Wall clock time and date at job start Tue Mar 31 2020 11:53:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.47433 * 2 1 4 4 C 1.50699 * 109.47259 * 120.00390 * 2 1 3 5 5 H 1.07998 * 119.99868 * 119.99543 * 4 2 1 6 6 C 1.37871 * 120.00037 * 299.99593 * 4 2 1 7 7 N 1.31515 * 120.00078 * 0.02562 * 6 4 2 8 8 Si 1.86802 * 120.00225 * 180.02562 * 6 4 2 9 9 H 1.48502 * 109.46921 * 0.02562 * 8 6 4 10 10 H 1.48502 * 109.46957 * 120.00128 * 8 6 4 11 11 H 1.48493 * 109.47053 * 240.00128 * 8 6 4 12 12 O 1.45211 * 109.46757 * 240.00372 * 2 1 3 13 13 C 1.34222 * 116.99995 * 89.99992 * 12 2 1 14 14 O 1.20828 * 120.00314 * 359.97438 * 13 12 2 15 15 C 1.50702 * 120.00023 * 179.97438 * 13 12 2 16 16 C 1.50691 * 109.47317 * 179.97438 * 15 13 12 17 17 C 1.33725 * 122.07810 * 125.00223 * 16 15 13 18 18 S 1.76256 * 108.21809 * 179.77954 * 17 16 15 19 19 C 1.76168 * 89.83760 * 0.30412 * 18 17 16 20 20 C 1.47876 * 125.47264 * 179.97438 * 19 18 17 21 21 C 1.39977 * 120.55194 * 359.69107 * 20 19 18 22 22 C 1.38368 * 118.28566 * 180.02562 * 21 20 19 23 23 C 1.38338 * 119.30989 * 0.02562 * 22 21 20 24 24 N 1.31903 * 121.07354 * 0.02562 * 23 22 21 25 25 C 1.31719 * 121.87549 * 359.65540 * 24 23 22 26 26 N 1.30225 * 109.05975 * 359.69200 * 19 18 17 27 27 H 1.08995 * 109.47433 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.46544 * 299.99801 * 1 2 3 29 29 H 1.08997 * 109.47088 * 59.99758 * 1 2 3 30 30 H 0.96997 * 120.00553 * 180.02562 * 7 6 4 31 31 H 1.08999 * 109.46649 * 59.99649 * 15 13 12 32 32 H 1.09003 * 109.47214 * 300.00307 * 15 13 12 33 33 H 1.08003 * 125.88970 * 359.97438 * 17 16 15 34 34 H 1.07999 * 120.85920 * 0.02562 * 21 20 19 35 35 H 1.08009 * 120.34174 * 180.02562 * 22 21 20 36 36 H 1.08000 * 119.46560 * 180.02562 * 23 22 21 37 37 H 1.07998 * 119.71865 * 180.31910 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6532 -1.5886 1.1312 6 6 1.6994 -0.2395 2.4827 7 7 0.9429 0.8295 2.6034 8 14 2.3227 -1.1197 4.0078 9 1 3.1485 -2.2858 3.6036 10 1 3.1474 -0.1859 4.8159 11 1 1.1680 -1.5868 4.8164 12 8 2.0139 -0.6845 -1.1857 13 6 2.2170 0.0640 -2.2812 14 8 1.9973 1.2518 -2.2506 15 6 2.7191 -0.5769 -3.5493 16 6 2.8608 0.4730 -4.6209 17 6 4.0106 0.6699 -5.2747 18 16 3.7662 1.9689 -6.4405 19 6 2.0944 2.1259 -5.9076 20 6 1.1099 3.0906 -6.4432 21 6 1.4708 3.9876 -7.4554 22 6 0.5127 4.8703 -7.9215 23 6 -0.7589 4.8389 -7.3775 24 7 -1.0703 3.9829 -6.4235 25 6 -0.1951 3.1192 -5.9511 26 7 1.8630 1.2518 -4.9704 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3632 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 0.7089 1.1612 3.4844 31 1 2.0103 -1.3371 -3.8774 32 1 3.6882 -1.0400 -3.3634 33 1 4.9296 0.1246 -5.1177 34 1 2.4714 3.9907 -7.8619 35 1 0.7550 5.5765 -8.7020 36 1 -1.5088 5.5265 -7.7397 37 1 -0.4891 2.4303 -5.1731 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001649151272.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:53:06 Heat of formation + Delta-G solvation = -7.078355 kcal Electronic energy + Delta-G solvation = -22862.705437 eV Core-core repulsion = 19311.139548 eV Total energy + Delta-G solvation = -3551.565890 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.082 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.55047 -39.94937 -38.91662 -35.62812 -33.69508 -33.22754 -32.40879 -30.99000 -29.56311 -28.20356 -25.63543 -25.28246 -23.89508 -22.84348 -21.63944 -19.86514 -19.35493 -18.13888 -17.32125 -16.85381 -16.60113 -16.28975 -16.11375 -15.44687 -15.05294 -14.68583 -14.64819 -14.26749 -13.83476 -13.63074 -13.41023 -13.32393 -12.82122 -12.72446 -12.21646 -11.90768 -11.73853 -11.55601 -11.12424 -11.05249 -10.79385 -10.50820 -10.32308 -10.26092 -10.03761 -9.88925 -9.59963 -9.52636 -9.47475 -9.38069 -8.85879 -8.47255 -8.43393 -6.16122 -4.23116 -0.02250 0.94275 1.09522 1.21742 1.47819 2.69796 3.07971 3.24637 3.31237 3.36169 3.58574 3.65360 3.81556 4.24701 4.36145 4.49401 4.55012 4.63516 4.78098 4.96169 5.10177 5.16818 5.18868 5.42921 5.47713 5.61453 5.68562 5.72936 5.87038 6.06843 6.36792 6.70075 6.94922 6.97254 7.22761 7.60308 7.63382 7.71910 7.77558 7.99060 8.17957 8.68738 8.92752 9.42373 10.91291 Molecular weight = 318.08amu Principal moments of inertia in cm(-1) A = 0.018752 B = 0.002933 C = 0.002633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1492.788911 B = 9543.343824 C =10630.393206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.217 3.783 3 H 0.045 0.955 4 C -0.520 4.520 5 H 0.069 0.931 6 C 0.061 3.939 7 N -0.888 5.888 8 Si 0.911 3.089 9 H -0.270 1.270 10 H -0.282 1.282 11 H -0.281 1.281 12 O -0.358 6.358 13 C 0.454 3.546 14 O -0.504 6.504 15 C -0.046 4.046 16 C 0.092 3.908 17 C -0.236 4.236 18 S 0.079 5.921 19 C 0.116 3.884 20 C -0.073 4.073 21 C -0.057 4.057 22 C -0.173 4.173 23 C 0.109 3.891 24 N -0.481 5.481 25 C 0.153 3.847 26 N -0.427 5.427 27 H 0.036 0.964 28 H 0.098 0.902 29 H 0.017 0.983 30 H 0.265 0.735 31 H 0.118 0.882 32 H 0.118 0.882 33 H 0.184 0.816 34 H 0.136 0.864 35 H 0.141 0.859 36 H 0.160 0.840 37 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.787 3.969 -23.248 23.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.165 3.835 3 H 0.063 0.937 4 C -0.558 4.558 5 H 0.087 0.913 6 C -0.141 4.141 7 N -0.526 5.526 8 Si 0.738 3.262 9 H -0.195 1.195 10 H -0.208 1.208 11 H -0.207 1.207 12 O -0.275 6.275 13 C 0.295 3.705 14 O -0.393 6.393 15 C -0.086 4.086 16 C -0.041 4.041 17 C -0.375 4.375 18 S 0.335 5.665 19 C -0.161 4.161 20 C -0.079 4.079 21 C -0.085 4.085 22 C -0.192 4.192 23 C -0.049 4.049 24 N -0.189 5.189 25 C -0.007 4.007 26 N -0.139 5.139 27 H 0.055 0.945 28 H 0.117 0.883 29 H 0.036 0.964 30 H 0.075 0.925 31 H 0.136 0.864 32 H 0.136 0.864 33 H 0.201 0.799 34 H 0.154 0.846 35 H 0.159 0.841 36 H 0.177 0.823 37 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 2.967 4.881 -23.204 23.896 hybrid contribution 1.196 -0.863 1.218 1.913 sum 4.163 4.018 -21.985 22.734 Atomic orbital electron populations 1.22147 0.97547 1.00060 1.01451 1.20611 0.91412 0.93830 0.77687 0.93686 1.21073 1.32399 1.13424 0.88929 0.91284 1.24897 0.94970 0.95116 0.99081 1.69915 1.36099 1.22600 1.24031 0.86228 0.78626 0.79470 0.81853 1.19484 1.20799 1.20706 1.86463 1.76081 1.43661 1.21309 1.22863 0.75683 0.86157 0.85807 1.90634 1.47615 1.16728 1.84306 1.19910 1.04928 0.95632 0.88175 1.19538 0.88082 0.97847 0.98632 1.26766 1.03434 1.04277 1.02998 1.84662 1.10940 1.32817 1.38044 1.25493 0.94291 0.99102 0.97186 1.18849 0.93931 0.96426 0.98660 1.21592 1.00006 0.93069 0.93840 1.22033 0.94449 1.00479 1.02281 1.23001 0.95230 0.95191 0.91458 1.67831 1.35946 1.04359 1.10759 1.23169 0.87410 0.94142 0.96009 1.66223 1.32599 1.04522 1.10561 0.94483 0.88336 0.96389 0.92474 0.86377 0.86425 0.79891 0.84614 0.84078 0.82280 0.81156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.03 9.33 37.16 0.35 -3.69 16 2 C 0.22 5.94 2.56 -27.88 -0.07 5.87 16 3 H 0.05 1.37 7.16 -51.93 -0.37 1.00 16 4 C -0.52 -14.78 8.90 -34.44 -0.31 -15.09 16 5 H 0.07 1.92 7.81 -52.49 -0.41 1.51 16 6 C 0.06 1.71 5.30 -17.82 -0.09 1.62 16 7 N -0.89 -25.67 11.32 55.43 0.63 -25.05 16 8 Si 0.91 21.26 29.54 -169.99 -5.02 16.24 16 9 H -0.27 -6.18 7.11 56.52 0.40 -5.77 16 10 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 11 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 12 O -0.36 -8.59 9.86 -39.24 -0.39 -8.98 16 13 C 0.45 9.57 7.89 36.01 0.28 9.85 16 14 O -0.50 -12.29 14.64 -18.75 -0.27 -12.56 16 15 C -0.05 -0.67 6.28 -29.04 -0.18 -0.85 16 16 C 0.09 1.34 5.61 -84.40 -0.47 0.87 16 17 C -0.24 -2.72 11.02 29.15 0.32 -2.40 16 18 S 0.08 0.83 22.49 -107.50 -2.42 -1.58 16 19 C 0.12 1.58 7.36 -14.29 -0.11 1.47 16 20 C -0.07 -0.90 5.89 -104.83 -0.62 -1.51 16 21 C -0.06 -0.52 9.73 -38.88 -0.38 -0.90 16 22 C -0.17 -1.32 10.10 -39.50 -0.40 -1.72 16 23 C 0.11 1.00 11.17 -17.48 -0.20 0.80 16 24 N -0.48 -6.10 10.35 -12.92 -0.13 -6.24 16 25 C 0.15 2.07 10.85 -17.13 -0.19 1.88 16 26 N -0.43 -6.90 9.24 -7.55 -0.07 -6.97 16 27 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 28 H 0.10 2.74 6.07 -51.93 -0.32 2.43 16 29 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.27 7.19 8.31 -40.82 -0.34 6.85 16 31 H 0.12 1.48 8.14 -51.93 -0.42 1.06 16 32 H 0.12 1.32 8.01 -51.93 -0.42 0.91 16 33 H 0.18 1.51 8.06 -52.48 -0.42 1.09 16 34 H 0.14 0.94 7.42 -52.49 -0.39 0.55 16 35 H 0.14 0.60 8.06 -52.48 -0.42 0.18 16 36 H 0.16 0.95 8.06 -52.49 -0.42 0.52 16 37 H 0.17 2.49 7.83 -52.49 -0.41 2.08 16 LS Contribution 341.94 15.07 5.15 5.15 Total: -1.00 -34.48 341.94 -8.56 -43.04 By element: Atomic # 1 Polarization: 4.72 SS G_CDS: -3.98 Total: 0.74 kcal Atomic # 6 Polarization: -1.73 SS G_CDS: -2.06 Total: -3.79 kcal Atomic # 7 Polarization: -38.68 SS G_CDS: 0.42 Total: -38.25 kcal Atomic # 8 Polarization: -20.88 SS G_CDS: -0.66 Total: -21.54 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Atomic # 16 Polarization: 0.83 SS G_CDS: -2.42 Total: -1.58 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -34.48 -8.56 -43.04 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001649151272.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.965 kcal (2) G-P(sol) polarization free energy of solvation -34.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.043 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds