Wall clock time and date at job start Tue Mar 31 2020 12:27:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.36761 * 127.14447 * 2 1 4 4 N 1.30294 * 107.31712 * 179.97438 * 3 2 1 5 5 N 1.28530 * 110.08232 * 359.75659 * 4 3 2 6 6 C 1.31290 * 109.85309 * 0.39718 * 5 4 3 7 7 S 1.76200 * 126.48215 * 179.87866 * 6 5 4 8 8 C 1.80997 * 100.00158 * 4.70966 * 7 6 5 9 9 C 1.50697 * 109.47190 * 184.96533 * 8 7 6 10 10 O 1.21280 * 119.99889 * 354.95746 * 9 8 7 11 11 N 1.34780 * 120.00177 * 174.96134 * 9 8 7 12 12 C 1.37142 * 119.99890 * 3.37197 * 11 9 8 13 13 H 1.08007 * 120.00134 * 305.55267 * 12 11 9 14 14 C 1.38882 * 120.00000 * 125.55220 * 12 11 9 15 15 N 1.31424 * 119.99967 * 181.40349 * 14 12 11 16 16 Si 1.86796 * 120.00181 * 1.40796 * 14 12 11 17 17 H 1.48504 * 109.47246 * 95.25400 * 16 14 12 18 18 H 1.48493 * 109.47396 * 215.25447 * 16 14 12 19 19 H 1.48500 * 109.47032 * 335.25291 * 16 14 12 20 20 C 1.39786 * 119.99868 * 183.37660 * 11 9 8 21 21 C 1.38967 * 120.07306 * 171.67479 * 20 11 9 22 22 C 1.38083 * 119.92048 * 179.97438 * 21 20 11 23 23 C 1.38313 * 120.07371 * 359.97438 * 22 21 20 24 24 C 1.38302 * 120.16169 * 359.97438 * 23 22 21 25 25 C 1.38089 * 120.07364 * 0.02562 * 24 23 22 26 26 H 1.08997 * 109.47882 * 270.00626 * 1 2 3 27 27 H 1.09004 * 109.47397 * 30.00800 * 1 2 3 28 28 H 1.09007 * 109.47484 * 150.00291 * 1 2 3 29 29 H 1.08001 * 126.34113 * 359.97438 * 3 2 1 30 30 H 1.09000 * 109.47121 * 64.96059 * 8 7 6 31 31 H 1.09002 * 109.46798 * 304.96293 * 8 7 6 32 32 H 0.96999 * 119.99909 * 179.97438 * 15 14 12 33 33 H 1.08001 * 120.04132 * 359.70320 * 21 20 11 34 34 H 1.07992 * 119.96399 * 179.97438 * 22 21 20 35 35 H 1.08002 * 119.91758 * 179.97438 * 23 22 21 36 36 H 1.07993 * 119.96582 * 179.97438 * 24 23 22 37 37 H 1.08003 * 120.03455 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2907 1.0901 0.0000 4 7 3.5164 0.6482 0.0006 5 7 3.5222 -0.6371 0.0060 6 6 2.2893 -1.0885 0.0007 7 16 1.7926 -2.7790 0.0020 8 6 3.4076 -3.5810 0.1584 9 6 3.2383 -5.0751 0.0588 10 8 2.1271 -5.5562 -0.0102 11 7 4.3217 -5.8768 0.0464 12 6 5.5745 -5.3389 0.1940 13 1 5.9030 -4.5469 -0.4629 14 6 6.4209 -5.8124 1.1881 15 7 7.6110 -5.2782 1.3473 16 14 5.8677 -7.2088 2.2987 17 1 6.3683 -8.4985 1.7591 18 1 6.4110 -6.9996 3.6648 19 1 4.3841 -7.2383 2.3552 20 6 4.1682 -7.2566 -0.1170 21 6 5.2838 -8.0641 -0.3034 22 6 5.1286 -9.4267 -0.4640 23 6 3.8648 -9.9881 -0.4389 24 6 2.7524 -9.1877 -0.2525 25 6 2.9002 -7.8242 -0.0913 26 1 -0.3635 0.0001 1.0276 27 1 -0.3634 0.8899 -0.5140 28 1 -0.3634 -0.8900 -0.5138 29 1 1.9837 2.1256 -0.0004 30 1 3.8467 -3.3286 1.1236 31 1 4.0637 -3.2356 -0.6406 32 1 8.2020 -5.6087 2.0419 33 1 6.2706 -7.6258 -0.3271 34 1 5.9950 -10.0548 -0.6093 35 1 3.7463 -11.0542 -0.5651 36 1 1.7671 -9.6293 -0.2339 37 1 2.0311 -7.1997 0.0537 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000006063154.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:27:50 Heat of formation + Delta-G solvation = 108.222431 kcal Electronic energy + Delta-G solvation = -23670.762726 eV Core-core repulsion = 20156.489405 eV Total energy + Delta-G solvation = -3514.273321 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.089 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.76749 -40.20031 -37.67722 -35.28053 -35.01662 -32.29085 -30.92094 -30.31887 -30.15095 -28.08109 -27.74293 -25.33362 -22.77524 -22.38146 -22.07692 -21.45286 -19.60742 -18.39608 -17.78457 -16.62102 -16.39246 -16.15605 -15.92336 -15.53488 -15.15627 -14.93515 -14.14254 -13.85203 -13.78920 -13.64654 -13.27415 -13.04859 -12.99231 -12.87163 -12.56028 -12.30822 -11.95204 -11.56037 -11.41532 -11.09155 -10.83766 -10.68932 -10.37323 -10.31732 -10.16742 -10.11355 -9.95888 -9.46933 -9.06479 -8.64842 -8.10039 -7.52154 -7.16427 -6.59676 -4.58252 1.15474 1.66061 1.93253 2.09178 2.22213 2.59763 2.89590 3.11123 3.20878 3.29876 3.34413 3.99309 4.06221 4.38014 4.52121 4.52989 4.78710 4.81350 5.09465 5.18004 5.26742 5.55587 5.59622 5.64157 5.66024 5.82965 5.94712 6.06068 6.22202 6.31652 6.47018 6.66624 6.72812 7.09583 7.15588 7.21795 7.28473 7.65567 7.88515 8.09246 8.62703 8.68348 8.93986 9.19412 10.42459 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.018641 B = 0.004121 C = 0.003542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1501.731731 B = 6792.607212 C = 7904.279807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.472 5.472 3 C 0.148 3.852 4 N -0.287 5.287 5 N -0.288 5.288 6 C 0.150 3.850 7 S 0.051 5.949 8 C -0.107 4.107 9 C 0.515 3.485 10 O -0.551 6.551 11 N -0.396 5.396 12 C -0.377 4.377 13 H 0.114 0.886 14 C 0.085 3.915 15 N -0.849 5.849 16 Si 0.871 3.129 17 H -0.253 1.253 18 H -0.289 1.289 19 H -0.257 1.257 20 C 0.157 3.843 21 C -0.157 4.157 22 C -0.105 4.105 23 C -0.169 4.169 24 C -0.109 4.109 25 C -0.181 4.181 26 H 0.084 0.916 27 H 0.093 0.907 28 H 0.093 0.907 29 H 0.220 0.780 30 H 0.128 0.872 31 H 0.127 0.873 32 H 0.281 0.719 33 H 0.140 0.860 34 H 0.115 0.885 35 H 0.109 0.891 36 H 0.113 0.887 37 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.822 5.126 -1.736 13.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.167 5.167 3 C -0.142 4.142 4 N -0.126 5.126 5 N -0.132 5.132 6 C -0.225 4.225 7 S 0.278 5.722 8 C -0.258 4.258 9 C 0.305 3.695 10 O -0.435 6.435 11 N -0.105 5.105 12 C -0.503 4.503 13 H 0.131 0.869 14 C -0.126 4.126 15 N -0.481 5.481 16 Si 0.697 3.303 17 H -0.178 1.178 18 H -0.216 1.216 19 H -0.181 1.181 20 C 0.061 3.939 21 C -0.177 4.177 22 C -0.124 4.124 23 C -0.188 4.188 24 C -0.128 4.128 25 C -0.201 4.201 26 H 0.103 0.897 27 H 0.111 0.889 28 H 0.112 0.888 29 H 0.236 0.764 30 H 0.146 0.854 31 H 0.145 0.855 32 H 0.091 0.909 33 H 0.158 0.842 34 H 0.133 0.867 35 H 0.127 0.873 36 H 0.131 0.869 37 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -12.698 4.541 -1.734 13.597 hybrid contribution 0.058 0.042 0.713 0.717 sum -12.640 4.583 -1.021 13.484 Atomic orbital electron populations 1.22117 0.75081 1.05287 1.04373 1.46516 1.08801 1.05366 1.56042 1.26668 0.86779 0.94584 1.06165 1.73952 1.18255 1.03470 1.16940 1.74829 1.15499 1.02893 1.19984 1.27433 0.90226 0.97369 1.07436 1.85767 1.10577 0.84121 1.91742 1.23509 0.96735 0.95445 1.10141 1.19877 0.84001 0.87486 0.78135 1.90262 1.25459 1.74610 1.53202 1.41246 1.07121 1.02644 1.59462 1.19093 0.89279 1.23240 1.18668 0.86868 1.25469 0.94905 0.96794 0.95397 1.69652 1.07288 1.39489 1.31721 0.86991 0.80971 0.82765 0.79561 1.17777 1.21610 1.18113 1.18450 0.93854 0.84780 0.96780 1.21052 0.99403 0.93419 1.03836 1.20834 0.96932 0.94359 1.00266 1.20942 0.93029 0.99001 1.05808 1.21019 0.97874 0.93772 1.00118 1.22734 0.98878 0.95774 1.02707 0.89745 0.88862 0.88834 0.76368 0.85358 0.85519 0.90876 0.84223 0.86744 0.87258 0.86855 0.80480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.50 11.09 59.84 0.66 1.16 16 2 N -0.47 -5.61 3.21 -125.58 -0.40 -6.01 16 3 C 0.15 1.75 12.80 -88.95 -1.14 0.62 16 4 N -0.29 -4.87 12.17 29.90 0.36 -4.51 16 5 N -0.29 -5.40 11.61 30.68 0.36 -5.05 16 6 C 0.15 2.38 8.06 -88.33 -0.71 1.67 16 7 S 0.05 0.81 20.95 -107.50 -2.25 -1.44 16 8 C -0.11 -2.06 4.56 36.00 0.16 -1.90 16 9 C 0.51 11.24 7.59 -10.99 -0.08 11.15 16 10 O -0.55 -12.14 12.29 5.56 0.07 -12.07 16 11 N -0.40 -9.34 2.30 -58.98 -0.14 -9.48 16 12 C -0.38 -9.46 8.01 -14.94 -0.12 -9.58 16 13 H 0.11 2.99 7.70 -52.48 -0.40 2.59 16 14 C 0.09 2.20 4.61 -17.49 -0.08 2.12 16 15 N -0.85 -22.80 13.96 55.49 0.77 -22.03 16 16 Si 0.87 20.65 23.84 -169.99 -4.05 16.59 16 17 H -0.25 -5.75 6.14 56.52 0.35 -5.40 16 18 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 19 H -0.26 -6.37 6.48 56.52 0.37 -6.01 16 20 C 0.16 3.62 4.12 -83.70 -0.35 3.27 16 21 C -0.16 -3.45 5.57 -39.37 -0.22 -3.67 16 22 C -0.11 -2.00 9.76 -39.61 -0.39 -2.39 16 23 C -0.17 -2.96 10.04 -39.53 -0.40 -3.36 16 24 C -0.11 -2.01 10.04 -39.61 -0.40 -2.40 16 25 C -0.18 -3.88 9.03 -39.37 -0.36 -4.23 16 26 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.09 0.34 8.14 -51.93 -0.42 -0.09 16 28 H 0.09 0.63 7.86 -51.93 -0.41 0.22 16 29 H 0.22 1.40 8.06 -52.49 -0.42 0.97 16 30 H 0.13 2.54 8.14 -51.92 -0.42 2.12 16 31 H 0.13 2.48 7.73 -51.92 -0.40 2.08 16 32 H 0.28 7.07 8.31 -40.82 -0.34 6.73 16 33 H 0.14 3.24 5.70 -52.49 -0.30 2.94 16 34 H 0.11 1.87 8.06 -52.49 -0.42 1.45 16 35 H 0.11 1.56 8.06 -52.49 -0.42 1.14 16 36 H 0.11 1.73 8.06 -52.49 -0.42 1.31 16 37 H 0.18 3.88 4.58 -55.98 -0.26 3.63 16 LS Contribution 323.89 15.07 4.88 4.88 Total: -1.00 -31.63 323.89 -7.76 -39.39 By element: Atomic # 1 Polarization: 11.21 SS G_CDS: -3.95 Total: 7.26 kcal Atomic # 6 Polarization: -4.14 SS G_CDS: -3.41 Total: -7.55 kcal Atomic # 7 Polarization: -48.02 SS G_CDS: 0.96 Total: -47.07 kcal Atomic # 8 Polarization: -12.14 SS G_CDS: 0.07 Total: -12.07 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -4.05 Total: 16.59 kcal Atomic # 16 Polarization: 0.81 SS G_CDS: -2.25 Total: -1.44 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -31.63 -7.76 -39.39 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000006063154.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.612 kcal (2) G-P(sol) polarization free energy of solvation -31.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 115.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.389 kcal (6) G-S(sol) free energy of system = (1) + (5) 108.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds