769 4.769 13 C 0.013 3.987 14 C -0.257 4.257 15 C -0.048 4.048 16 C -0.231 4.231 17 C 0.164 3.836 18 C -0.464 4.464 19 H 0.161 0.839 20 C 0.096 3.904 21 N -0.772 5.772 22 Si 0.891 3.109 23 H -0.265 1.265 24 H -0.286 1.286 25 H -0.249 1.249 26 H 0.065 0.935 27 H 0.079 0.921 28 H 0.078 0.922 29 H 0.127 0.873 30 H 0.123 0.877 31 H 0.123 0.877 32 H 0.152 0.848 33 H 0.113 0.887 34 H 0.101 0.899 35 H 0.098 0.902 36 H 0.109 0.891 37 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.251 4.263 -1.953 7.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.745 5.745 3 C 0.158 3.842 4 C -0.248 4.248 5 C -0.083 4.083 6 C -0.234 4.234 7 C 0.014 3.986 8 N -0.171 5.171 9 S 2.788 3.212 10 O -0.982 6.982 11 O -0.903 6.903 12 C -0.863 4.863 13 C -0.007 4.007 14 C -0.277 4.277 15 C -0.066 4.066 16 C -0.251 4.251 17 C 0.158 3.842 18 C -0.491 4.491 19 H 0.178 0.822 20 C -0.127 4.127 21 N -0.393 5.393 22 Si 0.717 3.283 23 H -0.190 1.190 24 H -0.213 1.213 25 H -0.172 1.172 26 H 0.084 0.916 27 H 0.098 0.902 28 H 0.097 0.903 29 H 0.145 0.855 30 H 0.141 0.859 31 H 0.141 0.859 32 H 0.169 0.831 33 H 0.131 0.869 34 H 0.119 0.881 35 H 0.116 0.884 36 H 0.126 0.874 37 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -5.390 3.258 -2.816 6.899 hybrid contribution -1.110 0.929 2.112 2.560 sum -6.500 4.187 -0.703 7.763 Atomic orbital electron populations 1.21644 0.77701 1.03988 1.02560 1.55552 1.15199 1.20278 1.83498 1.18009 0.88939 0.84867 0.92428 1.21410 1.00682 0.92231 1.10521 1.21141 0.94263 0.97191 0.95677 1.21807 0.95020 0.99422 1.07169 1.22312 0.99478 0.86269 0.90529 1.67734 1.04122 1.30773 1.14449 1.01888 0.73402 0.71176 0.74690 1.93464 1.71724 1.61236 1.71795 1.93612 1.32587 1.81594 1.82553 1.29944 1.19712 1.12813 1.23857 1.20418 0.92215 0.92384 0.95673 1.20513 1.09740 1.03625 0.93851 1.20876 0.93957 0.94426 0.97388 1.21430 1.06500 0.99394 0.97761 1.17188 0.85978 0.90989 0.90005 1.20955 1.24791 0.95870 1.07469 0.82187 1.26065 0.94125 0.95192 0.97315 1.69628 1.27272 1.07652 1.34796 0.86634 0.82930 0.77035 0.81675 1.19024 1.21294 1.17233 0.91616 0.90198 0.90307 0.85543 0.85924 0.85939 0.83102 0.86915 0.88114 0.88351 0.87364 0.90265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.28 9.89 59.85 0.59 1.87 16 2 N -0.92 -18.06 3.37 -67.20 -0.23 -18.28 16 3 C 0.39 7.80 6.45 -155.02 -1.00 6.80 16 4 C -0.22 -3.74 9.28 -39.23 -0.36 -4.11 16 5 C -0.06 -0.86 10.17 -39.32 -0.40 -1.26 16 6 C -0.21 -3.42 10.10 -39.42 -0.40 -3.82 16 7 C 0.17 3.30 10.76 -17.57 -0.19 3.11 16 8 N -0.46 -9.96 4.79 -12.44 -0.06 -10.02 16 9 S 2.69 60.37 5.02 -107.50 -0.54 59.83 16 10 O -0.99 -22.34 16.35 -57.17 -0.93 -23.28 16 11 O -0.91 -22.92 13.11 -57.17 -0.75 -23.67 16 12 C -0.77 -18.05 5.97 -38.87 -0.23 -18.28 16 13 C 0.01 0.28 9.54 -39.66 -0.38 -0.10 16 14 C -0.26 -5.27 10.05 -39.29 -0.39 -5.66 16 15 C -0.05 -1.00 10.02 -39.66 -0.40 -1.40 16 16 C -0.23 -5.43 7.28 -38.87 -0.28 -5.71 16 17 C 0.16 4.07 4.93 -106.82 -0.53 3.54 16 18 C -0.46 -11.82 6.76 -37.74 -0.26 -12.07 16 19 H 0.16 4.38 4.12 -52.49 -0.22 4.16 16 20 C 0.10 2.31 5.44 -17.34 -0.09 2.21 16 21 N -0.77 -18.13 13.51 55.55 0.75 -17.38 16 22 Si 0.89 19.52 24.76 -169.99 -4.21 15.31 16 23 H -0.26 -5.68 6.47 56.52 0.37 -5.31 16 24 H -0.29 -6.02 7.11 56.52 0.40 -5.62 16 25 H -0.25 -5.64 7.11 56.52 0.40 -5.24 16 26 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 27 H 0.08 1.13 8.00 -51.93 -0.42 0.72 16 28 H 0.08 0.98 5.93 -51.93 -0.31 0.67 16 29 H 0.13 1.73 6.00 -52.49 -0.32 1.42 16 30 H 0.12 1.45 8.06 -52.49 -0.42 1.03 16 31 H 0.12 1.63 8.06 -52.48 -0.42 1.20 16 32 H 0.15 2.70 8.06 -52.49 -0.42 2.28 16 33 H 0.11 2.21 7.32 -52.49 -0.38 1.83 16 34 H 0.10 1.76 8.06 -52.49 -0.42 1.33 16 35 H 0.10 1.75 8.06 -52.49 -0.42 1.33 16 36 H 0.11 2.50 5.24 -52.49 -0.28 2.22 16 37 H 0.29 6.20 8.30 -40.82 -0.34 5.86 16 LS Contribution 311.58 15.07 4.70 4.70 Total: -1.00 -30.16 311.58 -9.21 -39.37 By element: Atomic # 1 Polarization: 11.92 SS G_CDS: -3.62 Total: 8.29 kcal Atomic # 6 Polarization: -30.55 SS G_CDS: -4.32 Total: -34.88 kcal Atomic # 7 Polarization: -46.15 SS G_CDS: 0.46 Total: -45.68 kcal Atomic # 8 Polarization: -45.26 SS G_CDS: -1.68 Total: -46.94 kcal Atomic # 14 Polarization: 19.52 SS G_CDS: -4.21 Total: 15.31 kcal Atomic # 16 Polarization: 60.37 SS G_CDS: -0.54 Total: 59.83 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -30.16 -9.21 -39.37 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001414196370.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.479 kcal (2) G-P(sol) polarization free energy of solvation -30.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.373 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds