Wall clock time and date at job start Tue Mar 31 2020 12:27:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.36761 * 127.14447 * 2 1 4 4 N 1.30294 * 107.31712 * 179.97438 * 3 2 1 5 5 N 1.28530 * 110.08232 * 359.75659 * 4 3 2 6 6 C 1.31290 * 109.85309 * 0.39718 * 5 4 3 7 7 S 1.76200 * 126.48215 * 179.87866 * 6 5 4 8 8 C 1.80997 * 100.00158 * 4.70966 * 7 6 5 9 9 C 1.50697 * 109.47190 * 184.96533 * 8 7 6 10 10 O 1.21280 * 119.99889 * 354.95746 * 9 8 7 11 11 N 1.34780 * 120.00177 * 174.96134 * 9 8 7 12 12 C 1.37142 * 119.99890 * 3.37197 * 11 9 8 13 13 H 1.08007 * 120.00134 * 305.55267 * 12 11 9 14 14 C 1.38882 * 120.00000 * 125.55220 * 12 11 9 15 15 N 1.31424 * 119.99967 * 181.40349 * 14 12 11 16 16 Si 1.86796 * 120.00181 * 1.40796 * 14 12 11 17 17 H 1.48504 * 109.47246 * 95.25400 * 16 14 12 18 18 H 1.48493 * 109.47396 * 215.25447 * 16 14 12 19 19 H 1.48500 * 109.47032 * 335.25291 * 16 14 12 20 20 C 1.39786 * 119.99868 * 183.37660 * 11 9 8 21 21 C 1.38967 * 120.07306 * 171.67479 * 20 11 9 22 22 C 1.38083 * 119.92048 * 179.97438 * 21 20 11 23 23 C 1.38313 * 120.07371 * 359.97438 * 22 21 20 24 24 C 1.38302 * 120.16169 * 359.97438 * 23 22 21 25 25 C 1.38089 * 120.07364 * 0.02562 * 24 23 22 26 26 H 1.08997 * 109.47882 * 270.00626 * 1 2 3 27 27 H 1.09004 * 109.47397 * 30.00800 * 1 2 3 28 28 H 1.09007 * 109.47484 * 150.00291 * 1 2 3 29 29 H 1.08001 * 126.34113 * 359.97438 * 3 2 1 30 30 H 1.09000 * 109.47121 * 64.96059 * 8 7 6 31 31 H 1.09002 * 109.46798 * 304.96293 * 8 7 6 32 32 H 0.96999 * 119.99909 * 179.97438 * 15 14 12 33 33 H 1.08001 * 120.04132 * 359.70320 * 21 20 11 34 34 H 1.07992 * 119.96399 * 179.97438 * 22 21 20 35 35 H 1.08002 * 119.91758 * 179.97438 * 23 22 21 36 36 H 1.07993 * 119.96582 * 179.97438 * 24 23 22 37 37 H 1.08003 * 120.03455 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2907 1.0901 0.0000 4 7 3.5164 0.6482 0.0006 5 7 3.5222 -0.6371 0.0060 6 6 2.2893 -1.0885 0.0007 7 16 1.7926 -2.7790 0.0020 8 6 3.4076 -3.5810 0.1584 9 6 3.2383 -5.0751 0.0588 10 8 2.1271 -5.5562 -0.0102 11 7 4.3217 -5.8768 0.0464 12 6 5.5745 -5.3389 0.1940 13 1 5.9030 -4.5469 -0.4629 14 6 6.4209 -5.8124 1.1881 15 7 7.6110 -5.2782 1.3473 16 14 5.8677 -7.2088 2.2987 17 1 6.3683 -8.4985 1.7591 18 1 6.4110 -6.9996 3.6648 19 1 4.3841 -7.2383 2.3552 20 6 4.1682 -7.2566 -0.1170 21 6 5.2838 -8.0641 -0.3034 22 6 5.1286 -9.4267 -0.4640 23 6 3.8648 -9.9881 -0.4389 24 6 2.7524 -9.1877 -0.2525 25 6 2.9002 -7.8242 -0.0913 26 1 -0.3635 0.0001 1.0276 27 1 -0.3634 0.8899 -0.5140 28 1 -0.3634 -0.8900 -0.5138 29 1 1.9837 2.1256 -0.0004 30 1 3.8467 -3.3286 1.1236 31 1 4.0637 -3.2356 -0.6406 32 1 8.2020 -5.6087 2.0419 33 1 6.2706 -7.6258 -0.3271 34 1 5.9950 -10.0548 -0.6093 35 1 3.7463 -11.0542 -0.5651 36 1 1.7671 -9.6293 -0.2339 37 1 2.0311 -7.1997 0.0537 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000006063154.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:27:49 Heat of formation + Delta-G solvation = 89.820599 kcal Electronic energy + Delta-G solvation = -23671.560689 eV Core-core repulsion = 20156.489405 eV Total energy + Delta-G solvation = -3515.071285 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.089 amu Computer time = 1.72 seconds Orbital eigenvalues (eV) -43.85651 -41.90574 -39.27777 -37.04290 -35.96050 -34.24212 -32.32564 -31.77070 -31.58847 -29.66876 -28.47092 -27.23142 -24.00835 -23.68624 -23.34055 -22.97594 -21.36403 -20.05440 -18.95491 -18.27425 -17.76678 -17.39965 -17.24721 -17.04792 -16.66303 -16.20203 -15.90040 -15.39822 -15.22115 -14.88038 -14.63783 -14.55028 -14.33382 -14.12764 -14.08068 -13.70395 -13.59438 -13.20710 -12.74214 -12.66520 -12.50000 -12.09818 -12.03099 -11.90883 -11.38551 -11.34022 -11.27367 -11.05341 -10.92611 -10.33432 -9.66912 -8.92449 -8.76927 -8.55921 -6.58452 -0.11362 0.35611 0.52426 0.61419 0.82223 1.22798 1.28311 1.37862 1.62602 1.74063 1.76642 2.10418 2.35779 2.70414 3.06086 3.53495 3.69390 3.83706 4.01589 4.14912 4.18643 4.19104 4.37047 4.41071 4.48704 4.65949 4.65991 4.67682 4.75946 4.83502 4.94195 5.21066 5.44871 5.54995 5.64248 5.71036 5.82444 5.89973 5.98379 6.33769 6.73456 7.05752 7.35457 7.56444 8.46388 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.018641 B = 0.004121 C = 0.003542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1501.731731 B = 6792.607212 C = 7904.279807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.063 3.937 2 N -0.464 5.464 3 C 0.179 3.821 4 N -0.344 5.344 5 N -0.337 5.337 6 C 0.131 3.869 7 S 0.086 5.914 8 C -0.107 4.107 9 C 0.512 3.488 10 O -0.553 6.553 11 N -0.410 5.410 12 C -0.367 4.367 13 H 0.087 0.913 14 C 0.056 3.944 15 N -0.887 5.887 16 Si 0.920 3.080 17 H -0.235 1.235 18 H -0.291 1.291 19 H -0.273 1.273 20 C 0.127 3.873 21 C -0.180 4.180 22 C -0.106 4.106 23 C -0.154 4.154 24 C -0.103 4.103 25 C -0.199 4.199 26 H 0.101 0.899 27 H 0.133 0.867 28 H 0.091 0.909 29 H 0.276 0.724 30 H 0.114 0.886 31 H 0.114 0.886 32 H 0.285 0.715 33 H 0.118 0.882 34 H 0.143 0.857 35 H 0.155 0.845 36 H 0.150 0.850 37 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.563 4.102 -1.809 16.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.158 5.158 3 C -0.112 4.112 4 N -0.182 5.182 5 N -0.182 5.182 6 C -0.246 4.246 7 S 0.313 5.687 8 C -0.258 4.258 9 C 0.302 3.698 10 O -0.438 6.438 11 N -0.121 5.121 12 C -0.493 4.493 13 H 0.104 0.896 14 C -0.151 4.151 15 N -0.521 5.521 16 Si 0.746 3.254 17 H -0.159 1.159 18 H -0.219 1.219 19 H -0.198 1.198 20 C 0.032 3.968 21 C -0.201 4.201 22 C -0.124 4.124 23 C -0.173 4.173 24 C -0.121 4.121 25 C -0.219 4.219 26 H 0.119 0.881 27 H 0.152 0.848 28 H 0.110 0.890 29 H 0.292 0.708 30 H 0.133 0.867 31 H 0.132 0.868 32 H 0.095 0.905 33 H 0.136 0.864 34 H 0.161 0.839 35 H 0.173 0.827 36 H 0.168 0.832 37 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -15.464 3.509 -1.821 15.961 hybrid contribution 0.733 0.420 0.639 1.059 sum -14.731 3.929 -1.182 15.292 Atomic orbital electron populations 1.22589 0.71786 1.07250 1.06127 1.46841 1.10578 1.03926 1.54465 1.27698 0.85341 0.96378 1.01742 1.73839 1.21394 1.02924 1.20056 1.74716 1.17570 1.04290 1.21575 1.27334 0.90634 0.98062 1.08560 1.85384 1.07059 0.84135 1.92119 1.23297 0.99304 0.94408 1.08828 1.20166 0.83734 0.88302 0.77590 1.90249 1.25249 1.75005 1.53263 1.41299 1.06682 1.03575 1.60513 1.18819 0.90092 1.22499 1.17920 0.89562 1.25903 0.94787 0.98245 0.96206 1.69716 1.08367 1.41107 1.32939 0.86242 0.79373 0.81804 0.78009 1.15865 1.21880 1.19796 1.18723 0.95103 0.84286 0.98680 1.21053 0.98151 0.94993 1.05866 1.21248 0.99047 0.93234 0.98889 1.21438 0.91733 1.01149 1.02947 1.21456 1.00156 0.92431 0.98075 1.22774 0.97776 0.97450 1.03896 0.88053 0.84843 0.89023 0.70849 0.86750 0.86821 0.90502 0.86399 0.83895 0.82719 0.83196 0.81429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.63 11.09 127.77 1.42 2.04 16 2 N -0.46 -10.11 3.21 -551.23 -1.77 -11.88 16 3 C 0.18 3.84 12.80 179.77 2.30 6.14 16 4 N -0.34 -11.73 12.17 -59.32 -0.72 -12.45 16 5 N -0.34 -13.17 11.61 -56.85 -0.66 -13.83 16 6 C 0.13 4.18 8.06 179.55 1.45 5.63 16 7 S 0.09 2.81 20.95 -56.49 -1.18 1.62 16 8 C -0.11 -4.39 4.56 71.23 0.32 -4.07 16 9 C 0.51 23.31 7.59 87.66 0.67 23.97 16 10 O -0.55 -24.85 12.29 -3.03 -0.04 -24.89 16 11 N -0.41 -20.21 2.30 -458.90 -1.06 -21.27 16 12 C -0.37 -19.54 8.01 84.02 0.67 -18.87 16 13 H 0.09 4.96 7.70 -2.91 -0.02 4.94 16 14 C 0.06 3.01 4.61 84.91 0.39 3.40 16 15 N -0.89 -49.72 13.96 21.65 0.30 -49.42 16 16 Si 0.92 43.64 23.84 68.60 1.64 45.28 16 17 H -0.23 -10.30 6.14 99.48 0.61 -9.69 16 18 H -0.29 -13.68 7.11 99.48 0.71 -12.97 16 19 H -0.27 -13.58 6.48 99.48 0.64 -12.94 16 20 C 0.13 5.90 4.12 38.22 0.16 6.06 16 21 C -0.18 -7.88 5.57 22.41 0.12 -7.76 16 22 C -0.11 -3.73 9.76 22.25 0.22 -3.51 16 23 C -0.15 -4.72 10.04 22.30 0.22 -4.49 16 24 C -0.10 -3.43 10.04 22.25 0.22 -3.20 16 25 C -0.20 -8.34 9.03 22.40 0.20 -8.14 16 26 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16 27 H 0.13 0.31 8.14 -2.39 -0.02 0.29 16 28 H 0.09 1.00 7.86 -2.38 -0.02 0.98 16 29 H 0.28 2.22 8.06 -2.91 -0.02 2.20 16 30 H 0.11 4.93 8.14 -2.40 -0.02 4.91 16 31 H 0.11 4.89 7.73 -2.39 -0.02 4.87 16 32 H 0.28 14.87 8.31 -92.71 -0.77 14.10 16 33 H 0.12 5.61 5.70 -2.91 -0.02 5.60 16 34 H 0.14 4.14 8.06 -2.91 -0.02 4.12 16 35 H 0.16 3.40 8.06 -2.91 -0.02 3.37 16 36 H 0.15 3.85 8.06 -2.91 -0.02 3.83 16 37 H 0.17 7.31 4.58 -58.30 -0.27 7.04 16 Total: -1.00 -73.83 323.89 5.57 -68.25 By element: Atomic # 1 Polarization: 20.67 SS G_CDS: 0.70 Total: 21.37 kcal Atomic # 6 Polarization: -11.16 SS G_CDS: 8.37 Total: -2.79 kcal Atomic # 7 Polarization: -104.94 SS G_CDS: -3.91 Total: -108.85 kcal Atomic # 8 Polarization: -24.85 SS G_CDS: -0.04 Total: -24.89 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 1.64 Total: 45.28 kcal Atomic # 16 Polarization: 2.81 SS G_CDS: -1.18 Total: 1.62 kcal Total: -73.83 5.57 -68.25 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000006063154.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.075 kcal (2) G-P(sol) polarization free energy of solvation -73.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.254 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.72 seconds