Wall clock time and date at job start Tue Mar 31 2020 11:35:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 N 1.46504 * 109.47007 * 78.24314 * 3 2 1 5 5 C 1.36938 * 119.99819 * 263.89086 * 4 3 2 6 6 H 1.08005 * 120.00048 * 202.00620 * 5 4 3 7 7 C 1.38815 * 119.99880 * 22.00533 * 5 4 3 8 8 N 1.31618 * 120.00089 * 14.24043 * 7 5 4 9 9 Si 1.86808 * 119.99680 * 194.24214 * 7 5 4 10 10 H 1.48495 * 109.46985 * 60.00234 * 9 7 5 11 11 H 1.48502 * 109.46819 * 179.97438 * 9 7 5 12 12 H 1.48498 * 109.47191 * 299.99852 * 9 7 5 13 13 C 1.46497 * 120.00385 * 83.89170 * 4 3 2 14 14 C 1.50702 * 109.47205 * 275.47595 * 13 4 3 15 15 C 1.38398 * 120.36538 * 100.93188 * 14 13 4 16 16 C 1.39734 * 118.33044 * 180.02562 * 15 14 13 17 17 C 1.48457 * 120.51768 * 179.97438 * 16 15 14 18 18 N 1.34044 * 126.67219 * 359.68827 * 17 16 15 19 19 N 1.28993 * 107.26457 * 180.26164 * 18 17 16 20 20 N 1.28726 * 108.94127 * 359.97438 * 19 18 17 21 21 H 0.97010 * 125.33416 * 179.97438 * 20 19 18 22 22 N 1.28862 * 109.32089 * 0.02562 * 20 19 18 23 23 C 1.39267 * 118.95880 * 0.25725 * 16 15 14 24 24 N 1.31745 * 120.62320 * 359.44736 * 23 16 15 25 25 C 1.32012 * 121.82359 * 0.59226 * 24 23 16 26 26 Cl 1.73605 * 119.50443 * 179.70264 * 25 24 23 27 27 H 4.40643 * 5.51325 * 180.02562 * 4 1 2 28 28 H 1.08998 * 109.47179 * 318.24477 * 3 2 1 29 29 H 1.08997 * 109.47490 * 198.24046 * 3 2 1 30 30 H 0.97004 * 119.99688 * 180.02562 * 8 7 5 31 31 H 1.09000 * 109.47445 * 155.47273 * 13 4 3 32 32 H 1.09000 * 109.47008 * 35.47485 * 13 4 3 33 33 H 1.07990 * 120.83695 * 0.04375 * 15 14 13 34 34 H 1.08007 * 119.68925 * 179.72759 * 23 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1344 -0.2806 -1.3523 5 6 3.4822 -1.5578 -1.7028 6 1 4.1546 -1.7265 -2.5310 7 6 2.9706 -2.6359 -0.9936 8 7 1.9503 -2.4639 -0.1801 9 14 3.7302 -4.3307 -1.1937 10 1 5.1592 -4.2831 -0.7927 11 1 3.0073 -5.3018 -0.3337 12 1 3.6283 -4.7544 -2.6134 13 6 3.2509 0.8046 -2.3296 14 6 1.9190 1.0213 -3.0006 15 6 1.0997 2.0655 -2.6085 16 6 -0.1263 2.2267 -3.2592 17 6 -1.0432 3.3300 -2.8771 18 7 -0.8367 4.2484 -1.9228 19 7 -1.8700 5.0203 -1.9042 20 7 -2.7041 4.6235 -2.8007 21 1 -3.5621 5.0347 -2.9900 22 7 -2.2211 3.5938 -3.4065 23 6 -0.4772 1.3327 -4.2677 24 7 0.3373 0.3561 -4.6120 25 6 1.5014 0.1777 -4.0157 26 17 2.5244 -1.1340 -4.5125 27 1 -1.0500 0.0002 0.0000 28 1 3.0097 -0.7658 0.6844 29 1 3.0089 0.9768 0.3216 30 1 1.5930 -3.2172 0.3158 31 1 3.9967 0.5401 -3.0792 32 1 3.5550 1.7198 -1.8217 33 1 1.4004 2.7388 -1.8196 34 1 -1.4240 1.4437 -4.7755 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001588350415.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:35:06 Heat of formation + Delta-G solvation = 225.709415 kcal Electronic energy + Delta-G solvation = -23864.460923 eV Core-core repulsion = 20249.698170 eV Total energy + Delta-G solvation = -3614.762753 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 318.069 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -45.47579 -41.27493 -37.98298 -37.38234 -35.57428 -34.78981 -34.37677 -33.31764 -32.50062 -31.49604 -28.11369 -27.55028 -25.89404 -25.76273 -24.20781 -23.55392 -22.00696 -20.17447 -19.28289 -18.31724 -18.22378 -18.14672 -17.66497 -17.13950 -16.64859 -15.78448 -15.38179 -15.20810 -15.04166 -14.93807 -14.38426 -14.14248 -13.56474 -13.30778 -13.22634 -13.15384 -12.90718 -12.73729 -12.56099 -12.38500 -12.32905 -12.18790 -11.93780 -11.82384 -11.63866 -10.95351 -10.85465 -10.62487 -10.39688 -10.14548 -9.60291 -8.83662 -7.72221 -5.16923 -0.55085 0.13970 0.21047 1.02294 1.21736 1.41651 1.51038 1.53320 1.56614 2.40671 2.58407 2.60896 2.68728 2.72502 3.08715 3.42305 3.54689 3.82367 3.89045 3.94788 4.07091 4.16258 4.21275 4.43172 4.54565 4.72391 4.96604 5.01216 5.08158 5.19519 5.42354 5.43908 5.62504 5.71918 5.81066 6.39705 6.68066 7.10360 7.20079 7.46184 7.88801 8.30900 9.27965 Molecular weight = 318.07amu Principal moments of inertia in cm(-1) A = 0.018744 B = 0.004725 C = 0.004198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1493.428056 B = 5924.029514 C = 6667.784928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.313 4.313 2 C -0.099 4.099 3 C 0.269 3.731 4 N -0.580 5.580 5 C -0.234 4.234 6 H 0.080 0.920 7 C -0.038 4.038 8 N -0.914 5.914 9 Si 0.941 3.059 10 H -0.275 1.275 11 H -0.305 1.305 12 H -0.286 1.286 13 C 0.175 3.825 14 C -0.127 4.127 15 C -0.013 4.013 16 C -0.073 4.073 17 C 0.221 3.779 18 N -0.287 5.287 19 N -0.053 5.053 20 N -0.197 5.197 21 H 0.496 0.504 22 N -0.289 5.289 23 C 0.142 3.858 24 N -0.503 5.503 25 C 0.190 3.810 26 Cl -0.022 7.022 27 H 0.197 0.803 28 H 0.074 0.926 29 H 0.070 0.930 30 H 0.242 0.758 31 H 0.078 0.922 32 H 0.087 0.913 33 H 0.157 0.843 34 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.951 14.555 -6.081 16.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.332 4.332 2 C -0.102 4.102 3 C 0.144 3.856 4 N -0.298 5.298 5 C -0.364 4.364 6 H 0.098 0.902 7 C -0.234 4.234 8 N -0.560 5.560 9 Si 0.771 3.229 10 H -0.201 1.201 11 H -0.231 1.231 12 H -0.212 1.212 13 C 0.049 3.951 14 C -0.133 4.133 15 C -0.041 4.041 16 C -0.079 4.079 17 C -0.059 4.059 18 N -0.160 5.160 19 N -0.048 5.048 20 N -0.048 5.048 21 H 0.355 0.645 22 N -0.141 5.141 23 C -0.019 4.019 24 N -0.213 5.213 25 C 0.026 3.974 26 Cl 0.007 6.993 27 H 0.214 0.786 28 H 0.092 0.908 29 H 0.088 0.912 30 H 0.052 0.948 31 H 0.096 0.904 32 H 0.106 0.894 33 H 0.174 0.826 34 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -6.262 14.243 -6.317 16.792 hybrid contribution -0.584 -1.313 0.214 1.453 sum -6.846 12.931 -6.102 15.852 Atomic orbital electron populations 1.24495 0.95909 1.08599 1.04229 1.24457 0.95684 0.93444 0.96617 1.17864 0.82412 0.98341 0.87017 1.44431 1.73521 1.04865 1.06959 1.19383 1.19983 0.82475 1.14556 0.90195 1.25454 0.97041 0.99856 1.01029 1.70156 1.24263 1.29751 1.31814 0.85745 0.78345 0.81917 0.76893 1.20120 1.23143 1.21223 1.20295 0.90046 0.92712 0.92091 1.21765 1.03146 0.93775 0.94626 1.21502 0.90937 0.95318 0.96354 1.18242 0.94021 0.94969 1.00644 1.23195 0.91639 0.97334 0.93747 1.76108 1.17081 1.04243 1.18519 1.78858 0.96261 1.19684 1.09983 1.47762 1.19305 1.17363 1.20345 0.64484 1.74869 1.11211 1.05724 1.22320 1.22870 0.98216 0.87652 0.93166 1.67061 1.03615 1.21156 1.29475 1.21838 0.91049 0.91005 0.93538 1.98402 1.63937 1.46187 1.90806 0.78564 0.90816 0.91199 0.94842 0.90382 0.89440 0.82571 0.79541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.31 -14.11 19.25 74.32 1.43 -12.68 16 2 C -0.10 -4.56 10.49 31.12 0.33 -4.23 16 3 C 0.27 11.68 5.45 84.57 0.46 12.14 16 4 N -0.58 -25.18 2.52 -716.90 -1.81 -26.99 16 5 C -0.23 -11.32 7.75 84.03 0.65 -10.67 16 6 H 0.08 3.80 7.04 -2.91 -0.02 3.77 16 7 C -0.04 -1.97 5.01 84.86 0.43 -1.54 16 8 N -0.91 -50.60 9.22 21.65 0.20 -50.40 16 9 Si 0.94 43.66 29.58 68.60 2.03 45.69 16 10 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 11 H -0.30 -14.69 7.11 99.48 0.71 -13.98 16 12 H -0.29 -13.25 7.11 99.48 0.71 -12.55 16 13 C 0.18 6.18 5.41 85.63 0.46 6.64 16 14 C -0.13 -4.53 4.88 -19.78 -0.10 -4.63 16 15 C -0.01 -0.40 9.11 22.67 0.21 -0.19 16 16 C -0.07 -2.21 5.89 -19.94 -0.12 -2.32 16 17 C 0.22 5.96 7.95 137.38 1.09 7.05 16 18 N -0.29 -7.87 12.31 -52.19 -0.64 -8.51 16 19 N -0.05 -1.15 13.47 37.02 0.50 -0.65 16 20 N -0.20 -3.01 7.90 37.02 0.29 -2.72 16 21 H 0.50 2.16 8.96 -347.53 -3.12 -0.95 16 22 N -0.29 -6.18 12.11 -52.14 -0.63 -6.81 16 23 C 0.14 4.36 10.87 84.95 0.92 5.29 16 24 N -0.50 -18.46 10.33 -185.84 -1.92 -20.38 16 25 C 0.19 7.33 7.27 84.71 0.62 7.95 16 26 Cl -0.02 -0.87 24.98 -2.72 -0.07 -0.94 16 27 H 0.20 7.91 7.80 -4.42 -0.03 7.87 16 28 H 0.07 3.62 6.53 -2.39 -0.02 3.60 16 29 H 0.07 2.53 8.02 -2.39 -0.02 2.51 16 30 H 0.24 13.63 8.31 -92.71 -0.77 12.86 16 31 H 0.08 2.67 7.22 -2.39 -0.02 2.65 16 32 H 0.09 2.55 7.90 -2.39 -0.02 2.53 16 33 H 0.16 4.61 7.96 -2.92 -0.02 4.59 16 34 H 0.19 4.62 7.89 -2.91 -0.02 4.60 16 Total: -1.00 -65.37 320.71 2.40 -62.97 By element: Atomic # 1 Polarization: 7.88 SS G_CDS: -1.94 Total: 5.94 kcal Atomic # 6 Polarization: -3.59 SS G_CDS: 6.38 Total: 2.79 kcal Atomic # 7 Polarization: -112.44 SS G_CDS: -4.01 Total: -116.45 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 2.03 Total: 45.69 kcal Atomic # 17 Polarization: -0.87 SS G_CDS: -0.07 Total: -0.94 kcal Total: -65.37 2.40 -62.97 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001588350415.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 288.678 kcal (2) G-P(sol) polarization free energy of solvation -65.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 223.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.969 kcal (6) G-S(sol) free energy of system = (1) + (5) 225.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds