Wall clock time and date at job start Tue Mar 31 2020 11:35:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 N 1.46504 * 109.47007 * 78.24314 * 3 2 1 5 5 C 1.36938 * 119.99819 * 263.89086 * 4 3 2 6 6 H 1.08005 * 120.00048 * 202.00620 * 5 4 3 7 7 C 1.38815 * 119.99880 * 22.00533 * 5 4 3 8 8 N 1.31618 * 120.00089 * 14.24043 * 7 5 4 9 9 Si 1.86808 * 119.99680 * 194.24214 * 7 5 4 10 10 H 1.48495 * 109.46985 * 60.00234 * 9 7 5 11 11 H 1.48502 * 109.46819 * 179.97438 * 9 7 5 12 12 H 1.48498 * 109.47191 * 299.99852 * 9 7 5 13 13 C 1.46497 * 120.00385 * 83.89170 * 4 3 2 14 14 C 1.50702 * 109.47205 * 275.47595 * 13 4 3 15 15 C 1.38398 * 120.36538 * 100.93188 * 14 13 4 16 16 C 1.39734 * 118.33044 * 180.02562 * 15 14 13 17 17 C 1.48457 * 120.51768 * 179.97438 * 16 15 14 18 18 N 1.34044 * 126.67219 * 359.68827 * 17 16 15 19 19 N 1.28993 * 107.26457 * 180.26164 * 18 17 16 20 20 N 1.28726 * 108.94127 * 359.97438 * 19 18 17 21 21 H 0.97010 * 125.33416 * 179.97438 * 20 19 18 22 22 N 1.28862 * 109.32089 * 0.02562 * 20 19 18 23 23 C 1.39267 * 118.95880 * 0.25725 * 16 15 14 24 24 N 1.31745 * 120.62320 * 359.44736 * 23 16 15 25 25 C 1.32012 * 121.82359 * 0.59226 * 24 23 16 26 26 Cl 1.73605 * 119.50443 * 179.70264 * 25 24 23 27 27 H 4.40643 * 5.51325 * 180.02562 * 4 1 2 28 28 H 1.08998 * 109.47179 * 318.24477 * 3 2 1 29 29 H 1.08997 * 109.47490 * 198.24046 * 3 2 1 30 30 H 0.97004 * 119.99688 * 180.02562 * 8 7 5 31 31 H 1.09000 * 109.47445 * 155.47273 * 13 4 3 32 32 H 1.09000 * 109.47008 * 35.47485 * 13 4 3 33 33 H 1.07990 * 120.83695 * 0.04375 * 15 14 13 34 34 H 1.08007 * 119.68925 * 179.72759 * 23 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1344 -0.2806 -1.3523 5 6 3.4822 -1.5578 -1.7028 6 1 4.1546 -1.7265 -2.5310 7 6 2.9706 -2.6359 -0.9936 8 7 1.9503 -2.4639 -0.1801 9 14 3.7302 -4.3307 -1.1937 10 1 5.1592 -4.2831 -0.7927 11 1 3.0073 -5.3018 -0.3337 12 1 3.6283 -4.7544 -2.6134 13 6 3.2509 0.8046 -2.3296 14 6 1.9190 1.0213 -3.0006 15 6 1.0997 2.0655 -2.6085 16 6 -0.1263 2.2267 -3.2592 17 6 -1.0432 3.3300 -2.8771 18 7 -0.8367 4.2484 -1.9228 19 7 -1.8700 5.0203 -1.9042 20 7 -2.7041 4.6235 -2.8007 21 1 -3.5621 5.0347 -2.9900 22 7 -2.2211 3.5938 -3.4065 23 6 -0.4772 1.3327 -4.2677 24 7 0.3373 0.3561 -4.6120 25 6 1.5014 0.1777 -4.0157 26 17 2.5244 -1.1340 -4.5125 27 1 -1.0500 0.0002 0.0000 28 1 3.0097 -0.7658 0.6844 29 1 3.0089 0.9768 0.3216 30 1 1.5930 -3.2172 0.3158 31 1 3.9967 0.5401 -3.0792 32 1 3.5550 1.7198 -1.8217 33 1 1.4004 2.7388 -1.8196 34 1 -1.4240 1.4437 -4.7755 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001588350415.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:35:07 Heat of formation + Delta-G solvation = 244.952270 kcal Electronic energy + Delta-G solvation = -23863.626491 eV Core-core repulsion = 20249.698170 eV Total energy + Delta-G solvation = -3613.928320 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 318.069 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -44.47120 -39.88595 -36.34666 -35.86551 -34.50573 -33.68896 -32.82528 -31.52905 -31.04177 -30.02331 -26.51378 -25.84969 -24.69017 -24.63393 -22.80067 -22.10190 -20.59711 -19.19393 -17.51508 -17.16299 -16.93859 -16.51039 -16.25188 -15.73506 -15.00246 -14.21826 -14.07802 -13.64895 -13.50646 -13.37754 -12.93502 -12.69796 -12.39119 -11.95246 -11.73466 -11.46141 -11.42773 -11.31498 -11.16570 -11.04252 -10.79222 -10.62929 -10.52527 -10.11850 -9.93887 -9.43455 -9.34649 -8.91793 -8.75664 -8.38013 -8.20622 -7.04775 -5.81542 -3.26236 0.69677 1.16713 1.56786 2.17750 2.38647 2.52357 3.36436 3.41979 3.42947 3.69322 4.00887 4.18379 4.24205 4.41572 4.53085 4.83957 5.11563 5.23115 5.30410 5.37664 5.40797 5.56194 5.64673 5.84429 5.90420 6.08373 6.26050 6.34404 6.45096 6.61017 6.68704 6.78729 7.21210 7.43586 7.72978 8.06282 8.12454 8.23826 9.05625 9.22820 9.67657 10.13686 11.20134 Molecular weight = 318.07amu Principal moments of inertia in cm(-1) A = 0.018744 B = 0.004725 C = 0.004198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1493.428056 B = 5924.029514 C = 6667.784928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.300 4.300 2 C -0.089 4.089 3 C 0.268 3.732 4 N -0.568 5.568 5 C -0.251 4.251 6 H 0.079 0.921 7 C 0.009 3.991 8 N -0.886 5.886 9 Si 0.899 3.101 10 H -0.282 1.282 11 H -0.291 1.291 12 H -0.282 1.282 13 C 0.176 3.824 14 C -0.120 4.120 15 C -0.016 4.016 16 C -0.081 4.081 17 C 0.239 3.761 18 N -0.264 5.264 19 N -0.053 5.053 20 N -0.231 5.231 21 H 0.474 0.526 22 N -0.298 5.298 23 C 0.137 3.863 24 N -0.484 5.484 25 C 0.210 3.790 26 Cl -0.009 7.009 27 H 0.182 0.818 28 H 0.100 0.900 29 H 0.038 0.962 30 H 0.256 0.744 31 H 0.074 0.926 32 H 0.058 0.942 33 H 0.145 0.855 34 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.975 12.396 -5.414 14.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.319 4.319 2 C -0.092 4.092 3 C 0.143 3.857 4 N -0.284 5.284 5 C -0.380 4.380 6 H 0.097 0.903 7 C -0.191 4.191 8 N -0.528 5.528 9 Si 0.729 3.271 10 H -0.208 1.208 11 H -0.217 1.217 12 H -0.208 1.208 13 C 0.048 3.952 14 C -0.128 4.128 15 C -0.045 4.045 16 C -0.087 4.087 17 C -0.042 4.042 18 N -0.137 5.137 19 N -0.048 5.048 20 N -0.077 5.077 21 H 0.327 0.673 22 N -0.150 5.150 23 C -0.024 4.024 24 N -0.194 5.194 25 C 0.045 3.955 26 Cl 0.020 6.980 27 H 0.199 0.801 28 H 0.118 0.882 29 H 0.056 0.944 30 H 0.067 0.933 31 H 0.092 0.908 32 H 0.076 0.924 33 H 0.163 0.837 34 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -5.287 12.039 -5.615 14.298 hybrid contribution -0.734 -0.908 0.130 1.175 sum -6.021 11.131 -5.485 13.793 Atomic orbital electron populations 1.24000 0.95153 1.08542 1.04240 1.24070 0.95051 0.93460 0.96583 1.17881 0.82872 0.97656 0.87278 1.44453 1.73106 1.04954 1.05927 1.19248 1.21205 0.81546 1.15990 0.90301 1.25036 0.96162 0.97860 1.00058 1.70010 1.22526 1.30322 1.29981 0.86409 0.78766 0.84174 0.77754 1.20815 1.21669 1.20805 1.20184 0.89916 0.92726 0.92343 1.21818 1.03441 0.93221 0.94298 1.21351 0.90888 0.95760 0.96456 1.18178 0.94128 0.94887 1.01506 1.23456 0.90934 0.97028 0.92747 1.76121 1.15880 1.03727 1.17960 1.78899 0.96335 1.20026 1.09542 1.47688 1.19053 1.18794 1.22132 0.67258 1.74913 1.12124 1.05314 1.22620 1.22421 0.97946 0.88619 0.93423 1.67071 1.03434 1.20026 1.28900 1.21690 0.90476 0.90867 0.92495 1.98417 1.63487 1.45404 1.90689 0.80058 0.88191 0.94444 0.93326 0.90817 0.92417 0.83740 0.82126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.30 -6.87 19.25 29.55 0.57 -6.31 16 2 C -0.09 -2.07 10.49 -37.12 -0.39 -2.46 16 3 C 0.27 5.92 5.45 -6.83 -0.04 5.88 16 4 N -0.57 -12.58 2.52 -177.95 -0.45 -13.03 16 5 C -0.25 -6.10 7.75 -15.06 -0.12 -6.22 16 6 H 0.08 1.89 7.04 -52.48 -0.37 1.52 16 7 C 0.01 0.22 5.01 -17.43 -0.09 0.14 16 8 N -0.89 -24.06 9.22 55.49 0.51 -23.55 16 9 Si 0.90 20.93 29.58 -169.99 -5.03 15.90 16 10 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 11 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 12 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 13 C 0.18 3.25 5.41 -5.19 -0.03 3.22 16 14 C -0.12 -2.25 4.88 -104.49 -0.51 -2.76 16 15 C -0.02 -0.27 9.11 -38.96 -0.36 -0.62 16 16 C -0.08 -1.31 5.89 -104.74 -0.62 -1.93 16 17 C 0.24 3.54 7.95 -156.31 -1.24 2.30 16 18 N -0.26 -3.96 12.31 32.15 0.40 -3.56 16 19 N -0.05 -0.65 13.47 60.35 0.81 0.16 16 20 N -0.23 -2.18 7.90 60.35 0.48 -1.70 16 21 H 0.47 1.96 8.96 -340.36 -3.05 -1.09 16 22 N -0.30 -3.69 12.11 32.17 0.39 -3.30 16 23 C 0.14 2.26 10.87 -17.21 -0.19 2.07 16 24 N -0.48 -9.19 10.33 -10.09 -0.10 -9.29 16 25 C 0.21 4.15 7.27 -17.40 -0.13 4.02 16 26 Cl -0.01 -0.18 24.98 -51.86 -1.30 -1.47 16 27 H 0.18 3.75 7.80 -54.09 -0.42 3.33 16 28 H 0.10 2.43 6.53 -51.93 -0.34 2.09 16 29 H 0.04 0.72 8.02 -51.93 -0.42 0.30 16 30 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 31 H 0.07 1.31 7.22 -51.93 -0.38 0.94 16 32 H 0.06 0.92 7.90 -51.93 -0.41 0.51 16 33 H 0.14 2.31 7.96 -52.49 -0.42 1.89 16 34 H 0.16 2.22 7.89 -52.48 -0.41 1.81 16 LS Contribution 320.71 15.07 4.83 4.83 Total: -1.00 -30.59 320.71 -7.94 -38.52 By element: Atomic # 1 Polarization: 4.51 SS G_CDS: -5.35 Total: -0.84 kcal Atomic # 6 Polarization: 0.46 SS G_CDS: -3.13 Total: -2.67 kcal Atomic # 7 Polarization: -56.31 SS G_CDS: 2.03 Total: -54.27 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.03 Total: 15.90 kcal Atomic # 17 Polarization: -0.18 SS G_CDS: -1.30 Total: -1.47 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -30.59 -7.94 -38.52 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001588350415.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 283.474 kcal (2) G-P(sol) polarization free energy of solvation -30.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 252.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.522 kcal (6) G-S(sol) free energy of system = (1) + (5) 244.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds