Wall clock time and date at job start Tue Mar 31 2020 11:59:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.39000 * 119.99902 * 2 1 4 4 C 1.39143 * 119.70538 * 6.64278 * 3 2 1 5 5 C 1.38294 * 119.09566 * 179.76967 * 4 3 2 6 6 C 1.38881 * 118.50544 * 0.49686 * 5 4 3 7 7 C 1.38024 * 119.33047 * 359.50407 * 6 5 4 8 8 N 1.31962 * 120.85424 * 0.25492 * 7 6 5 9 9 S 1.65599 * 120.00120 * 180.02562 * 2 1 3 10 10 O 1.42099 * 106.40407 * 31.96442 * 9 2 1 11 11 O 1.42100 * 106.40324 * 164.89112 * 9 2 1 12 12 C 1.76206 * 107.21731 * 278.42776 * 9 2 1 13 13 C 1.37638 * 120.12750 * 112.84339 * 12 9 2 14 14 C 1.38615 * 120.24675 * 180.02562 * 13 12 9 15 15 C 1.38660 * 120.50056 * 359.97390 * 14 13 12 16 16 C 1.37595 * 120.24958 * 0.02562 * 15 14 13 17 17 C 1.40700 * 120.12500 * 292.56756 * 12 9 2 18 18 C 1.41397 * 120.24571 * 359.97438 * 17 12 9 19 19 H 1.07999 * 119.99779 * 321.84609 * 18 17 12 20 20 C 1.39946 * 119.99610 * 141.83699 * 18 17 12 21 21 N 1.30828 * 119.99441 * 166.79465 * 20 18 17 22 22 Si 1.86792 * 120.00614 * 346.79910 * 20 18 17 23 23 H 1.48505 * 109.47169 * 86.70215 * 22 20 18 24 24 H 1.48496 * 109.47368 * 206.70310 * 22 20 18 25 25 H 1.48498 * 109.46944 * 326.70573 * 22 20 18 26 26 H 1.08996 * 109.46987 * 90.00343 * 1 2 3 27 27 H 1.09003 * 109.47211 * 210.00088 * 1 2 3 28 28 H 1.08997 * 109.47526 * 330.00279 * 1 2 3 29 29 H 1.08000 * 120.44825 * 0.02562 * 4 3 2 30 30 H 1.07997 * 120.74627 * 180.25506 * 5 4 3 31 31 H 1.08007 * 120.33252 * 179.78210 * 6 5 4 32 32 H 1.08001 * 119.57313 * 180.23016 * 7 6 5 33 33 H 1.07995 * 119.87820 * 359.97438 * 13 12 9 34 34 H 1.07999 * 119.75012 * 179.97438 * 14 13 12 35 35 H 1.07995 * 119.87479 * 179.97438 * 15 14 13 36 36 H 1.08002 * 120.12751 * 179.97438 * 16 15 14 37 37 H 0.97000 * 120.00176 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1600 1.2038 0.0000 4 6 1.4651 2.4011 0.1398 5 6 2.1697 3.5911 0.1429 6 6 3.5498 3.5447 -0.0049 7 6 4.1746 2.3213 -0.1392 8 7 3.4772 1.2010 -0.1336 9 16 2.2931 -1.4341 -0.0006 10 8 1.4922 -2.3596 -0.7227 11 8 3.6334 -1.1234 -0.3558 12 6 2.3402 -2.0099 1.6640 13 6 1.6570 -3.1504 2.0202 14 6 1.6919 -3.6053 3.3291 15 6 2.4142 -2.9191 4.2935 16 6 3.1048 -1.7766 3.9601 17 6 3.0812 -1.3087 2.6330 18 6 3.7922 -0.1394 2.2774 19 1 4.2958 -0.0827 1.3236 20 6 3.8432 0.9445 3.1612 21 7 4.6986 1.9135 2.9591 22 14 2.6901 1.0076 4.6293 23 1 3.3005 0.2784 5.7700 24 1 2.4562 2.4225 5.0146 25 1 1.3968 0.3720 4.2707 26 1 -0.3633 -0.0001 -1.0276 27 1 -0.3634 -0.8900 0.5139 28 1 -0.3634 0.8900 0.5138 29 1 0.3906 2.4008 0.2486 30 1 1.6577 4.5356 0.2538 31 1 4.1288 4.4564 -0.0102 32 1 5.2481 2.2804 -0.2506 33 1 1.0908 -3.6925 1.2772 34 1 1.1525 -4.5009 3.5998 35 1 2.4342 -3.2823 5.3104 36 1 3.6664 -1.2435 4.7130 37 1 4.7338 2.6650 3.5714 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001414196370.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:59:34 Heat of formation + Delta-G solvation = -1.361690 kcal Electronic energy + Delta-G solvation = -25848.126513 eV Core-core repulsion = 22296.808516 eV Total energy + Delta-G solvation = -3551.317996 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.082 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.00662 -39.54749 -38.07497 -37.02849 -36.58696 -35.49102 -33.15677 -32.39431 -31.80200 -30.82871 -27.56942 -27.08564 -24.41971 -23.71231 -23.22847 -22.85215 -20.23651 -19.50542 -18.79428 -18.33380 -17.98937 -17.14911 -16.65423 -16.37444 -16.03891 -15.90818 -15.57345 -15.43170 -15.14695 -15.05404 -14.64049 -14.10002 -13.96521 -13.78544 -13.58590 -13.47016 -13.00754 -12.91495 -12.84629 -12.70566 -12.65380 -12.44942 -12.37263 -12.01856 -11.73441 -11.48393 -11.13469 -10.91607 -10.41623 -9.99551 -9.80038 -9.47826 -8.99059 -8.81551 -6.56340 -0.34681 0.33958 0.56286 0.75004 0.78701 1.23311 1.30532 1.39916 2.01960 2.09098 2.56014 2.94257 3.22751 3.33563 3.47725 3.67691 4.16422 4.20106 4.22877 4.31240 4.37761 4.46298 4.53843 4.59230 4.62359 4.71784 4.77724 4.90904 4.97549 5.09644 5.28802 5.38758 5.44193 5.49220 5.54811 5.63858 5.76547 5.86605 6.17440 6.21794 6.56390 6.65491 6.89269 7.41710 8.17609 Molecular weight = 318.08amu Principal moments of inertia in cm(-1) A = 0.012653 B = 0.009507 C = 0.006651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2212.315621 B = 2944.362417 C = 4209.141287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.925 5.925 3 C 0.358 3.642 4 C -0.220 4.220 5 C -0.053 4.053 6 C -0.204 4.204 7 C 0.143 3.857 8 N -0.497 5.497 9 S 2.702 3.298 10 O -1.001 7.001 11 O -0.952 6.952 12 C -0.784 4.784 13 C -0.001 4.001 14 C -0.249 4.249 15 C -0.045 4.045 16 C -0.258 4.258 17 C 0.146 3.854 18 C -0.487 4.487 19 H 0.135 0.865 20 C 0.075 3.925 21 N -0.789 5.789 22 Si 0.930 3.070 23 H -0.261 1.261 24 H -0.272 1.272 25 H -0.261 1.261 26 H 0.087 0.913 27 H 0.082 0.918 28 H 0.105 0.895 29 H 0.159 0.841 30 H 0.167 0.833 31 H 0.151 0.849 32 H 0.143 0.857 33 H 0.130 0.870 34 H 0.139 0.861 35 H 0.135 0.865 36 H 0.106 0.894 37 H 0.294 0.706 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.670 4.962 -0.706 10.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.751 5.751 3 C 0.127 3.873 4 C -0.244 4.244 5 C -0.079 4.079 6 C -0.225 4.225 7 C -0.014 4.014 8 N -0.211 5.211 9 S 2.800 3.200 10 O -0.992 6.992 11 O -0.942 6.942 12 C -0.878 4.878 13 C -0.020 4.020 14 C -0.269 4.269 15 C -0.063 4.063 16 C -0.277 4.277 17 C 0.141 3.859 18 C -0.514 4.514 19 H 0.152 0.848 20 C -0.146 4.146 21 N -0.412 5.412 22 Si 0.754 3.246 23 H -0.186 1.186 24 H -0.198 1.198 25 H -0.185 1.185 26 H 0.105 0.895 27 H 0.101 0.899 28 H 0.123 0.877 29 H 0.177 0.823 30 H 0.185 0.815 31 H 0.169 0.831 32 H 0.160 0.840 33 H 0.148 0.852 34 H 0.157 0.843 35 H 0.153 0.847 36 H 0.124 0.876 37 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -7.799 3.956 -1.568 8.884 hybrid contribution -0.401 0.647 1.675 1.840 sum -8.200 4.602 0.108 9.404 Atomic orbital electron populations 1.22045 0.75185 1.05476 1.04504 1.55284 1.16788 1.19238 1.83755 1.18324 0.88885 0.85830 0.94236 1.21812 1.02331 0.91358 1.08938 1.21663 0.93855 0.98484 0.93909 1.22107 0.96019 0.99148 1.05256 1.22397 0.99460 0.87238 0.92339 1.67540 1.05643 1.32373 1.15594 1.01312 0.72745 0.71564 0.74336 1.93433 1.71654 1.62139 1.71940 1.93565 1.35095 1.82405 1.83098 1.30193 1.19934 1.13673 1.24000 1.20775 0.92239 0.92007 0.97001 1.21000 1.08607 1.04222 0.93045 1.21314 0.92468 0.93150 0.99388 1.21543 1.08012 1.00877 0.97296 1.17395 0.86282 0.91160 0.91088 1.20793 1.26379 0.97142 1.07136 0.84793 1.26402 0.94902 0.94767 0.98520 1.69644 1.27925 1.08052 1.35545 0.86050 0.81067 0.77526 0.79940 1.18634 1.19814 1.18546 0.89496 0.89905 0.87687 0.82344 0.81535 0.83092 0.84000 0.85196 0.84315 0.84701 0.87633 0.89550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.99 9.89 127.77 1.26 3.25 16 2 N -0.92 -36.08 3.37 -366.53 -1.24 -37.32 16 3 C 0.36 14.34 6.45 133.07 0.86 15.20 16 4 C -0.22 -6.87 9.28 22.50 0.21 -6.66 16 5 C -0.05 -1.46 10.17 22.44 0.23 -1.23 16 6 C -0.20 -6.31 10.10 22.37 0.23 -6.08 16 7 C 0.14 5.66 10.76 84.62 0.91 6.57 16 8 N -0.50 -22.42 4.79 -193.27 -0.93 -23.35 16 9 S 2.70 123.95 5.02 -56.49 -0.28 123.67 16 10 O -1.00 -45.39 16.35 -128.00 -2.09 -47.48 16 11 O -0.95 -50.38 13.11 -128.00 -1.68 -52.06 16 12 C -0.78 -36.98 5.97 22.73 0.14 -36.84 16 13 C 0.00 -0.02 9.54 22.22 0.21 0.19 16 14 C -0.25 -9.44 10.05 22.46 0.23 -9.22 16 15 C -0.04 -1.77 10.02 22.22 0.22 -1.55 16 16 C -0.26 -11.92 7.28 22.73 0.17 -11.76 16 17 C 0.15 7.32 4.93 -21.29 -0.10 7.22 16 18 C -0.49 -25.57 6.76 23.46 0.16 -25.41 16 19 H 0.13 7.76 4.12 -2.91 -0.01 7.74 16 20 C 0.08 3.65 5.44 85.26 0.46 4.12 16 21 N -0.79 -37.61 13.51 21.83 0.29 -37.32 16 22 Si 0.93 39.45 24.76 68.60 1.70 41.15 16 23 H -0.26 -10.76 6.47 99.48 0.64 -10.12 16 24 H -0.27 -10.73 7.11 99.48 0.71 -10.02 16 25 H -0.26 -11.50 7.11 99.48 0.71 -10.79 16 26 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 27 H 0.08 2.23 8.00 -2.39 -0.02 2.21 16 28 H 0.10 2.31 5.93 -2.39 -0.01 2.30 16 29 H 0.16 3.75 6.00 -2.91 -0.02 3.73 16 30 H 0.17 3.10 8.06 -2.91 -0.02 3.08 16 31 H 0.15 3.67 8.06 -2.91 -0.02 3.65 16 32 H 0.14 5.50 8.06 -2.91 -0.02 5.48 16 33 H 0.13 4.88 7.32 -2.91 -0.02 4.86 16 34 H 0.14 4.18 8.06 -2.91 -0.02 4.16 16 35 H 0.14 4.27 8.06 -2.91 -0.02 4.25 16 36 H 0.11 4.83 5.24 -2.91 -0.02 4.82 16 37 H 0.29 12.69 8.30 -92.71 -0.77 11.92 16 Total: -1.00 -67.67 311.58 2.00 -65.67 By element: Atomic # 1 Polarization: 28.19 SS G_CDS: 1.05 Total: 29.24 kcal Atomic # 6 Polarization: -67.38 SS G_CDS: 5.17 Total: -62.20 kcal Atomic # 7 Polarization: -96.12 SS G_CDS: -1.87 Total: -97.99 kcal Atomic # 8 Polarization: -95.77 SS G_CDS: -3.77 Total: -99.54 kcal Atomic # 14 Polarization: 39.45 SS G_CDS: 1.70 Total: 41.15 kcal Atomic # 16 Polarization: 123.95 SS G_CDS: -0.28 Total: 123.67 kcal Total: -67.67 2.00 -65.67 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001414196370.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.307 kcal (2) G-P(sol) polarization free energy of solvation -67.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.669 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds